Wall clock time and date at job start Mon Mar 30 2020 06:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00318 * 2 1 4 4 H 1.48503 * 109.47178 * 239.99537 * 3 2 1 5 5 H 1.48496 * 109.47539 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47420 * 119.99763 * 3 2 1 7 7 C 1.37881 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47283 * 299.99258 * 9 7 2 11 11 C 1.52997 * 109.46991 * 300.00439 * 10 9 7 12 12 C 1.52996 * 109.47131 * 299.99311 * 11 10 9 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47225 * 65.00404 * 13 12 11 15 15 H 1.09005 * 109.47056 * 304.99530 * 14 13 12 16 16 F 1.39901 * 109.47468 * 64.99633 * 14 13 12 17 17 C 1.53006 * 109.47521 * 185.00040 * 14 13 12 18 18 F 1.39906 * 109.46906 * 59.99693 * 17 14 13 19 19 F 1.39897 * 109.47313 * 179.97438 * 17 14 13 20 20 F 1.39904 * 109.46999 * 299.99853 * 17 14 13 21 21 C 1.53002 * 109.46972 * 60.00459 * 12 11 10 22 22 C 1.52997 * 109.46817 * 299.99733 * 21 12 11 23 23 H 0.97002 * 119.99397 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47374 * 59.99558 * 9 7 2 25 25 H 1.09002 * 109.46719 * 60.00151 * 10 9 7 26 26 H 1.08993 * 109.47839 * 179.97438 * 10 9 7 27 27 H 1.09001 * 109.47289 * 179.97438 * 11 10 9 28 28 H 1.09000 * 109.47611 * 59.99933 * 11 10 9 29 29 H 1.08996 * 109.47452 * 300.00000 * 12 11 10 30 30 H 1.09000 * 109.47325 * 185.00280 * 13 12 11 31 31 H 1.09006 * 109.47500 * 305.00368 * 13 12 11 32 32 H 1.09002 * 109.47070 * 179.97438 * 21 12 11 33 33 H 1.08996 * 109.47407 * 59.99513 * 21 12 11 34 34 H 1.09001 * 109.47502 * 300.00518 * 22 21 12 35 35 H 1.09001 * 109.47289 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 0.3709 -2.5800 1.2495 11 6 1.2501 -2.4987 2.4990 12 6 2.2443 -3.6617 2.4995 13 6 3.1239 -3.5800 3.7486 14 6 2.2604 -3.7852 4.9949 15 1 1.4417 -3.0655 4.9921 16 9 1.7399 -5.0838 4.9930 17 6 3.1153 -3.5802 6.2472 18 9 3.6358 -2.2816 6.2491 19 9 2.3255 -3.7673 7.3867 20 9 4.1661 -4.5038 6.2508 21 6 3.1243 -3.5809 1.2505 22 6 2.2450 -3.6622 0.0011 23 1 -0.4849 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 -0.3374 -1.7514 1.2491 26 1 -0.1745 -3.5236 1.2494 27 1 0.6232 -2.5558 3.3888 28 1 1.7952 -1.5548 2.4990 29 1 1.6992 -4.6056 2.4996 30 1 3.8893 -4.3549 3.7054 31 1 3.6006 -2.6008 3.7941 32 1 3.8329 -4.4092 1.2512 33 1 3.6693 -2.6370 1.2505 34 1 1.6999 -4.6061 0.0011 35 1 2.8719 -3.6052 -0.8887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:43 Heat of formation + Delta-G solvation = -250.612536 kcal Electronic energy + Delta-G solvation = -21771.744666 eV Core-core repulsion = 17881.137903 eV Total energy + Delta-G solvation = -3890.606762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.34943 -49.22074 -48.76060 -48.52591 -39.70090 -35.58033 -33.69570 -31.20636 -30.88093 -27.52779 -26.05179 -23.82772 -22.94603 -21.61367 -20.47946 -19.81938 -19.46339 -19.11444 -17.77366 -17.22284 -16.65735 -16.32749 -15.92631 -15.53737 -15.51592 -15.21039 -15.16227 -14.96383 -14.87873 -14.87200 -14.62897 -14.59586 -13.73775 -13.29654 -13.02042 -12.81846 -12.73385 -12.56833 -12.41261 -12.24546 -12.05898 -11.79169 -11.64868 -11.30152 -10.83562 -10.62036 -10.39064 -10.20712 -7.99211 -6.09245 1.38954 1.44335 1.45804 1.51698 2.43719 2.48587 2.71953 2.80881 3.29010 3.39626 3.60644 3.79300 4.05560 4.14559 4.25884 4.63005 4.72609 4.76556 4.82749 4.95098 4.99964 5.04187 5.15423 5.22185 5.28503 5.51767 5.61283 5.71569 5.80046 5.82426 6.02992 6.29102 6.50684 7.01486 7.56746 9.05326 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.005781 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.244332 B = 4842.553807 C = 5328.456656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.504 4.504 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.105 4.105 11 C -0.095 4.095 12 C -0.071 4.071 13 C -0.140 4.140 14 C 0.058 3.942 15 H 0.143 0.857 16 F -0.185 7.185 17 C 0.436 3.564 18 F -0.171 7.171 19 F -0.181 7.181 20 F -0.177 7.177 21 C -0.096 4.096 22 C -0.104 4.104 23 H 0.256 0.744 24 H -0.018 1.018 25 H 0.056 0.944 26 H 0.023 0.977 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 -7.629 11.629 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.143 4.143 11 C -0.132 4.132 12 C -0.090 4.090 13 C -0.178 4.178 14 C 0.021 3.979 15 H 0.160 0.840 16 F -0.166 7.166 17 C 0.381 3.619 18 F -0.153 7.153 19 F -0.162 7.162 20 F -0.159 7.159 21 C -0.133 4.133 22 C -0.141 4.141 23 H 0.065 0.935 24 H 0.001 0.999 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.048 -7.536 11.661 15.144 hybrid contribution 0.098 1.102 -0.076 1.109 sum 6.145 -6.434 11.585 14.607 Atomic orbital electron populations 1.70014 1.07104 1.26622 1.52339 1.25608 0.95386 1.01742 0.95632 0.85913 0.78547 0.80217 0.78804 1.20220 1.21768 1.19300 1.21393 0.92798 0.91336 1.48657 0.92610 1.18706 0.93247 0.93255 0.93045 1.21367 0.98484 0.98412 0.96072 1.21424 0.97023 0.98163 0.96631 1.20982 0.95877 0.98877 0.93224 1.22308 0.98373 1.05742 0.91354 1.22982 0.98524 0.83692 0.92714 0.83989 1.92903 1.87896 1.38794 1.96996 1.21134 0.79962 0.74430 0.86397 1.93226 1.87569 1.37810 1.96679 1.93210 1.73913 1.94931 1.54139 1.93204 1.59520 1.66383 1.96775 1.21377 0.97150 1.01451 0.93307 1.21470 0.97801 0.97434 0.97445 0.93478 0.99942 0.92570 0.95796 0.93080 0.92870 0.90997 0.88264 0.88222 0.91322 0.92395 0.93463 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.01 11.32 21.45 0.24 -51.77 16 2 C 0.01 0.75 5.30 84.66 0.45 1.20 16 3 Si 0.94 42.31 29.54 68.60 2.03 44.33 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.50 -25.92 6.61 25.60 0.17 -25.75 16 8 H 0.06 2.80 6.71 -2.91 -0.02 2.78 16 9 C 0.04 1.72 2.59 -11.54 -0.03 1.69 16 10 C -0.11 -4.71 5.24 30.59 0.16 -4.55 16 11 C -0.10 -3.48 4.74 30.59 0.15 -3.34 16 12 C -0.07 -2.14 2.15 -10.79 -0.02 -2.16 16 13 C -0.14 -3.34 4.21 30.59 0.13 -3.21 16 14 C 0.06 1.31 3.16 30.60 0.10 1.41 16 15 H 0.14 2.96 6.35 -2.38 -0.02 2.94 16 16 F -0.19 -4.64 16.64 44.97 0.75 -3.89 16 17 C 0.44 9.69 2.91 71.98 0.21 9.90 16 18 F -0.17 -3.92 16.71 44.97 0.75 -3.17 16 19 F -0.18 -4.19 17.30 44.97 0.78 -3.41 16 20 F -0.18 -4.07 16.87 44.97 0.76 -3.31 16 21 C -0.10 -3.11 4.98 30.59 0.15 -2.95 16 22 C -0.10 -4.01 5.41 30.60 0.17 -3.84 16 23 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H 0.06 2.91 6.07 -2.39 -0.01 2.90 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.63 6.46 -2.39 -0.02 1.62 16 28 H 0.05 2.18 7.22 -2.39 -0.02 2.16 16 29 H 0.07 2.12 7.82 -2.39 -0.02 2.10 16 30 H 0.10 2.08 7.94 -2.39 -0.02 2.06 16 31 H 0.10 2.34 7.66 -2.38 -0.02 2.32 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -56.57 288.86 8.03 -48.54 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.10 Total: 4.29 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 1.62 Total: -31.61 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.24 Total: -51.77 kcal Atomic # 9 Polarization: -16.83 SS G_CDS: 3.04 Total: -13.79 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -56.57 8.03 -48.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.071 kcal (2) G-P(sol) polarization free energy of solvation -56.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds