Wall clock time and date at job start Mon Mar 30 2020 07:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48495 * 109.47055 * 239.99988 * 3 2 1 5 5 H 1.48502 * 109.46654 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46899 * 119.99884 * 3 2 1 7 7 C 1.39721 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.41227 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.39092 * 126.43506 * 179.97438 * 9 7 2 11 11 N 1.36102 * 106.36858 * 179.77300 * 10 9 7 12 12 C 1.46504 * 126.10925 * 180.24603 * 11 10 9 13 13 C 1.50698 * 109.47082 * 264.97863 * 12 11 10 14 14 C 1.38237 * 119.99978 * 269.72799 * 13 12 11 15 15 C 1.38233 * 119.99890 * 179.76777 * 14 13 12 16 16 C 1.38237 * 119.99776 * 0.50406 * 15 14 13 17 17 C 1.38233 * 120.00103 * 359.74727 * 16 15 14 18 18 C 1.38232 * 120.00220 * 0.02562 * 17 16 15 19 19 C 1.35961 * 107.77954 * 0.23089 * 11 10 9 20 20 C 1.50704 * 125.20005 * 180.02562 * 19 11 10 21 21 C 1.53005 * 117.49811 * 188.61702 * 20 19 11 22 22 C 1.52994 * 59.99889 * 252.51206 * 21 20 19 23 23 N 1.30156 * 109.59885 * 359.97438 * 19 11 10 24 24 H 0.96998 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.08002 * 126.81948 * 0.04306 * 10 9 7 26 26 H 1.08995 * 109.47099 * 24.97812 * 12 11 10 27 27 H 1.08994 * 109.46916 * 144.97851 * 12 11 10 28 28 H 1.07998 * 120.00260 * 359.97438 * 14 13 12 29 29 H 1.07998 * 120.00401 * 180.22672 * 15 14 13 30 30 H 1.08004 * 120.00081 * 179.72296 * 16 15 14 31 31 H 1.08007 * 119.99961 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.00060 * 179.97438 * 18 17 16 33 33 H 1.08995 * 115.55210 * 334.32543 * 20 19 11 34 34 H 1.08999 * 117.49641 * 0.02562 * 21 20 19 35 35 H 1.08999 * 117.49807 * 145.01676 * 21 20 19 36 36 H 1.09007 * 117.49725 * 252.50849 * 22 21 20 37 37 H 1.08992 * 117.52196 * 107.48521 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.0980 1.6963 -1.2125 5 1 1.2792 2.7464 -0.0006 6 1 3.0979 1.6963 1.2125 7 6 2.0087 -1.2100 -0.0005 8 1 3.0887 -1.2101 -0.0010 9 6 1.3025 -2.4330 -0.0016 10 6 1.8585 -3.7080 -0.0028 11 7 0.8148 -4.5816 0.0016 12 6 0.9124 -6.0433 0.0074 13 6 0.8206 -6.5585 -1.4059 14 6 -0.4109 -6.8791 -1.9460 15 6 -0.4956 -7.3470 -3.2440 16 6 0.6521 -7.5043 -3.9982 17 6 1.8840 -7.1886 -3.4564 18 6 1.9683 -6.7161 -2.1600 19 6 -0.3345 -3.8552 0.0001 20 6 -1.7268 -4.4322 0.0043 21 6 -2.8934 -3.4638 -0.2016 22 6 -2.6376 -4.0709 1.1793 23 7 -0.0486 -2.5855 -0.0045 24 1 -0.4850 0.8400 0.0004 25 1 2.9097 -3.9557 -0.0023 26 1 1.8664 -6.3421 0.4416 27 1 0.0974 -6.4595 0.5995 28 1 -1.3071 -6.7608 -1.3551 29 1 -1.4579 -7.5941 -3.6672 30 1 0.5864 -7.8741 -5.0109 31 1 2.7808 -7.3118 -4.0456 32 1 2.9308 -6.4699 -1.7365 33 1 -1.8224 -5.4327 -0.4175 34 1 -2.6538 -2.4096 -0.3405 35 1 -3.7566 -3.8272 -0.7592 36 1 -3.3328 -4.8336 1.5303 37 1 -2.2298 -3.4163 1.9495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261188482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:37 Heat of formation + Delta-G solvation = 92.365439 kcal Electronic energy + Delta-G solvation = -19736.697386 eV Core-core repulsion = 16865.881981 eV Total energy + Delta-G solvation = -2870.815405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.01855 -39.97733 -37.65060 -35.70158 -34.42186 -31.83009 -31.57197 -30.29641 -27.66118 -26.50789 -23.87265 -23.37296 -23.15040 -22.42274 -21.42540 -19.87949 -18.87412 -17.79289 -17.11837 -16.51611 -16.40191 -16.17540 -15.91497 -15.18423 -15.02395 -14.59022 -14.32848 -14.12765 -13.85137 -13.49518 -13.24158 -12.86247 -12.84320 -12.71826 -12.28823 -12.21110 -12.12390 -11.84763 -11.79255 -11.50881 -11.21719 -10.98848 -9.99958 -9.82697 -9.79096 -9.63522 -8.75995 -8.18338 -6.03192 0.34535 0.49184 1.36018 1.40254 1.52445 1.67789 2.33570 2.45412 2.58989 2.98106 3.20228 3.76007 3.78671 3.81145 3.84699 3.96640 4.08559 4.15567 4.23036 4.29606 4.40604 4.47526 4.65732 4.67303 4.72720 4.83905 4.98263 5.05905 5.12573 5.23981 5.34765 5.48356 5.53331 5.55552 5.59467 5.63383 5.94897 6.06680 6.09556 6.44182 6.96186 7.16946 7.35714 8.19002 8.77262 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.005929 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.975407 B = 4721.079992 C = 5588.415166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.026 3.974 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.495 4.495 8 H 0.071 0.929 9 C 0.144 3.856 10 C -0.222 4.222 11 N -0.451 5.451 12 C 0.150 3.850 13 C -0.116 4.116 14 C -0.116 4.116 15 C -0.127 4.127 16 C -0.122 4.122 17 C -0.131 4.131 18 C -0.119 4.119 19 C 0.193 3.807 20 C -0.085 4.085 21 C -0.155 4.155 22 C -0.150 4.150 23 N -0.496 5.496 24 H 0.267 0.733 25 H 0.153 0.847 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.068 0.932 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -15.733 -4.068 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.188 4.188 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.020 3.980 10 C -0.349 4.349 11 N -0.140 5.140 12 C 0.028 3.972 13 C -0.118 4.118 14 C -0.134 4.134 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.068 4.068 20 C -0.105 4.105 21 C -0.193 4.193 22 C -0.189 4.189 23 N -0.219 5.219 24 H 0.076 0.924 25 H 0.170 0.830 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.151 0.849 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.891 -15.104 -4.046 16.113 hybrid contribution 1.469 0.500 0.084 1.554 sum -2.422 -14.603 -3.962 15.324 Atomic orbital electron populations 1.70238 1.08230 1.27694 1.38049 1.26631 0.95655 1.03609 0.92909 0.85355 0.78451 0.76735 0.79487 1.18920 1.19889 1.18759 1.18744 0.93319 0.89957 1.51013 0.91070 1.18903 0.88614 0.92543 0.97926 1.22455 0.92218 0.89700 1.30503 1.44711 1.05397 1.05588 1.58260 1.20668 1.04858 0.77524 0.94185 1.20204 0.94630 1.00252 0.96672 1.21341 0.96813 0.98618 0.96629 1.21481 0.99846 0.99268 0.93860 1.21536 0.92292 0.99366 1.00849 1.21426 0.99162 0.99295 0.94973 1.21229 0.98128 0.99007 0.95371 1.23083 0.88969 0.87625 1.07145 1.20303 0.84120 0.99734 1.06308 1.22870 0.98055 0.98422 0.99915 1.22975 1.01499 1.03400 0.90979 1.70990 1.15168 1.13671 1.22065 0.92386 0.82984 0.88546 0.87702 0.84871 0.83454 0.83463 0.84223 0.86373 0.84545 0.91299 0.85473 0.84632 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.85 11.94 21.79 0.26 -49.59 16 2 C 0.03 1.50 5.49 85.17 0.47 1.96 16 3 Si 0.98 43.95 29.56 68.60 2.03 45.98 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.49 -30.33 9.38 23.36 0.22 -30.12 16 8 H 0.07 4.14 7.84 -2.91 -0.02 4.12 16 9 C 0.14 8.76 6.69 39.44 0.26 9.02 16 10 C -0.22 -11.44 11.62 84.24 0.98 -10.46 16 11 N -0.45 -19.79 2.73 -514.48 -1.40 -21.19 16 12 C 0.15 4.70 5.90 85.63 0.51 5.21 16 13 C -0.12 -3.42 5.46 -19.87 -0.11 -3.53 16 14 C -0.12 -2.97 9.38 22.27 0.21 -2.76 16 15 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 16 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 17 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 18 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 19 C 0.19 9.23 7.43 137.93 1.02 10.25 16 20 C -0.09 -3.04 5.74 -11.54 -0.07 -3.11 16 21 C -0.15 -5.38 10.13 30.59 0.31 -5.07 16 22 C -0.15 -4.79 10.23 30.59 0.31 -4.48 16 23 N -0.50 -29.24 9.02 -179.79 -1.62 -30.87 16 24 H 0.27 15.07 8.30 -92.71 -0.77 14.30 16 25 H 0.15 7.17 8.06 -2.91 -0.02 7.15 16 26 H 0.10 2.74 8.07 -2.39 -0.02 2.72 16 27 H 0.10 2.77 7.85 -2.39 -0.02 2.75 16 28 H 0.13 2.97 5.67 -2.91 -0.02 2.95 16 29 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 33 H 0.14 3.84 5.20 -2.39 -0.01 3.82 16 34 H 0.07 3.09 7.86 -2.39 -0.02 3.07 16 35 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.14 3.01 8.14 -2.38 -0.02 2.99 16 37 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -77.50 317.37 5.33 -72.17 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 1.07 Total: 27.61 kcal Atomic # 6 Polarization: -49.12 SS G_CDS: 5.00 Total: -44.12 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -2.77 Total: -101.64 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -77.50 5.33 -72.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261188482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.536 kcal (2) G-P(sol) polarization free energy of solvation -77.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds