Wall clock time and date at job start Mon Mar 30 2020 07:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00245 * 2 1 4 4 H 1.48504 * 109.47442 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47275 * 300.00319 * 3 2 1 6 6 H 1.48504 * 109.47379 * 60.00240 * 3 2 1 7 7 C 1.38814 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00394 * 200.55930 * 7 2 1 9 9 N 1.36936 * 119.99987 * 20.56462 * 7 2 1 10 10 C 1.46491 * 120.00382 * 38.05674 * 9 7 2 11 11 C 1.50705 * 109.47141 * 90.00092 * 10 9 7 12 12 C 1.39334 * 119.12363 * 95.02407 * 11 10 9 13 13 C 1.36580 * 119.93275 * 179.97438 * 12 11 10 14 14 C 1.40769 * 118.15217 * 0.04170 * 13 12 11 15 15 C 1.40434 * 121.38303 * 179.97438 * 14 13 12 16 16 C 1.36139 * 119.61189 * 179.97438 * 15 14 13 17 17 C 1.39349 * 120.87299 * 359.97438 * 16 15 14 18 18 C 1.36071 * 121.06646 * 0.02562 * 17 16 15 19 19 C 1.40598 * 119.74989 * 359.97438 * 18 17 16 20 20 N 1.31080 * 119.12751 * 275.00446 * 11 10 9 21 21 C 1.46504 * 119.99558 * 218.06257 * 9 7 2 22 22 C 1.52993 * 117.50415 * 13.98063 * 21 9 7 23 23 C 1.53002 * 117.49852 * 305.31409 * 21 9 7 24 24 H 0.96995 * 119.99582 * 354.96354 * 1 2 3 25 25 H 1.09002 * 109.47161 * 330.00935 * 10 9 7 26 26 H 1.08995 * 109.47729 * 210.00034 * 10 9 7 27 27 H 1.08001 * 120.03358 * 0.02562 * 12 11 10 28 28 H 1.07996 * 120.92509 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.18975 * 0.02608 * 15 14 13 30 30 H 1.08006 * 119.55712 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.46783 * 180.02562 * 17 16 15 32 32 H 1.08004 * 120.12622 * 179.72264 * 18 17 16 33 33 H 1.09009 * 115.54762 * 159.65023 * 21 9 7 34 34 H 1.09006 * 117.49779 * 359.97438 * 22 21 9 35 35 H 1.08999 * 117.50193 * 145.02099 * 22 21 9 36 36 H 1.09005 * 117.49663 * 214.98031 * 23 21 9 37 37 H 1.08999 * 117.49724 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0386 -1.2319 0.3290 9 7 1.3909 -2.3505 -0.4155 10 6 0.4601 -2.3124 -1.5460 11 6 1.2155 -2.5552 -2.8272 12 6 1.2765 -3.8477 -3.3440 13 6 1.9562 -4.0864 -4.5044 14 6 2.5805 -2.9990 -5.1441 15 6 3.2975 -3.1673 -6.3398 16 6 3.8868 -2.0903 -6.9281 17 6 3.7878 -0.8218 -6.3599 18 6 3.1009 -0.6227 -5.2022 19 6 2.4785 -1.7102 -4.5645 20 7 1.7975 -1.5448 -3.4260 21 6 1.6593 -3.6171 0.2701 22 6 2.3676 -3.5510 1.6246 23 6 3.1190 -4.0592 0.3915 24 1 -0.4849 0.8368 0.0737 25 1 -0.0212 -1.3353 -1.5877 26 1 -0.2977 -3.0855 -1.4190 27 1 0.7860 -4.6599 -2.8280 28 1 2.0140 -5.0819 -4.9190 29 1 3.3802 -4.1453 -6.7903 30 1 4.4384 -2.2209 -7.8475 31 1 4.2638 0.0168 -6.8461 32 1 3.0376 0.3662 -4.7727 33 1 0.9077 -4.3945 0.1326 34 1 2.6344 -2.5651 2.0055 35 1 2.0824 -4.2852 2.3781 36 1 3.3277 -5.1275 0.3343 37 1 3.8796 -3.4079 -0.0391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265477488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:43 Heat of formation + Delta-G solvation = 103.991764 kcal Electronic energy + Delta-G solvation = -19948.500989 eV Core-core repulsion = 17078.189740 eV Total energy + Delta-G solvation = -2870.311250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28366 -37.38429 -36.42504 -33.53297 -32.94544 -31.28114 -29.71045 -29.43791 -26.22902 -24.00254 -23.27921 -21.80313 -21.50791 -21.37705 -19.84628 -17.65903 -16.82576 -16.52961 -15.72674 -15.18457 -14.45114 -14.34076 -14.10319 -13.84905 -13.80121 -13.36004 -12.89084 -12.73447 -12.37376 -11.89413 -11.31707 -11.28245 -11.16814 -10.96117 -10.79697 -10.62632 -10.58717 -10.31670 -10.10816 -9.98524 -9.66850 -9.32779 -8.70884 -8.43706 -8.22879 -7.84325 -6.53164 -5.85403 -3.39145 0.83167 1.28714 2.44910 3.33405 3.39325 3.47225 3.50105 4.42990 4.61820 4.80375 4.92231 4.95356 5.11676 5.21565 5.24498 5.32839 5.41920 5.52289 5.58214 5.69584 5.86721 5.98615 6.10073 6.13861 6.21096 6.34893 6.37221 6.46369 6.52802 6.58104 6.62147 6.69254 6.76954 6.95361 7.01310 7.16642 7.33428 7.54339 7.81703 8.46307 8.78990 9.10241 9.73985 10.27440 11.16855 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.007406 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.089314 B = 3779.890494 C = 4798.364920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.029 3.971 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.060 0.940 9 N -0.534 5.534 10 C 0.182 3.818 11 C 0.165 3.835 12 C -0.158 4.158 13 C -0.077 4.077 14 C -0.119 4.119 15 C -0.096 4.096 16 C -0.134 4.134 17 C -0.113 4.113 18 C -0.091 4.091 19 C 0.132 3.868 20 N -0.453 5.453 21 C 0.126 3.874 22 C -0.191 4.191 23 C -0.228 4.228 24 H 0.258 0.742 25 H 0.117 0.883 26 H 0.048 0.952 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -7.103 -9.798 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.173 4.173 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.077 0.923 9 N -0.249 5.249 10 C 0.055 3.945 11 C 0.010 3.990 12 C -0.179 4.179 13 C -0.103 4.103 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.153 4.153 17 C -0.133 4.133 18 C -0.110 4.110 19 C 0.010 3.990 20 N -0.162 5.162 21 C 0.017 3.983 22 C -0.230 4.230 23 C -0.269 4.269 24 H 0.068 0.932 25 H 0.134 0.866 26 H 0.066 0.934 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.347 -6.025 -9.539 11.768 hybrid contribution 0.794 -0.111 -0.391 0.892 sum 4.141 -6.135 -9.930 12.385 Atomic orbital electron populations 1.69857 1.05731 1.26278 1.50465 1.25117 0.94989 0.98685 0.98490 0.86258 0.79797 0.83618 0.77235 1.20150 1.21027 1.21748 1.18857 0.94128 0.84751 1.40643 0.92284 1.43244 1.50802 1.02773 1.28087 1.20141 0.89815 1.04479 0.80076 1.23199 0.92851 0.87645 0.95322 1.21879 1.00635 0.98733 0.96607 1.21300 0.95853 0.97787 0.95318 1.18813 1.01416 0.94717 0.97233 1.20879 0.97304 0.98778 0.94501 1.20733 1.01208 0.92938 1.00383 1.20765 0.99399 0.97183 0.95988 1.20855 0.96709 0.98471 0.94935 1.19126 0.95827 0.91715 0.92343 1.68156 1.07676 1.34169 1.06180 1.21150 0.91493 0.90381 0.95313 1.23074 1.06401 1.02156 0.91362 1.23368 0.99927 0.98928 1.04692 0.93203 0.86574 0.93408 0.85373 0.85434 0.86150 0.86379 0.86059 0.85143 0.89236 0.88202 0.90682 0.90951 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.82 11.45 55.49 0.64 -24.18 16 2 C 0.03 0.78 4.97 -17.43 -0.09 0.70 16 3 Si 0.90 22.14 29.60 -169.99 -5.03 17.11 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.86 8.04 -15.06 -0.12 -6.98 16 8 H 0.06 1.65 7.23 -52.49 -0.38 1.27 16 9 N -0.53 -12.98 2.76 -167.02 -0.46 -13.45 16 10 C 0.18 4.18 5.62 -5.20 -0.03 4.16 16 11 C 0.17 3.52 6.36 -82.50 -0.52 2.99 16 12 C -0.16 -2.76 9.62 -39.77 -0.38 -3.14 16 13 C -0.08 -1.20 9.90 -39.22 -0.39 -1.59 16 14 C -0.12 -2.03 5.74 -106.80 -0.61 -2.65 16 15 C -0.10 -1.32 9.78 -39.51 -0.39 -1.71 16 16 C -0.13 -1.72 9.95 -39.92 -0.40 -2.12 16 17 C -0.11 -1.58 9.94 -39.95 -0.40 -1.98 16 18 C -0.09 -1.58 9.98 -39.47 -0.39 -1.98 16 19 C 0.13 2.63 6.60 -84.86 -0.56 2.07 16 20 N -0.45 -10.29 10.24 -7.22 -0.07 -10.37 16 21 C 0.13 2.64 6.61 -67.93 -0.45 2.19 16 22 C -0.19 -3.79 9.81 -26.69 -0.26 -4.05 16 23 C -0.23 -4.43 10.09 -26.69 -0.27 -4.70 16 24 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 25 H 0.12 3.08 5.52 -51.93 -0.29 2.79 16 26 H 0.05 0.98 7.92 -51.93 -0.41 0.57 16 27 H 0.13 1.90 8.05 -52.49 -0.42 1.48 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.09 1.67 8.10 -51.92 -0.42 1.25 16 34 H 0.10 2.21 6.95 -51.93 -0.36 1.85 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.78 8.01 -51.93 -0.42 1.37 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -30.04 315.07 -10.24 -40.28 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.79 Total: 4.65 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -5.26 Total: -18.79 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.10 Total: -48.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.04 -10.24 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265477488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.268 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds