Wall clock time and date at job start Mon Mar 30 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00231 * 2 1 4 4 H 1.48498 * 109.47211 * 270.00151 * 3 2 1 5 5 H 1.48504 * 109.47216 * 30.00211 * 3 2 1 6 6 H 1.48508 * 109.47282 * 149.99704 * 3 2 1 7 7 C 1.37878 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47624 * 59.99415 * 9 7 2 11 11 C 1.52997 * 109.46989 * 299.99712 * 9 7 2 12 12 C 1.53005 * 109.47452 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47159 * 59.99536 * 12 11 9 14 14 C 1.52997 * 109.47317 * 300.00546 * 13 12 11 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 18 18 C 1.53008 * 109.46847 * 294.99397 * 17 15 14 19 19 H 1.08998 * 109.46696 * 55.00348 * 18 17 15 20 20 F 1.39899 * 109.47111 * 295.00363 * 18 17 15 21 21 C 1.53002 * 109.47012 * 175.00127 * 18 17 15 22 22 F 1.39891 * 109.47120 * 60.00262 * 21 18 17 23 23 F 1.39897 * 109.47089 * 180.02562 * 21 18 17 24 24 F 1.39898 * 109.47172 * 300.00449 * 21 18 17 25 25 H 0.96997 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99998 * 11 9 7 27 27 H 1.09001 * 109.47289 * 60.00082 * 11 9 7 28 28 H 1.09000 * 109.47360 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.46935 * 300.00125 * 12 11 9 30 30 H 1.08996 * 109.46929 * 179.97438 * 13 12 11 31 31 H 1.09002 * 109.46716 * 60.00455 * 13 12 11 32 32 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 33 33 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 34 34 H 1.08994 * 109.47704 * 54.99481 * 17 15 14 35 35 H 1.09003 * 109.47255 * 175.00269 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6246 -2.5571 -0.8896 11 6 0.3710 -2.5799 1.2495 12 6 -0.3935 -3.9053 1.2499 13 6 0.6011 -5.0678 1.2507 14 6 1.4812 -4.9870 0.0018 15 6 2.2457 -3.6617 0.0015 16 1 2.8720 -3.6033 0.8916 17 6 3.1252 -3.5807 -1.2478 18 6 4.2000 -4.6679 -1.1862 19 1 3.7260 -5.6401 -1.0507 20 9 5.0591 -4.4141 -0.1116 21 6 5.0006 -4.6682 -2.4901 22 9 5.6089 -3.4205 -2.6640 23 9 5.9829 -5.6627 -2.4340 24 9 4.1415 -4.9219 -3.5647 25 1 -0.4850 0.8400 0.0004 26 1 0.9974 -2.5220 2.1397 27 1 -0.3373 -1.7515 1.2491 28 1 -1.0208 -3.9626 2.1395 29 1 -1.0198 -3.9637 0.3597 30 1 0.0565 -6.0119 1.2515 31 1 1.2275 -5.0094 2.1409 32 1 0.8548 -5.0454 -0.8884 33 1 2.1900 -5.8150 0.0027 34 1 2.5101 -3.7278 -2.1355 35 1 3.6015 -2.6013 -1.2940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261171147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:32 Heat of formation + Delta-G solvation = -252.909483 kcal Electronic energy + Delta-G solvation = -21910.537011 eV Core-core repulsion = 18019.830646 eV Total energy + Delta-G solvation = -3890.706365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.32904 -49.18519 -48.74331 -48.50060 -39.63859 -34.91690 -34.65524 -31.37090 -30.73832 -27.26165 -26.20802 -23.87607 -22.59065 -21.64435 -20.40704 -19.79829 -19.43315 -19.06896 -18.35617 -17.28708 -16.65234 -16.23051 -15.62415 -15.51605 -15.46366 -15.20797 -15.14009 -14.90386 -14.86742 -14.85778 -14.61688 -14.54286 -14.03269 -13.39831 -13.04974 -12.91084 -12.81601 -12.55234 -12.17719 -12.10886 -11.95733 -11.75899 -11.61522 -11.49253 -11.15248 -10.54575 -10.39991 -10.24473 -8.03724 -6.15254 1.39309 1.42061 1.43028 1.50229 2.44933 2.47105 2.76321 2.84157 3.22986 3.48519 3.63823 3.85407 4.08025 4.18064 4.24988 4.53520 4.63603 4.76950 4.88157 4.91594 4.99906 5.07890 5.16031 5.24728 5.37023 5.50179 5.54456 5.57721 5.69092 5.77583 6.10785 6.24734 6.47151 6.97239 7.51980 8.99479 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.007517 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.205600 B = 3723.945921 C = 4886.579613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.058 3.942 10 H 0.000 1.000 11 C -0.108 4.108 12 C -0.115 4.115 13 C -0.109 4.109 14 C -0.116 4.116 15 C -0.069 4.069 16 H 0.055 0.945 17 C -0.136 4.136 18 C 0.062 3.938 19 H 0.161 0.839 20 F -0.189 7.189 21 C 0.433 3.567 22 F -0.185 7.185 23 F -0.178 7.178 24 F -0.169 7.169 25 H 0.257 0.743 26 H 0.022 0.978 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.663 -12.728 -2.466 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.039 3.961 10 H 0.018 0.982 11 C -0.146 4.146 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.153 4.153 15 C -0.087 4.087 16 H 0.073 0.927 17 C -0.174 4.174 18 C 0.025 3.975 19 H 0.178 0.822 20 F -0.170 7.170 21 C 0.378 3.622 22 F -0.166 7.166 23 F -0.159 7.159 24 F -0.151 7.151 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.565 -12.595 -2.469 13.989 hybrid contribution 0.518 1.564 -0.183 1.658 sum 6.083 -11.031 -2.652 12.873 Atomic orbital electron populations 1.70003 1.06888 1.26674 1.51951 1.25610 0.95501 1.01808 0.95442 0.85863 0.78929 0.80666 0.78058 1.20426 1.21221 1.19642 1.21612 0.92879 0.92225 1.49322 0.93071 1.18562 0.92504 0.91479 0.93541 0.98234 1.21461 0.98824 0.96617 0.97697 1.21552 0.97858 0.95529 1.00334 1.21462 0.97407 0.97843 0.97945 1.21718 0.98687 0.96150 0.98718 1.21041 0.96130 0.96116 0.95461 0.92682 1.22217 0.96060 0.97428 1.01686 1.23093 0.88503 1.06580 0.79374 0.82186 1.92895 1.71889 1.96145 1.56074 1.21225 0.79092 0.73701 0.88173 1.93203 1.84450 1.42853 1.96143 1.93204 1.64331 1.61714 1.96640 1.93207 1.69690 1.93881 1.58307 0.93340 0.95875 0.92745 0.92819 0.93474 0.90349 0.92482 0.91777 0.90208 0.88745 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.21 11.32 21.45 0.24 -51.97 16 2 C 0.01 0.80 5.30 84.66 0.45 1.25 16 3 Si 0.94 43.77 29.54 68.60 2.03 45.79 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.52 -27.65 7.77 25.60 0.20 -27.46 16 8 H 0.05 2.70 6.72 -2.91 -0.02 2.68 16 9 C 0.06 2.68 1.64 -11.54 -0.02 2.66 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.11 -4.92 4.98 30.60 0.15 -4.76 16 12 C -0.12 -4.09 5.92 30.60 0.18 -3.90 16 13 C -0.11 -3.10 5.92 30.59 0.18 -2.92 16 14 C -0.12 -3.23 4.96 30.59 0.15 -3.08 16 15 C -0.07 -2.49 1.64 -10.79 -0.02 -2.51 16 16 H 0.05 2.11 7.82 -2.39 -0.02 2.09 16 17 C -0.14 -4.46 4.04 30.60 0.12 -4.34 16 18 C 0.06 1.60 3.16 30.60 0.10 1.69 16 19 H 0.16 2.99 6.34 -2.39 -0.02 2.98 16 20 F -0.19 -5.72 16.64 44.97 0.75 -4.97 16 21 C 0.43 11.28 2.91 71.98 0.21 11.49 16 22 F -0.18 -5.64 16.87 44.97 0.76 -4.88 16 23 F -0.18 -4.41 17.30 44.97 0.78 -3.63 16 24 F -0.17 -4.26 16.71 44.97 0.75 -3.51 16 25 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 2.88 6.07 -2.39 -0.01 2.86 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.70 6.46 -2.39 -0.02 1.68 16 34 H 0.09 2.92 7.66 -2.39 -0.02 2.90 16 35 H 0.07 2.82 6.27 -2.39 -0.01 2.80 16 Total: -1.00 -58.60 290.59 8.11 -50.49 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.10 Total: 4.55 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 1.71 Total: -31.87 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.24 Total: -51.97 kcal Atomic # 9 Polarization: -20.02 SS G_CDS: 3.04 Total: -16.99 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -58.60 8.11 -50.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.424 kcal (2) G-P(sol) polarization free energy of solvation -58.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds