Wall clock time and date at job start Mon Mar 30 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00231 * 2 1 4 4 H 1.48498 * 109.47211 * 270.00151 * 3 2 1 5 5 H 1.48504 * 109.47216 * 30.00211 * 3 2 1 6 6 H 1.48508 * 109.47282 * 149.99704 * 3 2 1 7 7 C 1.37878 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47624 * 59.99415 * 9 7 2 11 11 C 1.52997 * 109.46989 * 299.99712 * 9 7 2 12 12 C 1.53005 * 109.47452 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47159 * 59.99536 * 12 11 9 14 14 C 1.52997 * 109.47317 * 300.00546 * 13 12 11 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 18 18 C 1.53008 * 109.46847 * 294.99397 * 17 15 14 19 19 H 1.08998 * 109.46696 * 55.00348 * 18 17 15 20 20 F 1.39899 * 109.47111 * 295.00363 * 18 17 15 21 21 C 1.53002 * 109.47012 * 175.00127 * 18 17 15 22 22 F 1.39891 * 109.47120 * 60.00262 * 21 18 17 23 23 F 1.39897 * 109.47089 * 180.02562 * 21 18 17 24 24 F 1.39898 * 109.47172 * 300.00449 * 21 18 17 25 25 H 0.96997 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99998 * 11 9 7 27 27 H 1.09001 * 109.47289 * 60.00082 * 11 9 7 28 28 H 1.09000 * 109.47360 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.46935 * 300.00125 * 12 11 9 30 30 H 1.08996 * 109.46929 * 179.97438 * 13 12 11 31 31 H 1.09002 * 109.46716 * 60.00455 * 13 12 11 32 32 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 33 33 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 34 34 H 1.08994 * 109.47704 * 54.99481 * 17 15 14 35 35 H 1.09003 * 109.47255 * 175.00269 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6246 -2.5571 -0.8896 11 6 0.3710 -2.5799 1.2495 12 6 -0.3935 -3.9053 1.2499 13 6 0.6011 -5.0678 1.2507 14 6 1.4812 -4.9870 0.0018 15 6 2.2457 -3.6617 0.0015 16 1 2.8720 -3.6033 0.8916 17 6 3.1252 -3.5807 -1.2478 18 6 4.2000 -4.6679 -1.1862 19 1 3.7260 -5.6401 -1.0507 20 9 5.0591 -4.4141 -0.1116 21 6 5.0006 -4.6682 -2.4901 22 9 5.6089 -3.4205 -2.6640 23 9 5.9829 -5.6627 -2.4340 24 9 4.1415 -4.9219 -3.5647 25 1 -0.4850 0.8400 0.0004 26 1 0.9974 -2.5220 2.1397 27 1 -0.3373 -1.7515 1.2491 28 1 -1.0208 -3.9626 2.1395 29 1 -1.0198 -3.9637 0.3597 30 1 0.0565 -6.0119 1.2515 31 1 1.2275 -5.0094 2.1409 32 1 0.8548 -5.0454 -0.8884 33 1 2.1900 -5.8150 0.0027 34 1 2.5101 -3.7278 -2.1355 35 1 3.6015 -2.6013 -1.2940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261171147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:32 Heat of formation + Delta-G solvation = -240.782869 kcal Electronic energy + Delta-G solvation = -21910.011162 eV Core-core repulsion = 18019.830646 eV Total energy + Delta-G solvation = -3890.180516 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.19219 -48.00968 -47.60052 -47.33270 -38.10851 -33.38276 -32.90611 -29.74609 -29.30352 -25.72246 -24.51873 -22.59874 -21.02975 -20.20430 -18.89841 -18.65688 -18.25970 -17.84154 -16.39835 -16.08752 -15.06302 -14.66453 -14.39128 -14.35316 -14.10662 -14.01355 -13.87345 -13.73554 -13.71386 -13.47064 -13.20101 -12.89488 -12.26182 -11.79208 -11.66848 -11.51306 -10.96145 -10.87312 -10.70139 -10.56652 -10.44322 -10.14745 -10.11139 -9.78767 -9.46081 -8.86580 -8.62396 -8.29640 -5.99050 -4.05278 2.57215 3.30589 3.37885 3.41688 3.60356 3.91818 3.97582 4.43641 4.66794 4.79981 5.06702 5.30574 5.42334 5.51954 5.55911 5.91726 6.03759 6.20713 6.24696 6.27996 6.40488 6.55607 6.62635 6.71167 6.80539 6.94917 7.05572 7.25643 7.47017 7.74798 7.98146 8.13043 8.44003 8.98071 9.59790 11.06131 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.007517 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.205600 B = 3723.945921 C = 4886.579613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.060 3.940 10 H 0.027 0.973 11 C -0.111 4.111 12 C -0.120 4.120 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.075 4.075 16 H 0.066 0.934 17 C -0.139 4.139 18 C 0.055 3.945 19 H 0.123 0.877 20 F -0.180 7.180 21 C 0.428 3.572 22 F -0.172 7.172 23 F -0.183 7.183 24 F -0.174 7.174 25 H 0.259 0.741 26 H 0.033 0.967 27 H 0.092 0.908 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -10.686 -2.410 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.041 3.959 10 H 0.045 0.955 11 C -0.149 4.149 12 C -0.158 4.158 13 C -0.150 4.150 14 C -0.156 4.156 15 C -0.093 4.093 16 H 0.085 0.915 17 C -0.176 4.176 18 C 0.017 3.983 19 H 0.141 0.859 20 F -0.160 7.160 21 C 0.373 3.627 22 F -0.153 7.153 23 F -0.165 7.165 24 F -0.155 7.155 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.930 -10.549 -2.411 11.891 hybrid contribution 0.717 0.904 -0.192 1.169 sum 5.646 -9.645 -2.603 11.475 Atomic orbital electron populations 1.69869 1.05841 1.26327 1.50759 1.24938 0.94786 0.98946 0.95150 0.86696 0.80018 0.83827 0.78108 1.20743 1.21328 1.19893 1.21229 0.92878 0.90599 1.50455 0.92515 1.18618 0.91975 0.90648 0.94643 0.95487 1.21617 0.99507 0.95249 0.98493 1.21636 0.97476 0.96720 0.99937 1.21470 0.97872 0.97869 0.97801 1.21716 0.98193 0.97158 0.98487 1.21212 0.96893 0.96008 0.95199 0.91535 1.22379 0.95465 0.97658 1.02116 1.23062 0.89423 1.06130 0.79676 0.85924 1.92911 1.71558 1.96010 1.55525 1.21319 0.79086 0.74067 0.88205 1.93223 1.84178 1.41869 1.96073 1.93191 1.64539 1.62080 1.96663 1.93195 1.69854 1.93964 1.58483 0.93079 0.94806 0.89005 0.94037 0.93018 0.93605 0.92697 0.92256 0.93874 0.89519 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.27 7.77 -34.44 -0.27 -13.54 16 8 H 0.06 1.46 6.72 -52.48 -0.35 1.11 16 9 C 0.06 1.36 1.64 -91.78 -0.15 1.21 16 10 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.11 -2.48 4.98 -26.73 -0.13 -2.61 16 12 C -0.12 -2.21 5.92 -26.73 -0.16 -2.36 16 13 C -0.11 -1.79 5.92 -26.73 -0.16 -1.95 16 14 C -0.12 -1.86 4.96 -26.73 -0.13 -1.99 16 15 C -0.07 -1.39 1.64 -90.62 -0.15 -1.54 16 16 H 0.07 1.31 7.82 -51.93 -0.41 0.90 16 17 C -0.14 -2.35 4.04 -26.73 -0.11 -2.46 16 18 C 0.05 0.78 3.16 -26.73 -0.08 0.70 16 19 H 0.12 1.44 6.34 -51.93 -0.33 1.11 16 20 F -0.18 -2.90 16.64 2.25 0.04 -2.86 16 21 C 0.43 6.05 2.91 37.16 0.11 6.15 16 22 F -0.17 -2.71 16.87 2.25 0.04 -2.67 16 23 F -0.18 -2.52 17.30 2.25 0.04 -2.48 16 24 F -0.17 -2.39 16.71 2.25 0.04 -2.35 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.04 0.57 6.46 -51.93 -0.34 0.24 16 34 H 0.09 1.40 7.66 -51.93 -0.40 1.00 16 35 H 0.10 1.96 6.27 -51.93 -0.33 1.64 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -26.60 290.59 -5.75 -32.35 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.56 Total: -1.53 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -1.33 Total: -16.80 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.63 Total: -23.96 kcal Atomic # 9 Polarization: -10.51 SS G_CDS: 0.15 Total: -10.36 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.60 -5.75 -32.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.434 kcal (2) G-P(sol) polarization free energy of solvation -26.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds