Wall clock time and date at job start Mon Mar 30 2020 07:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 126.03561 * 2 1 4 4 N 1.31777 * 114.50005 * 179.97438 * 3 2 1 5 5 C 1.29022 * 117.12915 * 359.97438 * 4 3 2 6 6 C 1.50693 * 124.92274 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47096 * 89.97776 * 6 5 4 8 8 N 1.46901 * 109.47294 * 180.02562 * 7 6 5 9 9 C 1.46899 * 110.99893 * 66.04279 * 8 7 6 10 10 C 1.46894 * 110.99930 * 189.99962 * 8 7 6 11 11 H 1.09004 * 109.47146 * 188.83886 * 10 8 7 12 12 C 1.53004 * 109.47070 * 308.83469 * 10 8 7 13 13 C 1.52996 * 109.47479 * 68.83791 * 10 8 7 14 14 C 1.50701 * 109.46946 * 62.92449 * 13 10 8 15 15 H 1.07992 * 120.00240 * 355.14335 * 14 13 10 16 16 C 1.37880 * 119.99868 * 175.13560 * 14 13 10 17 17 N 1.31517 * 120.00138 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00117 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46986 * 60.00098 * 18 16 14 20 20 H 1.48497 * 109.47073 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47074 * 300.00317 * 18 16 14 22 22 S 1.70982 * 110.16554 * 359.72715 * 5 4 3 23 23 H 1.08998 * 109.47255 * 90.03221 * 1 2 3 24 24 H 1.09004 * 109.47540 * 330.02622 * 1 2 3 25 25 H 1.08998 * 109.47254 * 210.02561 * 1 2 3 26 26 H 1.07998 * 122.74690 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.47762 * 209.97800 * 6 5 4 28 28 H 1.08998 * 109.47406 * 329.98031 * 6 5 4 29 29 H 1.09006 * 109.46727 * 300.00050 * 7 6 5 30 30 H 1.08991 * 109.47389 * 60.00081 * 7 6 5 31 31 H 1.08995 * 109.47360 * 53.95235 * 9 8 7 32 32 H 1.09005 * 109.46763 * 173.95064 * 9 8 7 33 33 H 1.09002 * 109.47185 * 293.94591 * 9 8 7 34 34 H 1.08997 * 109.46934 * 180.02562 * 12 10 8 35 35 H 1.08997 * 109.47001 * 300.00197 * 12 10 8 36 36 H 1.08995 * 109.46736 * 60.00786 * 12 10 8 37 37 H 1.09003 * 109.47716 * 182.92534 * 13 10 8 38 38 H 1.08997 * 109.47133 * 302.93127 * 13 10 8 39 39 H 0.97002 * 120.00232 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5843 0.8172 0.0005 5 6 3.9311 -0.4255 0.0015 6 6 5.3531 -0.9243 0.0017 7 6 5.8348 -1.0914 1.4443 8 7 7.2212 -1.5771 1.4445 9 6 8.1322 -0.5689 0.8864 10 6 7.6396 -1.9744 2.7954 11 1 8.7100 -2.1801 2.7985 12 6 7.3351 -0.8414 3.7775 13 6 6.8774 -3.2325 3.2160 14 6 7.2328 -4.3680 2.2911 15 1 7.8705 -4.1900 1.4379 16 6 6.7440 -5.6341 2.5342 17 7 5.9671 -5.8507 3.5731 18 14 7.1851 -7.0417 1.3881 19 1 8.6589 -7.2232 1.3716 20 1 6.5374 -8.2899 1.8652 21 1 6.7093 -6.7307 0.0163 22 16 2.5437 -1.4247 0.0095 23 1 -0.3634 -0.0006 -1.0276 24 1 -0.3634 0.8902 0.5134 25 1 -0.3633 -0.8897 0.5142 26 1 1.9023 2.0875 -0.0004 27 1 5.4014 -1.8851 -0.5110 28 1 5.9905 -0.2054 -0.5131 29 1 5.7866 -0.1307 1.9570 30 1 5.1976 -1.8103 1.9591 31 1 8.0019 0.3731 1.4189 32 1 9.1620 -0.9091 0.9965 33 1 7.9090 -0.4228 -0.1705 34 1 7.6460 -1.1360 4.7798 35 1 7.8782 0.0549 3.4778 36 1 6.2647 -0.6358 3.7745 37 1 7.1492 -3.4976 4.2378 38 1 5.8054 -3.0427 3.1629 39 1 5.6235 -6.7415 3.7444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276331792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:58 Heat of formation + Delta-G solvation = 35.171071 kcal Electronic energy + Delta-G solvation = -18396.113516 eV Core-core repulsion = 15658.261928 eV Total energy + Delta-G solvation = -2737.851588 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.64649 -37.99192 -33.80337 -32.76343 -31.48039 -29.96511 -27.28471 -26.73455 -25.14817 -23.92376 -22.89981 -21.73995 -19.16428 -18.66816 -17.92665 -16.14885 -15.43123 -15.12176 -14.80073 -14.62642 -14.33274 -14.12882 -13.48836 -13.16344 -13.01814 -12.99065 -12.48835 -12.39773 -11.86680 -11.77550 -11.60136 -11.44095 -11.31905 -11.08565 -10.88114 -10.63471 -10.40857 -10.33067 -9.90420 -9.47969 -9.17470 -9.11439 -8.96500 -8.64592 -8.23810 -7.49866 -5.86746 -3.84547 0.77944 1.43567 1.88366 2.89545 3.41898 3.45796 3.49252 4.19112 4.57601 4.69115 4.88369 5.05812 5.27501 5.33176 5.40410 5.50016 5.51884 5.62844 5.70512 5.78003 5.80596 5.86994 5.94263 6.02968 6.06726 6.17203 6.28765 6.39222 6.43122 6.58109 6.70601 6.99604 7.54050 7.67255 7.83609 7.89689 8.02273 8.14366 8.61112 9.22132 9.77170 11.25223 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005568 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.782380 B = 5027.110353 C = 5990.182115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.242 4.242 3 C 0.031 3.969 4 N -0.480 5.480 5 C 0.061 3.939 6 C -0.043 4.043 7 C 0.066 3.934 8 N -0.514 5.514 9 C 0.021 3.979 10 C 0.086 3.914 11 H 0.071 0.929 12 C -0.183 4.183 13 C 0.030 3.970 14 C -0.491 4.491 15 H 0.062 0.938 16 C 0.051 3.949 17 N -0.904 5.904 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.278 1.278 22 S 0.139 5.861 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.169 0.831 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.022 0.978 38 H 0.014 0.986 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 12.437 -6.743 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.363 4.363 3 C -0.120 4.120 4 N -0.194 5.194 5 C -0.217 4.217 6 C -0.084 4.084 7 C -0.063 4.063 8 N -0.237 5.237 9 C -0.128 4.128 10 C -0.021 4.021 11 H 0.090 0.910 12 C -0.242 4.242 13 C -0.007 4.007 14 C -0.529 4.529 15 H 0.080 0.920 16 C -0.148 4.148 17 N -0.545 5.545 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.204 1.204 22 S 0.394 5.606 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.186 0.814 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.025 11.189 -6.955 14.931 hybrid contribution -0.210 0.825 -0.040 0.852 sum -7.236 12.014 -6.995 15.672 Atomic orbital electron populations 1.20178 0.87087 1.03246 1.02618 1.26018 1.01612 0.95779 1.12929 1.21629 0.87168 0.99793 1.03431 1.66295 1.17543 1.18878 1.16655 1.27090 1.01341 0.91074 1.02150 1.20349 0.86274 1.02050 0.99761 1.22027 0.91661 0.98831 0.93809 1.62068 1.00506 1.37500 1.23616 1.22434 0.97434 0.93447 0.99442 1.21961 1.00283 0.95400 0.84495 0.91038 1.22524 1.01203 0.99397 1.01110 1.19194 0.94823 0.90148 0.96536 1.21153 1.29146 0.92330 1.10289 0.91982 1.25009 0.95677 0.98761 0.95394 1.69955 1.34694 1.21733 1.28121 0.86717 0.78465 0.81746 0.81365 1.20498 1.21694 1.20366 1.84347 0.98376 1.10472 1.67427 0.90838 0.90547 0.91121 0.81361 0.88507 0.89284 0.95077 0.89478 0.96465 0.91904 0.92160 0.92509 0.94149 0.92967 0.95987 0.96799 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.42 36.00 0.38 -0.24 16 2 C -0.24 -2.93 6.60 -35.92 -0.24 -3.17 16 3 C 0.03 0.40 11.25 -19.19 -0.22 0.19 16 4 N -0.48 -7.43 10.54 -11.87 -0.13 -7.55 16 5 C 0.06 0.94 6.64 -13.46 -0.09 0.85 16 6 C -0.04 -0.67 5.72 -27.88 -0.16 -0.83 16 7 C 0.07 1.17 3.80 -3.82 -0.01 1.16 16 8 N -0.51 -9.63 4.31 -234.89 -1.01 -10.65 16 9 C 0.02 0.32 8.87 60.06 0.53 0.86 16 10 C 0.09 1.76 2.27 -67.72 -0.15 1.60 16 11 H 0.07 1.47 7.87 -51.93 -0.41 1.06 16 12 C -0.18 -3.22 8.41 37.16 0.31 -2.91 16 13 C 0.03 0.76 4.40 -27.88 -0.12 0.63 16 14 C -0.49 -13.57 8.80 -34.44 -0.30 -13.88 16 15 H 0.06 1.71 7.69 -52.49 -0.40 1.30 16 16 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 S 0.14 1.95 23.18 -107.50 -2.49 -0.54 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.09 1.29 6.69 -51.93 -0.35 0.95 16 29 H 0.03 0.55 6.77 -51.93 -0.35 0.19 16 30 H 0.09 1.76 6.18 -51.93 -0.32 1.44 16 31 H 0.02 0.25 7.08 -51.93 -0.37 -0.12 16 32 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 33 H 0.06 0.84 6.77 -51.93 -0.35 0.49 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.63 7.02 -51.93 -0.36 0.27 16 36 H 0.05 0.93 6.54 -51.93 -0.34 0.59 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.01 0.37 6.36 -51.93 -0.33 0.04 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -30.62 326.89 -9.25 -39.87 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.09 Total: -2.20 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.17 Total: -14.38 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.40 Total: -44.52 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.49 Total: -0.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.62 -9.25 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276331792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.040 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds