Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47127 * 2 1 4 4 C 1.46906 * 111.00065 * 160.02107 * 3 2 1 5 5 C 1.50701 * 109.47090 * 200.56012 * 4 3 2 6 6 H 1.07998 * 119.99738 * 4.96363 * 5 4 3 7 7 C 1.37870 * 119.99962 * 184.95888 * 5 4 3 8 8 N 1.31516 * 120.00281 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 120.00102 * 0.02562 * 7 5 4 10 10 H 1.48488 * 109.47306 * 89.99240 * 9 7 5 11 11 H 1.48499 * 109.47198 * 209.99862 * 9 7 5 12 12 H 1.48508 * 109.46758 * 329.99530 * 9 7 5 13 13 C 1.40011 * 111.00343 * 283.97948 * 3 2 1 14 14 C 1.38660 * 120.09238 * 119.68226 * 13 3 2 15 15 C 1.50703 * 120.01004 * 0.02562 * 14 13 3 16 16 C 1.38360 * 119.98970 * 180.28013 * 14 13 3 17 17 Cl 1.73596 * 119.91921 * 179.72444 * 16 14 13 18 18 C 1.38356 * 120.16556 * 359.44304 * 16 14 13 19 19 C 1.38279 * 120.17649 * 0.28456 * 18 16 14 20 20 C 1.38649 * 120.01232 * 359.97438 * 19 18 16 21 21 N 1.40084 * 120.08357 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47261 * 305.56255 * 1 2 3 23 23 H 1.09007 * 109.46907 * 65.56266 * 1 2 3 24 24 H 1.08993 * 109.47095 * 185.55806 * 1 2 3 25 25 H 1.08998 * 109.47108 * 240.00136 * 2 1 3 26 26 H 1.09000 * 109.47068 * 120.00240 * 2 1 3 27 27 H 1.08999 * 109.46972 * 320.56408 * 4 3 2 28 28 H 1.08998 * 109.46966 * 80.56211 * 4 3 2 29 29 H 0.97002 * 120.00130 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47254 * 270.27587 * 15 14 13 31 31 H 1.09000 * 109.46616 * 30.26923 * 15 14 13 32 32 H 1.08991 * 109.47577 * 150.27118 * 15 14 13 33 33 H 1.07999 * 119.91380 * 180.29975 * 18 16 14 34 34 H 1.08002 * 119.99302 * 180.02562 * 19 18 16 35 35 H 0.97008 * 119.99909 * 354.83555 * 21 20 19 36 36 H 0.97000 * 120.00360 * 174.83693 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4104 1.4517 0.4686 5 6 3.7167 2.8516 0.9349 6 1 2.9336 3.5948 0.9633 7 6 4.9967 3.1836 1.3252 8 7 5.2640 4.4052 1.7327 9 14 6.3513 1.8983 1.2755 10 1 7.0147 1.9294 -0.0526 11 1 7.3502 2.1905 2.3348 12 1 5.7658 0.5529 1.5049 13 6 1.8892 1.9634 -1.2684 14 6 1.1043 3.0935 -1.4398 15 6 0.3904 3.7014 -0.2599 16 6 0.9722 3.6599 -2.6952 17 17 -0.0167 5.0705 -2.9090 18 6 1.6311 3.1083 -3.7796 19 6 2.4202 1.9847 -3.6155 20 6 2.5534 1.4079 -2.3617 21 7 3.3520 0.2693 -2.1938 22 1 -0.3633 0.5977 0.8360 23 1 -0.3633 0.4252 -0.9357 24 1 -0.3633 -1.0228 0.0995 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.5491 0.7549 1.2952 28 1 4.0819 1.1855 -0.3476 29 1 6.1646 4.6388 2.0069 30 1 -0.5962 3.2490 -0.1597 31 1 0.9673 3.5195 0.6468 32 1 0.2839 4.7751 -0.4135 33 1 1.5290 3.5566 -4.7568 34 1 2.9335 1.5568 -4.4639 35 1 3.7520 -0.1607 -2.9659 36 1 3.5050 -0.0892 -1.3056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304400830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = 36.658202 kcal Electronic energy + Delta-G solvation = -19177.704661 eV Core-core repulsion = 16302.040759 eV Total energy + Delta-G solvation = -2875.663902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.01669 -36.78338 -35.58688 -34.15565 -32.64770 -31.39879 -30.33056 -28.43072 -26.73393 -25.75122 -22.56346 -21.87004 -20.90747 -20.36247 -17.17215 -16.61672 -16.24480 -15.82344 -14.95452 -14.45582 -14.41127 -14.08528 -13.45306 -13.22836 -12.89542 -12.44923 -12.41116 -12.15231 -11.95862 -11.77384 -11.59978 -11.34529 -11.31659 -10.97287 -10.69778 -10.59460 -10.50971 -10.23917 -9.89790 -9.65537 -9.30956 -8.58214 -8.04230 -7.58756 -7.06232 -6.04841 -4.01415 1.78946 1.86550 2.70715 3.23386 3.28897 3.31745 4.07285 4.17979 4.38573 4.59534 5.22107 5.25402 5.36587 5.45074 5.63748 5.74503 5.81966 5.85256 6.08370 6.15794 6.25434 6.31765 6.35732 6.50338 6.51269 6.62756 6.65544 6.73336 6.93508 7.02450 7.19393 7.54769 7.64215 7.79846 7.97683 8.23096 8.62567 9.08329 9.55943 11.08271 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.007936 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.102167 B = 3527.598480 C = 3970.601878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.037 3.963 3 N -0.485 5.485 4 C 0.155 3.845 5 C -0.503 4.503 6 H 0.087 0.913 7 C 0.070 3.930 8 N -0.896 5.896 9 Si 0.870 3.130 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.069 3.931 14 C 0.000 4.000 15 C -0.110 4.110 16 C -0.088 4.088 17 Cl -0.089 7.089 18 C -0.075 4.075 19 C -0.193 4.193 20 C 0.193 3.807 21 N -0.880 5.880 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.028 0.972 28 H -0.001 1.001 29 H 0.263 0.737 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.390 0.610 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 -7.506 -8.965 14.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 N -0.206 5.206 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.105 0.895 7 C -0.132 4.132 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.195 1.195 13 C -0.030 4.030 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.116 4.116 17 Cl -0.060 7.060 18 C -0.094 4.094 19 C -0.217 4.217 20 C 0.087 3.913 21 N -0.424 5.424 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.016 0.984 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.218 0.782 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.122 -6.986 -8.531 13.695 hybrid contribution 1.727 -1.198 -0.630 2.194 sum -6.396 -8.184 -9.161 13.850 Atomic orbital electron populations 1.21703 0.95382 1.00445 1.02287 1.22342 0.96331 0.89819 1.00597 1.59501 1.24447 1.15714 1.20981 1.20472 0.82567 0.99682 0.94228 1.21013 0.96053 0.94579 1.42456 0.89549 1.24873 0.98142 0.94967 0.95214 1.69881 1.20725 1.18165 1.44775 0.86952 0.82741 0.82567 0.77936 1.20487 1.21154 1.19490 1.17970 0.99901 0.97181 0.87939 1.19343 0.95117 0.92640 0.93129 1.20783 0.99198 0.99331 0.97349 1.20343 1.03086 0.93378 0.94833 1.98294 1.69575 1.40886 1.97282 1.20561 0.96077 0.95331 0.97434 1.20249 1.06103 0.99633 0.95689 1.18537 0.90584 0.87845 0.94330 1.43112 1.56904 1.30945 1.11408 0.91786 0.93197 0.93274 0.94279 0.91107 0.95386 0.98367 0.92719 0.92013 0.88525 0.92049 0.85834 0.86208 0.78198 0.76542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.96 37.16 0.37 -1.61 16 2 C 0.04 0.58 5.11 -3.82 -0.02 0.56 16 3 N -0.49 -9.53 3.29 -172.27 -0.57 -10.10 16 4 C 0.16 3.54 3.20 -4.97 -0.02 3.52 16 5 C -0.50 -13.87 9.55 -34.44 -0.33 -14.20 16 6 H 0.09 2.61 6.52 -52.49 -0.34 2.26 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 9 Si 0.87 21.08 27.37 -169.99 -4.65 16.43 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.14 6.69 56.52 0.38 -5.77 16 13 C 0.07 1.33 3.80 -83.51 -0.32 1.02 16 14 C 0.00 0.00 5.90 -104.42 -0.62 -0.62 16 15 C -0.11 -2.02 9.36 36.01 0.34 -1.69 16 16 C -0.09 -1.53 6.31 -39.49 -0.25 -1.78 16 17 Cl -0.09 -1.40 27.28 -51.86 -1.41 -2.81 16 18 C -0.07 -1.18 9.82 -39.52 -0.39 -1.57 16 19 C -0.19 -3.04 9.89 -39.41 -0.39 -3.43 16 20 C 0.19 3.37 6.05 -83.48 -0.51 2.87 16 21 N -0.88 -13.21 7.24 32.55 0.24 -12.97 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.73 7.86 -51.93 -0.41 0.32 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.59 5.17 -51.93 -0.27 0.32 16 26 H 0.07 1.09 7.58 -51.93 -0.39 0.70 16 27 H 0.03 0.64 6.98 -51.93 -0.36 0.28 16 28 H 0.00 -0.03 4.50 -51.93 -0.23 -0.26 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 2.03 5.93 -51.93 -0.31 1.73 16 32 H 0.06 1.09 6.90 -51.93 -0.36 0.74 16 33 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.39 4.63 8.85 -40.82 -0.36 4.27 16 36 H 0.40 6.29 4.56 -40.82 -0.19 6.10 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -30.03 298.15 -7.85 -37.88 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.49 Total: 8.58 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.22 Total: -15.03 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.44 Total: -49.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.65 Total: 16.43 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -1.41 Total: -2.81 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.03 -7.85 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304400830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.538 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds