Wall clock time and date at job start Mon Mar 30 2020 07:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00245 * 2 1 4 4 H 1.48504 * 109.47442 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47275 * 300.00319 * 3 2 1 6 6 H 1.48504 * 109.47379 * 60.00240 * 3 2 1 7 7 C 1.38814 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00394 * 200.55930 * 7 2 1 9 9 N 1.36936 * 119.99987 * 20.56462 * 7 2 1 10 10 C 1.46491 * 120.00382 * 38.05674 * 9 7 2 11 11 C 1.50705 * 109.47141 * 90.00092 * 10 9 7 12 12 C 1.39334 * 119.12363 * 95.02407 * 11 10 9 13 13 C 1.36580 * 119.93275 * 179.97438 * 12 11 10 14 14 C 1.40769 * 118.15217 * 0.04170 * 13 12 11 15 15 C 1.40434 * 121.38303 * 179.97438 * 14 13 12 16 16 C 1.36139 * 119.61189 * 179.97438 * 15 14 13 17 17 C 1.39349 * 120.87299 * 359.97438 * 16 15 14 18 18 C 1.36071 * 121.06646 * 0.02562 * 17 16 15 19 19 C 1.40598 * 119.74989 * 359.97438 * 18 17 16 20 20 N 1.31080 * 119.12751 * 275.00446 * 11 10 9 21 21 C 1.46504 * 119.99558 * 218.06257 * 9 7 2 22 22 C 1.52993 * 117.50415 * 13.98063 * 21 9 7 23 23 C 1.53002 * 117.49852 * 305.31409 * 21 9 7 24 24 H 0.96995 * 119.99582 * 354.96354 * 1 2 3 25 25 H 1.09002 * 109.47161 * 330.00935 * 10 9 7 26 26 H 1.08995 * 109.47729 * 210.00034 * 10 9 7 27 27 H 1.08001 * 120.03358 * 0.02562 * 12 11 10 28 28 H 1.07996 * 120.92509 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.18975 * 0.02608 * 15 14 13 30 30 H 1.08006 * 119.55712 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.46783 * 180.02562 * 17 16 15 32 32 H 1.08004 * 120.12622 * 179.72264 * 18 17 16 33 33 H 1.09009 * 115.54762 * 159.65023 * 21 9 7 34 34 H 1.09006 * 117.49779 * 359.97438 * 22 21 9 35 35 H 1.08999 * 117.50193 * 145.02099 * 22 21 9 36 36 H 1.09005 * 117.49663 * 214.98031 * 23 21 9 37 37 H 1.08999 * 117.49724 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0386 -1.2319 0.3290 9 7 1.3909 -2.3505 -0.4155 10 6 0.4601 -2.3124 -1.5460 11 6 1.2155 -2.5552 -2.8272 12 6 1.2765 -3.8477 -3.3440 13 6 1.9562 -4.0864 -4.5044 14 6 2.5805 -2.9990 -5.1441 15 6 3.2975 -3.1673 -6.3398 16 6 3.8868 -2.0903 -6.9281 17 6 3.7878 -0.8218 -6.3599 18 6 3.1009 -0.6227 -5.2022 19 6 2.4785 -1.7102 -4.5645 20 7 1.7975 -1.5448 -3.4260 21 6 1.6593 -3.6171 0.2701 22 6 2.3676 -3.5510 1.6246 23 6 3.1190 -4.0592 0.3915 24 1 -0.4849 0.8368 0.0737 25 1 -0.0212 -1.3353 -1.5877 26 1 -0.2977 -3.0855 -1.4190 27 1 0.7860 -4.6599 -2.8280 28 1 2.0140 -5.0819 -4.9190 29 1 3.3802 -4.1453 -6.7903 30 1 4.4384 -2.2209 -7.8475 31 1 4.2638 0.0168 -6.8461 32 1 3.0376 0.3662 -4.7727 33 1 0.9077 -4.3945 0.1326 34 1 2.6344 -2.5651 2.0055 35 1 2.0824 -4.2852 2.3781 36 1 3.3277 -5.1275 0.3343 37 1 3.8796 -3.4079 -0.0391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265477488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:42 Heat of formation + Delta-G solvation = 87.612745 kcal Electronic energy + Delta-G solvation = -19949.211237 eV Core-core repulsion = 17078.189740 eV Total energy + Delta-G solvation = -2871.021497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59255 -38.96073 -37.81269 -35.29781 -34.26274 -33.04340 -31.14713 -30.77689 -27.94839 -25.79953 -24.54518 -23.15305 -22.95892 -22.83112 -21.63469 -18.94524 -18.36976 -18.04251 -17.38476 -16.70944 -16.32123 -15.75879 -15.45186 -15.37234 -15.19120 -14.64868 -14.53587 -13.89641 -13.85038 -13.62398 -13.09929 -12.80828 -12.73984 -12.47177 -12.38568 -12.26937 -12.19051 -12.04907 -11.89855 -11.44460 -11.39337 -10.93760 -10.45605 -10.12749 -9.51879 -9.09960 -8.45991 -7.87596 -5.46325 -0.38570 0.00648 1.19452 1.35208 1.41470 1.47918 2.10795 2.44797 3.16511 3.21776 3.42354 3.55316 3.64550 3.78037 3.97250 4.06798 4.14655 4.29879 4.36214 4.38135 4.48643 4.51387 4.59070 4.70791 4.83012 4.93255 4.99633 5.07541 5.14750 5.20868 5.30180 5.33907 5.49866 5.54281 5.54713 5.60169 5.68630 5.82965 6.08150 6.44907 7.12066 7.36040 7.81673 8.29633 9.09260 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.007406 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.089314 B = 3779.890494 C = 4798.364920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.014 4.014 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.250 4.250 8 H 0.039 0.961 9 N -0.551 5.551 10 C 0.185 3.815 11 C 0.146 3.854 12 C -0.172 4.172 13 C -0.057 4.057 14 C -0.134 4.134 15 C -0.089 4.089 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.133 4.133 19 C 0.096 3.904 20 N -0.507 5.507 21 C 0.106 3.894 22 C -0.190 4.190 23 C -0.209 4.209 24 H 0.254 0.746 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.177 0.823 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 -10.178 -12.423 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.213 4.213 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.057 0.943 9 N -0.267 5.267 10 C 0.059 3.941 11 C -0.009 4.009 12 C -0.192 4.192 13 C -0.083 4.083 14 C -0.137 4.137 15 C -0.108 4.108 16 C -0.145 4.145 17 C -0.113 4.113 18 C -0.152 4.152 19 C -0.025 4.025 20 N -0.217 5.217 21 C -0.002 4.002 22 C -0.229 4.229 23 C -0.249 4.249 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.172 0.828 28 H 0.194 0.806 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.171 0.829 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.850 -9.112 -12.170 15.958 hybrid contribution 0.444 0.793 0.203 0.932 sum 5.294 -8.319 -11.967 15.506 Atomic orbital electron populations 1.69949 1.06435 1.26195 1.52587 1.25580 0.95576 1.00675 0.99424 0.85572 0.78694 0.81388 0.76923 1.20390 1.21957 1.20852 1.18764 0.93233 0.86233 1.39793 0.94310 1.43332 1.50731 1.03178 1.29490 1.19917 0.90193 1.02777 0.81257 1.22908 0.93287 0.89425 0.95252 1.21978 1.01953 0.97466 0.97843 1.21817 0.93252 0.99405 0.93814 1.19193 1.02055 0.93809 0.98615 1.21364 0.95472 1.01113 0.92820 1.21278 1.00155 0.91712 1.01342 1.21199 0.96835 0.99266 0.93993 1.20933 0.99581 0.97526 0.97177 1.19514 0.96767 0.94036 0.92228 1.67980 1.09397 1.35999 1.08293 1.21478 0.93098 0.89803 0.95822 1.23072 1.06309 1.01561 0.91957 1.23272 0.97914 1.00283 1.03453 0.93687 0.90756 0.91588 0.82789 0.80565 0.81918 0.81877 0.82943 0.87125 0.86374 0.91402 0.87340 0.87250 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.02 11.45 21.65 0.25 -53.77 16 2 C -0.01 -0.82 4.97 84.86 0.42 -0.40 16 3 Si 0.95 48.02 29.60 68.60 2.03 50.05 16 4 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 5 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.25 -14.18 8.04 84.03 0.68 -13.51 16 8 H 0.04 2.31 7.23 -2.91 -0.02 2.29 16 9 N -0.55 -27.69 2.76 -682.35 -1.89 -29.58 16 10 C 0.19 8.90 5.62 85.64 0.48 9.38 16 11 C 0.15 6.40 6.36 42.94 0.27 6.67 16 12 C -0.17 -5.75 9.62 22.15 0.21 -5.54 16 13 C -0.06 -1.61 9.90 22.50 0.22 -1.38 16 14 C -0.13 -4.26 5.74 -21.28 -0.12 -4.38 16 15 C -0.09 -2.02 9.78 22.32 0.22 -1.80 16 16 C -0.13 -2.63 9.95 22.05 0.22 -2.41 16 17 C -0.09 -2.37 9.94 22.03 0.22 -2.15 16 18 C -0.13 -4.74 9.98 22.34 0.22 -4.52 16 19 C 0.10 3.89 6.60 40.29 0.27 4.16 16 20 N -0.51 -24.28 10.24 -176.76 -1.81 -26.09 16 21 C 0.11 4.39 6.61 44.99 0.30 4.68 16 22 C -0.19 -7.45 9.81 30.62 0.30 -7.14 16 23 C -0.21 -7.85 10.09 30.62 0.31 -7.54 16 24 H 0.25 14.61 8.32 -92.71 -0.77 13.84 16 25 H 0.07 4.22 5.52 -2.39 -0.01 4.21 16 26 H 0.07 2.78 7.92 -2.39 -0.02 2.77 16 27 H 0.15 4.16 8.05 -2.91 -0.02 4.14 16 28 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.12 4.16 8.10 -2.38 -0.02 4.14 16 34 H 0.07 3.09 6.95 -2.38 -0.02 3.08 16 35 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 37 H 0.05 2.30 8.01 -2.39 -0.02 2.28 16 Total: -1.00 -72.14 315.07 3.86 -68.27 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.06 Total: 17.00 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.22 Total: -25.89 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -3.45 Total: -109.44 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -72.14 3.86 -68.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265477488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.887 kcal (2) G-P(sol) polarization free energy of solvation -72.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds