Wall clock time and date at job start Mon Mar 30 2020 07:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 126.03561 * 2 1 4 4 N 1.31777 * 114.50005 * 179.97438 * 3 2 1 5 5 C 1.29022 * 117.12915 * 359.97438 * 4 3 2 6 6 C 1.50693 * 124.92274 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47096 * 89.97776 * 6 5 4 8 8 N 1.46901 * 109.47294 * 180.02562 * 7 6 5 9 9 C 1.46899 * 110.99893 * 66.04279 * 8 7 6 10 10 C 1.46894 * 110.99930 * 189.99962 * 8 7 6 11 11 H 1.09004 * 109.47146 * 188.83886 * 10 8 7 12 12 C 1.53004 * 109.47070 * 308.83469 * 10 8 7 13 13 C 1.52996 * 109.47479 * 68.83791 * 10 8 7 14 14 C 1.50701 * 109.46946 * 62.92449 * 13 10 8 15 15 H 1.07992 * 120.00240 * 355.14335 * 14 13 10 16 16 C 1.37880 * 119.99868 * 175.13560 * 14 13 10 17 17 N 1.31517 * 120.00138 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00117 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46986 * 60.00098 * 18 16 14 20 20 H 1.48497 * 109.47073 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47074 * 300.00317 * 18 16 14 22 22 S 1.70982 * 110.16554 * 359.72715 * 5 4 3 23 23 H 1.08998 * 109.47255 * 90.03221 * 1 2 3 24 24 H 1.09004 * 109.47540 * 330.02622 * 1 2 3 25 25 H 1.08998 * 109.47254 * 210.02561 * 1 2 3 26 26 H 1.07998 * 122.74690 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.47762 * 209.97800 * 6 5 4 28 28 H 1.08998 * 109.47406 * 329.98031 * 6 5 4 29 29 H 1.09006 * 109.46727 * 300.00050 * 7 6 5 30 30 H 1.08991 * 109.47389 * 60.00081 * 7 6 5 31 31 H 1.08995 * 109.47360 * 53.95235 * 9 8 7 32 32 H 1.09005 * 109.46763 * 173.95064 * 9 8 7 33 33 H 1.09002 * 109.47185 * 293.94591 * 9 8 7 34 34 H 1.08997 * 109.46934 * 180.02562 * 12 10 8 35 35 H 1.08997 * 109.47001 * 300.00197 * 12 10 8 36 36 H 1.08995 * 109.46736 * 60.00786 * 12 10 8 37 37 H 1.09003 * 109.47716 * 182.92534 * 13 10 8 38 38 H 1.08997 * 109.47133 * 302.93127 * 13 10 8 39 39 H 0.97002 * 120.00232 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5843 0.8172 0.0005 5 6 3.9311 -0.4255 0.0015 6 6 5.3531 -0.9243 0.0017 7 6 5.8348 -1.0914 1.4443 8 7 7.2212 -1.5771 1.4445 9 6 8.1322 -0.5689 0.8864 10 6 7.6396 -1.9744 2.7954 11 1 8.7100 -2.1801 2.7985 12 6 7.3351 -0.8414 3.7775 13 6 6.8774 -3.2325 3.2160 14 6 7.2328 -4.3680 2.2911 15 1 7.8705 -4.1900 1.4379 16 6 6.7440 -5.6341 2.5342 17 7 5.9671 -5.8507 3.5731 18 14 7.1851 -7.0417 1.3881 19 1 8.6589 -7.2232 1.3716 20 1 6.5374 -8.2899 1.8652 21 1 6.7093 -6.7307 0.0163 22 16 2.5437 -1.4247 0.0095 23 1 -0.3634 -0.0006 -1.0276 24 1 -0.3634 0.8902 0.5134 25 1 -0.3633 -0.8897 0.5142 26 1 1.9023 2.0875 -0.0004 27 1 5.4014 -1.8851 -0.5110 28 1 5.9905 -0.2054 -0.5131 29 1 5.7866 -0.1307 1.9570 30 1 5.1976 -1.8103 1.9591 31 1 8.0019 0.3731 1.4189 32 1 9.1620 -0.9091 0.9965 33 1 7.9090 -0.4228 -0.1705 34 1 7.6460 -1.1360 4.7798 35 1 7.8782 0.0549 3.4778 36 1 6.2647 -0.6358 3.7745 37 1 7.1492 -3.4976 4.2378 38 1 5.8054 -3.0427 3.1629 39 1 5.6235 -6.7415 3.7444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276331792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:58 Heat of formation + Delta-G solvation = 16.389407 kcal Electronic energy + Delta-G solvation = -18396.927950 eV Core-core repulsion = 15658.261928 eV Total energy + Delta-G solvation = -2738.666022 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73568 -39.47720 -35.32530 -34.42940 -32.84097 -31.36162 -29.12932 -27.87329 -26.36643 -25.32388 -24.51506 -23.22600 -20.26945 -20.20566 -19.01934 -18.30807 -16.78881 -16.64332 -16.22847 -16.05703 -15.62107 -15.41818 -14.69331 -14.62277 -14.14029 -13.90855 -13.84793 -13.64686 -13.42552 -13.31933 -13.11776 -12.95957 -12.72256 -12.60310 -12.46214 -12.24085 -12.03870 -11.79144 -11.68512 -11.07865 -11.01372 -10.61260 -10.43605 -10.20859 -9.68218 -8.95197 -8.06130 -6.10784 -0.28670 0.38075 0.82258 1.44759 1.47156 1.54499 1.83361 2.50499 2.97242 3.27339 3.44327 4.00767 4.07687 4.12855 4.18141 4.26033 4.29472 4.45081 4.49869 4.58250 4.65865 4.72534 4.74089 4.86280 4.91281 4.94096 5.07507 5.09483 5.15490 5.19640 5.24677 5.33816 5.52232 5.72199 5.92867 6.30799 6.41643 6.53920 6.75485 7.03547 7.55132 9.05901 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005568 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.782380 B = 5027.110353 C = 5990.182115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.221 4.221 3 C 0.013 3.987 4 N -0.492 5.492 5 C 0.040 3.960 6 C -0.033 4.033 7 C 0.078 3.922 8 N -0.533 5.533 9 C 0.023 3.977 10 C 0.094 3.906 11 H 0.071 0.929 12 C -0.173 4.173 13 C 0.037 3.963 14 C -0.498 4.498 15 H 0.062 0.938 16 C -0.004 4.004 17 N -0.941 5.941 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.270 1.270 22 S 0.110 5.890 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.198 0.802 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.045 0.955 37 H -0.007 1.007 38 H -0.009 1.009 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 13.713 -8.121 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.343 4.343 3 C -0.137 4.137 4 N -0.207 5.207 5 C -0.237 4.237 6 C -0.074 4.074 7 C -0.051 4.051 8 N -0.256 5.256 9 C -0.125 4.125 10 C -0.014 4.014 11 H 0.089 0.911 12 C -0.232 4.232 13 C -0.001 4.001 14 C -0.536 4.536 15 H 0.081 0.919 16 C -0.200 4.200 17 N -0.583 5.583 18 Si 0.780 3.220 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.196 1.196 22 S 0.365 5.635 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.215 0.785 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.011 0.989 38 H 0.009 0.991 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.262 12.489 -8.344 16.683 hybrid contribution -0.214 0.483 0.398 0.662 sum -7.476 12.972 -7.946 16.950 Atomic orbital electron populations 1.20373 0.84288 1.04483 1.04136 1.26470 1.03143 0.94084 1.10571 1.22096 0.86425 1.01332 1.03877 1.66282 1.19089 1.18841 1.16491 1.26955 1.01333 0.91409 1.04030 1.20174 0.87047 1.02027 0.98131 1.21843 0.90697 0.97611 0.94999 1.61963 1.01523 1.39556 1.22575 1.22482 0.96858 0.92861 1.00262 1.21669 0.99151 0.94242 0.86355 0.91128 1.22387 1.01112 0.99252 1.00441 1.19044 0.94037 0.92303 0.94684 1.21473 1.28594 0.93201 1.10376 0.91949 1.25843 0.95658 1.01569 0.96914 1.70094 1.36001 1.22278 1.29961 0.85670 0.78547 0.78381 0.79423 1.19490 1.21518 1.19563 1.84426 0.99171 1.12160 1.67791 0.89029 0.88295 0.90820 0.78493 0.89349 0.88010 0.94835 0.92901 0.95309 0.91305 0.90515 0.92379 0.91615 0.93628 0.98874 0.99119 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.42 71.23 0.74 -0.30 16 2 C -0.22 -4.98 6.60 24.64 0.16 -4.82 16 3 C 0.01 0.30 11.25 83.66 0.94 1.25 16 4 N -0.49 -14.73 10.54 -191.45 -2.02 -16.74 16 5 C 0.04 1.23 6.64 88.52 0.59 1.82 16 6 C -0.03 -1.02 5.72 29.85 0.17 -0.85 16 7 C 0.08 2.79 3.80 86.30 0.33 3.12 16 8 N -0.53 -19.75 4.31 -897.05 -3.86 -23.61 16 9 C 0.02 0.67 8.87 127.69 1.13 1.80 16 10 C 0.09 3.84 2.27 44.92 0.10 3.94 16 11 H 0.07 2.87 7.87 -2.38 -0.02 2.86 16 12 C -0.17 -5.98 8.41 71.98 0.61 -5.37 16 13 C 0.04 1.91 4.40 29.85 0.13 2.04 16 14 C -0.50 -28.07 8.80 25.60 0.23 -27.84 16 15 H 0.06 3.45 7.69 -2.91 -0.02 3.42 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 18 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 22 S 0.11 3.10 23.18 -56.49 -1.31 1.79 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 27 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 28 H 0.10 2.84 6.69 -2.39 -0.02 2.82 16 29 H 0.03 1.17 6.77 -2.38 -0.02 1.15 16 30 H 0.05 2.24 6.18 -2.39 -0.01 2.22 16 31 H 0.03 0.76 7.08 -2.39 -0.02 0.75 16 32 H 0.07 1.90 7.90 -2.38 -0.02 1.88 16 33 H 0.08 1.96 6.77 -2.39 -0.02 1.94 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.93 7.02 -2.39 -0.02 1.92 16 36 H 0.04 1.62 6.54 -2.39 -0.02 1.60 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H -0.01 -0.53 6.36 -2.39 -0.02 -0.55 16 39 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -66.61 326.89 1.74 -64.88 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.02 Total: 8.97 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 5.59 Total: -24.99 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -5.60 Total: -97.86 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.31 Total: 1.79 kcal Total: -66.61 1.74 -64.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276331792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.265 kcal (2) G-P(sol) polarization free energy of solvation -66.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds