Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99541 * 2 1 4 4 H 1.48507 * 109.46849 * 269.99764 * 3 2 1 5 5 H 1.48493 * 109.47162 * 29.99814 * 3 2 1 6 6 H 1.48499 * 109.46691 * 150.00003 * 3 2 1 7 7 C 1.37873 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00067 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47734 * 59.99900 * 9 7 2 11 11 C 1.53004 * 109.46978 * 299.99549 * 9 7 2 12 12 C 1.52999 * 109.47268 * 300.00394 * 11 9 7 13 13 C 1.53001 * 109.47093 * 299.99840 * 12 11 9 14 14 C 1.53003 * 109.47306 * 59.99929 * 13 12 11 15 15 C 1.53001 * 109.47017 * 179.97438 * 9 7 2 16 16 H 1.09005 * 109.47238 * 179.97438 * 15 9 7 17 17 C 1.53004 * 109.47332 * 300.00013 * 15 9 7 18 18 C 1.52999 * 109.46978 * 185.00233 * 17 15 9 19 19 H 1.08993 * 109.47839 * 54.99933 * 18 17 15 20 20 F 1.39903 * 109.47051 * 294.99139 * 18 17 15 21 21 C 1.53006 * 109.46626 * 174.99863 * 18 17 15 22 22 F 1.39897 * 109.47129 * 59.99913 * 21 18 17 23 23 F 1.39900 * 109.46764 * 179.97438 * 21 18 17 24 24 F 1.39895 * 109.46931 * 299.99634 * 21 18 17 25 25 H 0.97000 * 120.00381 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46742 * 179.97438 * 11 9 7 27 27 H 1.08994 * 109.46578 * 60.00369 * 11 9 7 28 28 H 1.09000 * 109.47058 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.47375 * 59.99600 * 12 11 9 30 30 H 1.09005 * 109.47238 * 299.99956 * 13 12 11 31 31 H 1.08993 * 109.47441 * 180.02562 * 13 12 11 32 32 H 1.08994 * 109.46952 * 179.97438 * 14 13 12 33 33 H 1.09003 * 109.46443 * 59.99868 * 14 13 12 34 34 H 1.08998 * 109.46703 * 64.99621 * 17 15 9 35 35 H 1.09002 * 109.46722 * 304.99770 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 6 0.3711 -2.5799 1.2495 12 6 1.2503 -2.4985 2.4991 13 6 2.2446 -3.6614 2.4997 14 6 3.1246 -3.5807 1.2507 15 6 2.2454 -3.6620 0.0005 16 1 1.7005 -4.6060 0.0010 17 6 3.1251 -3.5809 -1.2487 18 6 4.0339 -4.8101 -1.3131 19 1 3.4265 -5.7139 -1.2672 20 9 4.9226 -4.7900 -0.2329 21 6 4.8235 -4.7923 -2.6235 22 9 5.6032 -3.6322 -2.6825 23 9 5.6549 -5.9159 -2.6822 24 9 3.9348 -4.8123 -3.7038 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1742 -3.5237 1.2493 27 1 -0.3372 -1.7515 1.2490 28 1 0.6233 -2.5556 3.3888 29 1 1.7953 -1.5545 2.4990 30 1 1.6996 -4.6054 2.4997 31 1 2.8706 -3.6037 3.3900 32 1 3.8332 -4.4088 1.2514 33 1 3.6696 -2.6366 1.2507 34 1 3.7359 -2.6792 -1.2050 35 1 2.4933 -3.5493 -2.1364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261171144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = -233.306253 kcal Electronic energy + Delta-G solvation = -22121.145749 eV Core-core repulsion = 18231.289444 eV Total energy + Delta-G solvation = -3889.856305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.20606 -48.09509 -47.61300 -47.38677 -38.06134 -33.35773 -32.52577 -29.65621 -29.22119 -25.68634 -24.52665 -22.31017 -21.27789 -20.28620 -18.90827 -18.60128 -18.27154 -17.86564 -16.22695 -15.67083 -15.12193 -14.66157 -14.46144 -14.36151 -14.28202 -14.03072 -13.81416 -13.73870 -13.72610 -13.24169 -13.00111 -12.94017 -12.04108 -11.79541 -11.48173 -11.05505 -10.96560 -10.92140 -10.69779 -10.62462 -10.55086 -10.08397 -9.94751 -9.60222 -9.10594 -8.76292 -8.58113 -8.23380 -5.97261 -4.01446 2.55843 3.30368 3.38066 3.41115 3.59174 3.90978 3.96510 4.44472 4.66182 4.79949 5.06068 5.34423 5.58043 5.70286 5.83879 6.05191 6.16180 6.32407 6.52781 6.56248 6.65683 6.71432 6.74171 6.81627 6.91041 7.16571 7.22144 7.51368 7.55919 7.74502 7.91132 8.14759 8.46573 8.99879 9.61984 11.08451 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.020137 B = 0.007067 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.150997 B = 3961.098266 C = 4658.787427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.057 0.943 9 C 0.054 3.946 10 H 0.025 0.975 11 C -0.108 4.108 12 C -0.104 4.104 13 C -0.110 4.110 14 C -0.120 4.120 15 C -0.071 4.071 16 H 0.046 0.954 17 C -0.137 4.137 18 C 0.058 3.942 19 H 0.122 0.878 20 F -0.175 7.175 21 C 0.428 3.572 22 F -0.173 7.173 23 F -0.183 7.183 24 F -0.173 7.173 25 H 0.258 0.742 26 H 0.012 0.988 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -9.789 -1.934 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.035 3.965 10 H 0.043 0.957 11 C -0.146 4.146 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.157 4.157 15 C -0.089 4.089 16 H 0.064 0.936 17 C -0.174 4.174 18 C 0.020 3.980 19 H 0.139 0.861 20 F -0.155 7.155 21 C 0.373 3.627 22 F -0.154 7.154 23 F -0.165 7.165 24 F -0.155 7.155 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.042 -9.656 -1.935 11.554 hybrid contribution 0.667 0.956 -0.195 1.181 sum 6.709 -8.701 -2.129 11.191 Atomic orbital electron populations 1.69865 1.05812 1.26202 1.51051 1.24917 0.94726 0.98773 0.95442 0.86754 0.80028 0.84160 0.78063 1.20837 1.21413 1.19945 1.21128 0.92703 0.90258 1.49761 0.92474 1.18671 0.92059 0.91382 0.94341 0.95699 1.21504 0.98698 0.99282 0.95113 1.21385 0.97134 0.98512 0.97132 1.21457 0.97773 0.98467 0.97072 1.21845 0.97555 1.02203 0.94120 1.21148 0.96276 0.99816 0.91682 0.93553 1.22352 0.98174 0.94611 1.02273 1.23044 0.89086 1.06569 0.79303 0.86053 1.92841 1.70018 1.98135 1.54550 1.21325 0.79073 0.73956 0.88314 1.93221 1.76100 1.49277 1.96805 1.93193 1.73759 1.52650 1.96891 1.93200 1.68008 1.96178 1.58066 0.93163 0.96902 0.89160 0.95259 0.91230 0.93853 0.93940 0.92396 0.91191 0.88397 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.50 -12.49 5.94 -34.44 -0.20 -12.69 16 8 H 0.06 1.43 5.69 -52.48 -0.30 1.13 16 9 C 0.05 1.22 2.12 -91.77 -0.19 1.03 16 10 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 11 C -0.11 -2.43 5.24 -26.73 -0.14 -2.57 16 12 C -0.10 -2.14 5.70 -26.73 -0.15 -2.29 16 13 C -0.11 -1.97 5.92 -26.73 -0.16 -2.13 16 14 C -0.12 -2.18 4.43 -26.70 -0.12 -2.30 16 15 C -0.07 -1.31 1.95 -90.59 -0.18 -1.48 16 16 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.14 -2.27 3.97 -26.73 -0.11 -2.37 16 18 C 0.06 0.79 3.26 -26.73 -0.09 0.70 16 19 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 20 F -0.17 -2.65 13.86 2.25 0.03 -2.62 16 21 C 0.43 5.89 2.91 37.16 0.11 5.99 16 22 F -0.17 -2.64 16.87 2.25 0.04 -2.61 16 23 F -0.18 -2.46 17.30 2.25 0.04 -2.42 16 24 F -0.17 -2.37 16.71 2.25 0.04 -2.33 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.58 7.22 -51.93 -0.37 1.20 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.96 5.44 -51.93 -0.28 0.68 16 33 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 34 H 0.10 1.81 6.59 -51.93 -0.34 1.47 16 35 H 0.09 1.44 7.66 -51.93 -0.40 1.04 16 LS Contribution 284.24 15.07 4.28 4.28 Total: -1.00 -26.14 284.24 -5.74 -31.88 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.45 Total: -1.56 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.32 Total: -16.56 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.63 Total: -23.77 kcal Atomic # 9 Polarization: -10.13 SS G_CDS: 0.15 Total: -9.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.14 -5.74 -31.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.424 kcal (2) G-P(sol) polarization free energy of solvation -26.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds