Wall clock time and date at job start Mon Mar 30 2020 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99726 * 2 1 4 4 H 1.48496 * 109.47316 * 270.00093 * 3 2 1 5 5 H 1.48506 * 109.47085 * 30.00303 * 3 2 1 6 6 H 1.48503 * 109.47125 * 149.99983 * 3 2 1 7 7 C 1.37867 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00235 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00463 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47430 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46974 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47000 * 300.00410 * 11 10 9 13 13 C 1.53006 * 109.46626 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.46646 * 174.99857 * 13 12 11 15 15 H 1.08998 * 109.47339 * 55.00028 * 14 13 12 16 16 F 1.39905 * 109.47274 * 294.99709 * 14 13 12 17 17 C 1.53003 * 109.46881 * 175.00103 * 14 13 12 18 18 F 1.39900 * 109.47402 * 59.99931 * 17 14 13 19 19 F 1.39903 * 109.47186 * 180.02562 * 17 14 13 20 20 F 1.39902 * 109.46896 * 299.99468 * 17 14 13 21 21 C 1.52997 * 109.47592 * 59.99968 * 12 11 10 22 22 C 1.52996 * 109.46975 * 300.00042 * 21 12 11 23 23 H 0.96998 * 120.00084 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46830 * 59.99782 * 9 7 2 25 25 H 1.09000 * 109.47140 * 60.00158 * 10 9 7 26 26 H 1.09001 * 109.46922 * 299.99858 * 10 9 7 27 27 H 1.08993 * 109.46765 * 179.97438 * 11 10 9 28 28 H 1.09000 * 109.46866 * 60.00225 * 11 10 9 29 29 H 1.09000 * 109.47160 * 299.99635 * 12 11 10 30 30 H 1.08995 * 109.46794 * 294.99833 * 13 12 11 31 31 H 1.09000 * 109.47314 * 54.99967 * 13 12 11 32 32 H 1.09000 * 109.47140 * 59.99654 * 21 12 11 33 33 H 1.09001 * 109.47375 * 179.97438 * 21 12 11 34 34 H 1.09004 * 109.47368 * 299.99783 * 22 21 12 35 35 H 1.08996 * 109.47261 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0022 12 6 6.0606 -1.9154 -1.2521 13 6 7.5907 -1.9160 -1.2536 14 6 8.0995 -1.3067 -2.5615 15 1 7.6651 -0.3159 -2.6941 16 9 7.7281 -2.1259 -3.6331 17 6 9.6244 -1.1925 -2.5116 18 9 10.1821 -2.4643 -2.3415 19 9 10.0897 -0.6349 -3.7074 20 9 9.9959 -0.3733 -1.4401 21 6 5.5506 -0.4730 -1.2522 22 6 4.0206 -0.4731 -1.2510 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.6580 -3.1505 -0.8907 26 1 3.6587 -3.1500 0.8893 27 1 5.9150 -3.6639 -0.0017 28 1 5.9157 -2.1222 0.8873 29 1 5.6966 -2.4296 -2.1416 30 1 7.9549 -1.3265 -0.4122 31 1 7.9538 -2.9398 -1.1642 32 1 5.9146 0.0412 -0.3627 33 1 5.9135 0.0407 -2.1425 34 1 3.6565 -0.9872 -2.1405 35 1 3.6572 0.5545 -1.2515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:39 Heat of formation + Delta-G solvation = -250.398774 kcal Electronic energy + Delta-G solvation = -21466.583366 eV Core-core repulsion = 17575.985873 eV Total energy + Delta-G solvation = -3890.597493 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.34104 -49.21961 -48.75666 -48.52153 -39.79990 -35.75270 -34.00155 -31.71258 -31.22965 -27.97175 -25.43986 -23.82641 -23.20612 -21.59105 -20.55397 -19.81704 -19.47391 -19.11602 -18.73048 -17.33111 -16.91965 -16.40385 -15.68545 -15.52122 -15.45677 -15.16808 -15.12937 -15.07967 -14.90516 -14.88043 -14.86825 -14.75776 -14.44096 -13.49913 -13.28393 -13.11232 -12.84969 -12.59369 -12.39947 -12.06332 -11.92076 -11.82271 -11.59667 -11.54169 -11.12199 -10.85577 -10.62193 -10.44759 -8.27717 -6.30998 1.31275 1.36951 1.39229 1.48151 2.34700 2.45114 2.71365 2.81363 3.08344 3.36953 3.58980 3.73321 3.93433 3.97741 4.10141 4.44653 4.55548 4.57431 4.72101 4.76878 4.80592 4.84222 4.92167 5.02803 5.16590 5.21307 5.42356 5.42820 5.51990 5.67034 5.75491 5.87990 6.36302 6.77787 7.34796 8.89686 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.033218 B = 0.004850 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.726430 B = 5771.419900 C = 6106.070008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.005 3.995 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.304 1.304 6 H -0.239 1.239 7 C -0.520 4.520 8 H 0.026 0.974 9 C 0.011 3.989 10 C -0.098 4.098 11 C -0.104 4.104 12 C -0.077 4.077 13 C -0.140 4.140 14 C 0.054 3.946 15 H 0.149 0.851 16 F -0.188 7.188 17 C 0.434 3.566 18 F -0.179 7.179 19 F -0.182 7.182 20 F -0.169 7.169 21 C -0.119 4.119 22 C -0.120 4.120 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.706 -1.190 -4.214 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.191 4.191 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.232 1.232 6 H -0.162 1.162 7 C -0.558 4.558 8 H 0.045 0.955 9 C -0.007 4.007 10 C -0.135 4.135 11 C -0.141 4.141 12 C -0.096 4.096 13 C -0.177 4.177 14 C 0.017 3.983 15 H 0.166 0.834 16 F -0.169 7.169 17 C 0.380 3.620 18 F -0.161 7.161 19 F -0.164 7.164 20 F -0.151 7.151 21 C -0.156 4.156 22 C -0.157 4.157 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 22.599 -1.127 -4.239 23.021 hybrid contribution -0.466 0.645 -0.180 0.815 sum 22.133 -0.482 -4.419 22.575 Atomic orbital electron populations 1.70076 1.08436 1.27898 1.53342 1.25973 0.95427 1.03320 0.94371 0.85773 0.79359 0.78271 0.78597 1.19366 1.23223 1.16216 1.21533 0.92300 0.92602 1.49354 0.95514 1.19146 0.92693 0.94755 0.94153 1.21362 0.95586 0.96433 1.00154 1.21537 0.94249 1.00786 0.97549 1.21021 0.92768 0.96247 0.99519 1.22327 0.96693 1.04202 0.94522 1.23078 0.87778 0.99242 0.88175 0.83359 1.92920 1.91600 1.74908 1.57465 1.21174 0.92850 0.74092 0.73928 1.93209 1.87664 1.40094 1.95108 1.93217 1.90734 1.85488 1.46949 1.93224 1.92911 1.72848 1.56072 1.21772 0.94576 0.96781 1.02509 1.21838 0.95757 0.98612 0.99538 0.92771 0.95733 0.93872 0.93693 0.90486 0.91143 0.90978 0.86915 0.88298 0.90936 0.90739 0.93291 0.95021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.67 13.96 21.44 0.30 -60.37 16 2 C 0.01 0.29 5.45 84.65 0.46 0.76 16 3 Si 0.95 44.60 24.37 68.60 1.67 46.27 16 4 H -0.27 -11.89 6.87 99.48 0.68 -11.21 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.24 -10.04 6.53 99.48 0.65 -9.39 16 7 C -0.52 -29.63 9.14 25.60 0.23 -29.39 16 8 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 9 C 0.01 0.50 1.69 -11.54 -0.02 0.48 16 10 C -0.10 -3.59 5.14 30.60 0.16 -3.43 16 11 C -0.10 -2.69 5.20 30.60 0.16 -2.53 16 12 C -0.08 -1.80 2.15 -10.79 -0.02 -1.82 16 13 C -0.14 -2.34 4.21 30.60 0.13 -2.21 16 14 C 0.05 0.92 3.16 30.59 0.10 1.02 16 15 H 0.15 2.01 6.34 -2.39 -0.02 2.00 16 16 F -0.19 -4.05 16.64 44.97 0.75 -3.30 16 17 C 0.43 7.59 2.91 71.98 0.21 7.80 16 18 F -0.18 -3.45 16.87 44.97 0.76 -2.69 16 19 F -0.18 -3.56 17.30 44.97 0.78 -2.78 16 20 F -0.17 -2.86 16.71 44.97 0.75 -2.11 16 21 C -0.12 -3.20 4.97 30.59 0.15 -3.04 16 22 C -0.12 -4.63 4.68 30.59 0.14 -4.49 16 23 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.82 7.81 -2.39 -0.02 1.80 16 30 H 0.11 1.55 7.66 -2.39 -0.02 1.53 16 31 H 0.10 1.51 7.94 -2.39 -0.02 1.49 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.63 6.46 -2.39 -0.02 1.61 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.03 1.31 3.27 -2.39 -0.01 1.30 16 Total: -1.00 -66.06 286.91 7.72 -58.34 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.02 Total: 3.49 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 1.70 Total: -36.86 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.30 Total: -60.37 kcal Atomic # 9 Polarization: -13.91 SS G_CDS: 3.04 Total: -10.87 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.27 kcal Total: -66.06 7.72 -58.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.061 kcal (2) G-P(sol) polarization free energy of solvation -66.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds