Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99541 * 2 1 4 4 H 1.48507 * 109.46849 * 269.99764 * 3 2 1 5 5 H 1.48493 * 109.47162 * 29.99814 * 3 2 1 6 6 H 1.48499 * 109.46691 * 150.00003 * 3 2 1 7 7 C 1.37873 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00067 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47734 * 59.99900 * 9 7 2 11 11 C 1.53004 * 109.46978 * 299.99549 * 9 7 2 12 12 C 1.52999 * 109.47268 * 300.00394 * 11 9 7 13 13 C 1.53001 * 109.47093 * 299.99840 * 12 11 9 14 14 C 1.53003 * 109.47306 * 59.99929 * 13 12 11 15 15 C 1.53001 * 109.47017 * 179.97438 * 9 7 2 16 16 H 1.09005 * 109.47238 * 179.97438 * 15 9 7 17 17 C 1.53004 * 109.47332 * 300.00013 * 15 9 7 18 18 C 1.52999 * 109.46978 * 185.00233 * 17 15 9 19 19 H 1.08993 * 109.47839 * 54.99933 * 18 17 15 20 20 F 1.39903 * 109.47051 * 294.99139 * 18 17 15 21 21 C 1.53006 * 109.46626 * 174.99863 * 18 17 15 22 22 F 1.39897 * 109.47129 * 59.99913 * 21 18 17 23 23 F 1.39900 * 109.46764 * 179.97438 * 21 18 17 24 24 F 1.39895 * 109.46931 * 299.99634 * 21 18 17 25 25 H 0.97000 * 120.00381 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46742 * 179.97438 * 11 9 7 27 27 H 1.08994 * 109.46578 * 60.00369 * 11 9 7 28 28 H 1.09000 * 109.47058 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.47375 * 59.99600 * 12 11 9 30 30 H 1.09005 * 109.47238 * 299.99956 * 13 12 11 31 31 H 1.08993 * 109.47441 * 180.02562 * 13 12 11 32 32 H 1.08994 * 109.46952 * 179.97438 * 14 13 12 33 33 H 1.09003 * 109.46443 * 59.99868 * 14 13 12 34 34 H 1.08998 * 109.46703 * 64.99621 * 17 15 9 35 35 H 1.09002 * 109.46722 * 304.99770 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 6 0.3711 -2.5799 1.2495 12 6 1.2503 -2.4985 2.4991 13 6 2.2446 -3.6614 2.4997 14 6 3.1246 -3.5807 1.2507 15 6 2.2454 -3.6620 0.0005 16 1 1.7005 -4.6060 0.0010 17 6 3.1251 -3.5809 -1.2487 18 6 4.0339 -4.8101 -1.3131 19 1 3.4265 -5.7139 -1.2672 20 9 4.9226 -4.7900 -0.2329 21 6 4.8235 -4.7923 -2.6235 22 9 5.6032 -3.6322 -2.6825 23 9 5.6549 -5.9159 -2.6822 24 9 3.9348 -4.8123 -3.7038 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1742 -3.5237 1.2493 27 1 -0.3372 -1.7515 1.2490 28 1 0.6233 -2.5556 3.3888 29 1 1.7953 -1.5545 2.4990 30 1 1.6996 -4.6054 2.4997 31 1 2.8706 -3.6037 3.3900 32 1 3.8332 -4.4088 1.2514 33 1 3.6696 -2.6366 1.2507 34 1 3.7359 -2.6792 -1.2050 35 1 2.4933 -3.5493 -2.1364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261171144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = -244.981248 kcal Electronic energy + Delta-G solvation = -22121.652015 eV Core-core repulsion = 18231.289444 eV Total energy + Delta-G solvation = -3890.362571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.31076 -49.22749 -48.71873 -48.51158 -39.66940 -34.82252 -34.34991 -31.14527 -30.83707 -27.28717 -26.19683 -23.57165 -22.85390 -21.74959 -20.52841 -19.76915 -19.42652 -19.04432 -17.64369 -17.32026 -16.63261 -16.19976 -15.89982 -15.48482 -15.46508 -15.22470 -15.11831 -14.86479 -14.84902 -14.78202 -14.69760 -14.43115 -13.59815 -13.41858 -13.04632 -12.84494 -12.50272 -12.43622 -12.27558 -12.18039 -12.13051 -11.78073 -11.58611 -11.31843 -10.81265 -10.48847 -10.34828 -10.10628 -7.99047 -6.06462 1.39855 1.43738 1.45618 1.50356 2.47834 2.49795 2.79307 2.86659 3.29779 3.51536 3.69970 3.88176 4.17018 4.26630 4.32938 4.62996 4.71735 4.84465 4.94678 5.03167 5.09876 5.17079 5.20898 5.32031 5.34073 5.56239 5.66931 5.73608 5.84392 5.85643 6.05906 6.28267 6.52428 7.03284 7.58676 9.05406 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.020137 B = 0.007067 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.150997 B = 3961.098266 C = 4658.787427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.930 3.070 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.493 4.493 8 H 0.054 0.946 9 C 0.050 3.950 10 H -0.005 1.005 11 C -0.107 4.107 12 C -0.101 4.101 13 C -0.106 4.106 14 C -0.116 4.116 15 C -0.067 4.067 16 H 0.070 0.930 17 C -0.134 4.134 18 C 0.066 3.934 19 H 0.160 0.840 20 F -0.181 7.181 21 C 0.432 3.568 22 F -0.185 7.185 23 F -0.178 7.178 24 F -0.172 7.172 25 H 0.255 0.745 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 -11.636 -1.571 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.758 3.242 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.031 3.969 10 H 0.013 0.987 11 C -0.145 4.145 12 C -0.138 4.138 13 C -0.143 4.143 14 C -0.153 4.153 15 C -0.085 4.085 16 H 0.089 0.911 17 C -0.172 4.172 18 C 0.028 3.972 19 H 0.178 0.822 20 F -0.161 7.161 21 C 0.378 3.622 22 F -0.166 7.166 23 F -0.160 7.160 24 F -0.154 7.154 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.059 -11.505 -1.573 13.589 hybrid contribution 0.341 1.519 -0.327 1.590 sum 7.400 -9.986 -1.901 12.574 Atomic orbital electron populations 1.70000 1.06845 1.26339 1.52736 1.25530 0.95327 1.01425 0.96036 0.85982 0.79055 0.81346 0.77842 1.20763 1.21707 1.19564 1.21397 0.92647 0.91326 1.47782 0.92784 1.18643 0.92615 0.92400 0.93197 0.98677 1.21404 0.98458 0.98576 0.96060 1.21305 0.97420 0.98496 0.96593 1.21440 0.97331 0.97887 0.97688 1.21818 0.97691 1.01787 0.94003 1.21051 0.95806 0.98803 0.92868 0.91132 1.22183 0.98159 0.95308 1.01513 1.23030 0.88699 1.06494 0.78939 0.82229 1.92823 1.70276 1.98138 1.54883 1.21270 0.78953 0.73676 0.88334 1.93203 1.76483 1.50083 1.96861 1.93206 1.73619 1.52265 1.96869 1.93207 1.67930 1.96150 1.58064 0.93619 0.95258 0.92814 0.93986 0.94223 0.91766 0.92149 0.89954 0.93799 0.90815 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 11.32 21.45 0.24 -51.57 16 2 C 0.01 0.77 5.30 84.65 0.45 1.22 16 3 Si 0.93 43.25 29.54 68.60 2.03 45.27 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.49 -24.95 5.94 25.60 0.15 -24.79 16 8 H 0.05 2.73 5.69 -2.91 -0.02 2.71 16 9 C 0.05 2.26 2.12 -11.54 -0.02 2.24 16 10 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 11 C -0.11 -4.79 5.24 30.60 0.16 -4.63 16 12 C -0.10 -4.02 5.70 30.59 0.17 -3.85 16 13 C -0.11 -3.47 5.92 30.60 0.18 -3.29 16 14 C -0.12 -3.91 4.43 30.61 0.14 -3.78 16 15 C -0.07 -2.34 1.95 -10.77 -0.02 -2.36 16 16 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 17 C -0.13 -4.23 3.97 30.60 0.12 -4.11 16 18 C 0.07 1.60 3.26 30.60 0.10 1.70 16 19 H 0.16 2.77 8.14 -2.39 -0.02 2.75 16 20 F -0.18 -4.91 13.86 44.97 0.62 -4.28 16 21 C 0.43 10.88 2.91 71.98 0.21 11.09 16 22 F -0.18 -5.41 16.87 44.97 0.76 -4.66 16 23 F -0.18 -4.30 17.30 44.97 0.78 -3.52 16 24 F -0.17 -4.34 16.71 44.97 0.75 -3.59 16 25 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 2.81 6.07 -2.39 -0.01 2.79 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.80 7.22 -2.39 -0.02 1.78 16 30 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 2.42 5.44 -2.39 -0.01 2.40 16 33 H 0.04 1.71 6.62 -2.39 -0.02 1.69 16 34 H 0.07 2.69 6.59 -2.39 -0.02 2.67 16 35 H 0.09 2.81 7.66 -2.39 -0.02 2.79 16 Total: -1.00 -56.60 284.24 7.92 -48.68 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.10 Total: 4.22 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 1.64 Total: -30.55 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.24 Total: -51.57 kcal Atomic # 9 Polarization: -18.96 SS G_CDS: 2.91 Total: -16.04 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -56.60 7.92 -48.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.303 kcal (2) G-P(sol) polarization free energy of solvation -56.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds