Wall clock time and date at job start Mon Mar 30 2020 07:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48495 * 109.47055 * 239.99988 * 3 2 1 5 5 H 1.48502 * 109.46654 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46899 * 119.99884 * 3 2 1 7 7 C 1.39721 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.41227 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.39092 * 126.43506 * 179.97438 * 9 7 2 11 11 N 1.36102 * 106.36858 * 179.77300 * 10 9 7 12 12 C 1.46504 * 126.10925 * 180.24603 * 11 10 9 13 13 C 1.50698 * 109.47082 * 264.97863 * 12 11 10 14 14 C 1.38237 * 119.99978 * 269.72799 * 13 12 11 15 15 C 1.38233 * 119.99890 * 179.76777 * 14 13 12 16 16 C 1.38237 * 119.99776 * 0.50406 * 15 14 13 17 17 C 1.38233 * 120.00103 * 359.74727 * 16 15 14 18 18 C 1.38232 * 120.00220 * 0.02562 * 17 16 15 19 19 C 1.35961 * 107.77954 * 0.23089 * 11 10 9 20 20 C 1.50704 * 125.20005 * 180.02562 * 19 11 10 21 21 C 1.53005 * 117.49811 * 188.61702 * 20 19 11 22 22 C 1.52994 * 59.99889 * 252.51206 * 21 20 19 23 23 N 1.30156 * 109.59885 * 359.97438 * 19 11 10 24 24 H 0.96998 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.08002 * 126.81948 * 0.04306 * 10 9 7 26 26 H 1.08995 * 109.47099 * 24.97812 * 12 11 10 27 27 H 1.08994 * 109.46916 * 144.97851 * 12 11 10 28 28 H 1.07998 * 120.00260 * 359.97438 * 14 13 12 29 29 H 1.07998 * 120.00401 * 180.22672 * 15 14 13 30 30 H 1.08004 * 120.00081 * 179.72296 * 16 15 14 31 31 H 1.08007 * 119.99961 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.00060 * 179.97438 * 18 17 16 33 33 H 1.08995 * 115.55210 * 334.32543 * 20 19 11 34 34 H 1.08999 * 117.49641 * 0.02562 * 21 20 19 35 35 H 1.08999 * 117.49807 * 145.01676 * 21 20 19 36 36 H 1.09007 * 117.49725 * 252.50849 * 22 21 20 37 37 H 1.08992 * 117.52196 * 107.48521 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.0980 1.6963 -1.2125 5 1 1.2792 2.7464 -0.0006 6 1 3.0979 1.6963 1.2125 7 6 2.0087 -1.2100 -0.0005 8 1 3.0887 -1.2101 -0.0010 9 6 1.3025 -2.4330 -0.0016 10 6 1.8585 -3.7080 -0.0028 11 7 0.8148 -4.5816 0.0016 12 6 0.9124 -6.0433 0.0074 13 6 0.8206 -6.5585 -1.4059 14 6 -0.4109 -6.8791 -1.9460 15 6 -0.4956 -7.3470 -3.2440 16 6 0.6521 -7.5043 -3.9982 17 6 1.8840 -7.1886 -3.4564 18 6 1.9683 -6.7161 -2.1600 19 6 -0.3345 -3.8552 0.0001 20 6 -1.7268 -4.4322 0.0043 21 6 -2.8934 -3.4638 -0.2016 22 6 -2.6376 -4.0709 1.1793 23 7 -0.0486 -2.5855 -0.0045 24 1 -0.4850 0.8400 0.0004 25 1 2.9097 -3.9557 -0.0023 26 1 1.8664 -6.3421 0.4416 27 1 0.0974 -6.4595 0.5995 28 1 -1.3071 -6.7608 -1.3551 29 1 -1.4579 -7.5941 -3.6672 30 1 0.5864 -7.8741 -5.0109 31 1 2.7808 -7.3118 -4.0456 32 1 2.9308 -6.4699 -1.7365 33 1 -1.8224 -5.4327 -0.4175 34 1 -2.6538 -2.4096 -0.3405 35 1 -3.7566 -3.8272 -0.7592 36 1 -3.3328 -4.8336 1.5303 37 1 -2.2298 -3.4163 1.9495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261188482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:38 Heat of formation + Delta-G solvation = 109.683682 kcal Electronic energy + Delta-G solvation = -19735.946410 eV Core-core repulsion = 16865.881981 eV Total energy + Delta-G solvation = -2870.064430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26840 -38.85077 -36.17893 -34.01381 -32.63372 -30.81410 -30.10979 -28.32513 -26.05427 -24.81639 -22.55875 -21.99303 -21.75796 -21.24278 -19.50695 -18.17048 -17.21374 -16.50765 -15.34976 -15.26656 -15.00746 -14.65535 -14.51516 -13.73863 -13.52810 -13.28771 -12.73969 -12.57029 -12.45513 -12.14370 -11.80362 -11.36752 -11.11542 -10.98414 -10.89059 -10.85234 -10.74773 -10.18125 -9.97652 -9.86632 -9.80754 -9.06057 -8.80275 -8.70945 -7.92417 -7.84731 -6.77785 -6.12963 -3.90480 1.41605 1.51740 3.18853 3.29032 3.31999 3.44374 3.79325 4.24785 4.32645 4.43051 4.80455 4.87656 4.99681 5.07241 5.13711 5.27995 5.35337 5.48673 5.59202 5.62013 5.68969 5.77449 5.82719 5.97984 6.08010 6.13019 6.13918 6.32758 6.51923 6.54674 6.58471 6.70946 6.73359 6.97494 7.09764 7.35652 7.59313 7.87759 8.01989 8.51566 8.84116 9.21291 9.40963 10.12761 10.81216 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.005929 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.975407 B = 4721.079992 C = 5588.415166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.077 3.923 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.455 4.455 8 H 0.072 0.928 9 C 0.198 3.802 10 C -0.227 4.227 11 N -0.458 5.458 12 C 0.155 3.845 13 C -0.095 4.095 14 C -0.105 4.105 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.098 4.098 19 C 0.196 3.804 20 C -0.073 4.073 21 C -0.154 4.154 22 C -0.171 4.171 23 N -0.445 5.445 24 H 0.265 0.735 25 H 0.139 0.861 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 -13.663 -3.184 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.490 4.490 8 H 0.090 0.910 9 C 0.075 3.925 10 C -0.352 4.352 11 N -0.149 5.149 12 C 0.030 3.970 13 C -0.096 4.096 14 C -0.124 4.124 15 C -0.141 4.141 16 C -0.141 4.141 17 C -0.141 4.141 18 C -0.117 4.117 19 C -0.064 4.064 20 C -0.093 4.093 21 C -0.191 4.191 22 C -0.209 4.209 23 N -0.168 5.168 24 H 0.075 0.925 25 H 0.157 0.843 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.008 -12.973 -3.164 13.688 hybrid contribution 1.193 0.071 -0.143 1.204 sum -1.815 -12.902 -3.307 13.442 Atomic orbital electron populations 1.70082 1.06538 1.26785 1.36644 1.25728 0.94722 0.99940 0.93707 0.86569 0.79918 0.81856 0.79230 1.19608 1.20823 1.19578 1.18386 0.93081 0.88462 1.49115 0.90972 1.18398 0.87439 0.91064 0.95645 1.22265 0.90914 0.89850 1.32192 1.44506 1.06818 1.03419 1.60141 1.20324 1.03101 0.81083 0.92450 1.20263 0.93599 0.98540 0.97223 1.21114 0.97011 0.98564 0.95687 1.21089 0.98343 1.00236 0.94410 1.21109 0.92798 1.00620 0.99575 1.21107 0.97680 0.99838 0.95440 1.21047 0.98188 0.98151 0.94326 1.22266 0.86601 0.88208 1.09304 1.20018 0.86677 0.98310 1.04272 1.22904 0.97041 1.00945 0.98255 1.22946 1.02085 1.03405 0.92501 1.71097 1.15205 1.10655 1.19845 0.92471 0.84339 0.89784 0.90060 0.86084 0.86224 0.86381 0.86240 0.86144 0.88138 0.86593 0.89657 0.89556 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.55 11.94 55.54 0.66 -21.89 16 2 C 0.08 2.16 5.49 -17.35 -0.10 2.06 16 3 Si 0.90 20.65 29.56 -169.99 -5.02 15.62 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.46 -13.28 9.38 -37.89 -0.36 -13.63 16 8 H 0.07 2.00 7.84 -52.49 -0.41 1.58 16 9 C 0.20 5.73 6.69 -84.58 -0.57 5.17 16 10 C -0.23 -5.69 11.62 -15.34 -0.18 -5.87 16 11 N -0.46 -10.03 2.73 -113.97 -0.31 -10.34 16 12 C 0.15 2.54 5.90 -5.19 -0.03 2.51 16 13 C -0.09 -1.47 5.46 -104.62 -0.57 -2.04 16 14 C -0.11 -1.50 9.38 -39.58 -0.37 -1.87 16 15 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 16 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 17 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 18 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 19 C 0.20 4.63 7.43 -154.85 -1.15 3.48 16 20 C -0.07 -1.36 5.74 -91.77 -0.53 -1.89 16 21 C -0.15 -2.75 10.13 -26.73 -0.27 -3.02 16 22 C -0.17 -2.89 10.23 -26.74 -0.27 -3.16 16 23 N -0.45 -12.56 9.02 -8.18 -0.07 -12.64 16 24 H 0.26 7.14 8.30 -40.82 -0.34 6.80 16 25 H 0.14 3.18 8.06 -52.49 -0.42 2.76 16 26 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 27 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 28 H 0.12 1.57 5.67 -52.49 -0.30 1.27 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.10 1.59 5.20 -51.93 -0.27 1.32 16 34 H 0.12 2.50 7.86 -51.93 -0.41 2.10 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.16 8.14 -51.92 -0.42 0.73 16 37 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -33.11 317.37 -10.66 -43.78 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.73 Total: 6.68 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -5.97 Total: -25.99 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.28 Total: -44.87 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.11 -10.66 -43.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261188482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.460 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds