Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47127 * 2 1 4 4 C 1.46906 * 111.00065 * 160.02107 * 3 2 1 5 5 C 1.50701 * 109.47090 * 200.56012 * 4 3 2 6 6 H 1.07998 * 119.99738 * 4.96363 * 5 4 3 7 7 C 1.37870 * 119.99962 * 184.95888 * 5 4 3 8 8 N 1.31516 * 120.00281 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 120.00102 * 0.02562 * 7 5 4 10 10 H 1.48488 * 109.47306 * 89.99240 * 9 7 5 11 11 H 1.48499 * 109.47198 * 209.99862 * 9 7 5 12 12 H 1.48508 * 109.46758 * 329.99530 * 9 7 5 13 13 C 1.40011 * 111.00343 * 283.97948 * 3 2 1 14 14 C 1.38660 * 120.09238 * 119.68226 * 13 3 2 15 15 C 1.50703 * 120.01004 * 0.02562 * 14 13 3 16 16 C 1.38360 * 119.98970 * 180.28013 * 14 13 3 17 17 Cl 1.73596 * 119.91921 * 179.72444 * 16 14 13 18 18 C 1.38356 * 120.16556 * 359.44304 * 16 14 13 19 19 C 1.38279 * 120.17649 * 0.28456 * 18 16 14 20 20 C 1.38649 * 120.01232 * 359.97438 * 19 18 16 21 21 N 1.40084 * 120.08357 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47261 * 305.56255 * 1 2 3 23 23 H 1.09007 * 109.46907 * 65.56266 * 1 2 3 24 24 H 1.08993 * 109.47095 * 185.55806 * 1 2 3 25 25 H 1.08998 * 109.47108 * 240.00136 * 2 1 3 26 26 H 1.09000 * 109.47068 * 120.00240 * 2 1 3 27 27 H 1.08999 * 109.46972 * 320.56408 * 4 3 2 28 28 H 1.08998 * 109.46966 * 80.56211 * 4 3 2 29 29 H 0.97002 * 120.00130 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47254 * 270.27587 * 15 14 13 31 31 H 1.09000 * 109.46616 * 30.26923 * 15 14 13 32 32 H 1.08991 * 109.47577 * 150.27118 * 15 14 13 33 33 H 1.07999 * 119.91380 * 180.29975 * 18 16 14 34 34 H 1.08002 * 119.99302 * 180.02562 * 19 18 16 35 35 H 0.97008 * 119.99909 * 354.83555 * 21 20 19 36 36 H 0.97000 * 120.00360 * 174.83693 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4104 1.4517 0.4686 5 6 3.7167 2.8516 0.9349 6 1 2.9336 3.5948 0.9633 7 6 4.9967 3.1836 1.3252 8 7 5.2640 4.4052 1.7327 9 14 6.3513 1.8983 1.2755 10 1 7.0147 1.9294 -0.0526 11 1 7.3502 2.1905 2.3348 12 1 5.7658 0.5529 1.5049 13 6 1.8892 1.9634 -1.2684 14 6 1.1043 3.0935 -1.4398 15 6 0.3904 3.7014 -0.2599 16 6 0.9722 3.6599 -2.6952 17 17 -0.0167 5.0705 -2.9090 18 6 1.6311 3.1083 -3.7796 19 6 2.4202 1.9847 -3.6155 20 6 2.5534 1.4079 -2.3617 21 7 3.3520 0.2693 -2.1938 22 1 -0.3633 0.5977 0.8360 23 1 -0.3633 0.4252 -0.9357 24 1 -0.3633 -1.0228 0.0995 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.5491 0.7549 1.2952 28 1 4.0819 1.1855 -0.3476 29 1 6.1646 4.6388 2.0069 30 1 -0.5962 3.2490 -0.1597 31 1 0.9673 3.5195 0.6468 32 1 0.2839 4.7751 -0.4135 33 1 1.5290 3.5566 -4.7568 34 1 2.9335 1.5568 -4.4639 35 1 3.7520 -0.1607 -2.9659 36 1 3.5050 -0.0892 -1.3056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304400830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = 17.968262 kcal Electronic energy + Delta-G solvation = -19178.515117 eV Core-core repulsion = 16302.040759 eV Total energy + Delta-G solvation = -2876.474358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.36935 -38.13256 -36.91280 -35.44836 -34.69807 -32.69218 -31.84449 -29.95811 -28.23571 -27.24906 -23.97146 -23.53983 -22.23268 -21.75480 -18.99644 -18.10128 -17.63474 -17.16578 -16.55325 -16.03504 -15.70323 -15.62212 -14.91145 -14.56604 -14.40111 -14.15877 -13.94587 -13.58361 -13.29289 -13.25327 -12.92779 -12.86869 -12.62809 -12.44306 -12.32925 -12.22197 -11.81894 -11.75115 -11.56342 -11.39681 -10.88626 -10.71189 -9.39957 -9.07202 -8.32887 -8.21539 -6.22862 0.47329 0.53461 1.32546 1.34416 1.41049 1.43810 2.35760 2.79086 2.91947 3.11782 3.21102 3.95929 4.12495 4.20468 4.40317 4.48030 4.56384 4.65400 4.74592 4.75692 4.87541 4.92836 4.99252 5.03036 5.15585 5.22455 5.35388 5.40579 5.49136 5.55601 5.68986 5.77985 6.03672 6.36859 6.64822 6.78708 6.88345 6.90656 7.38899 8.95036 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.007936 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.102167 B = 3527.598480 C = 3970.601878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.034 3.966 3 N -0.496 5.496 4 C 0.165 3.835 5 C -0.503 4.503 6 H 0.043 0.957 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.940 3.060 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.242 1.242 13 C 0.042 3.958 14 C -0.025 4.025 15 C -0.099 4.099 16 C -0.103 4.103 17 Cl -0.080 7.080 18 C -0.071 4.071 19 C -0.190 4.190 20 C 0.184 3.816 21 N -0.871 5.871 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.007 0.993 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.407 0.593 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 -9.938 -10.818 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 N -0.218 5.218 4 C 0.039 3.961 5 C -0.542 4.542 6 H 0.062 0.938 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.765 3.235 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.165 1.165 13 C -0.057 4.057 14 C -0.027 4.027 15 C -0.155 4.155 16 C -0.131 4.131 17 Cl -0.052 7.052 18 C -0.090 4.090 19 C -0.213 4.213 20 C 0.076 3.924 21 N -0.416 5.416 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.238 0.762 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.802 -9.458 -10.408 16.083 hybrid contribution 1.505 -0.374 -0.094 1.554 sum -6.297 -9.832 -10.503 15.704 Atomic orbital electron populations 1.21634 0.94047 1.01923 1.01391 1.22465 0.97406 0.87908 1.01492 1.59316 1.22386 1.18060 1.22027 1.20212 0.84958 0.96390 0.94491 1.21307 0.95019 0.96272 1.41571 0.93846 1.25801 1.01101 0.97183 0.95038 1.70063 1.21357 1.20807 1.46891 0.85821 0.79052 0.80776 0.77896 1.19912 1.21356 1.16516 1.18109 1.01355 0.97951 0.88309 1.19518 0.96136 0.93297 0.93799 1.20615 0.99503 0.99341 0.96089 1.20514 1.03813 0.93927 0.94892 1.98289 1.69339 1.40361 1.97191 1.20940 0.94940 0.95081 0.98087 1.20647 1.05472 0.99141 0.96024 1.18676 0.90694 0.88536 0.94453 1.43028 1.56341 1.30188 1.12060 0.92915 0.93933 0.90438 0.92846 0.90563 0.94914 0.97515 0.92848 0.90402 0.91960 0.92324 0.83033 0.82869 0.76231 0.76860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.96 71.98 0.72 -2.80 16 2 C 0.03 1.03 5.11 86.30 0.44 1.47 16 3 N -0.50 -19.32 3.29 -698.93 -2.30 -21.62 16 4 C 0.17 7.41 3.20 85.56 0.27 7.69 16 5 C -0.50 -28.46 9.55 25.60 0.24 -28.22 16 6 H 0.04 2.77 6.52 -2.91 -0.02 2.75 16 7 C 0.01 0.30 5.47 84.65 0.46 0.77 16 8 N -0.95 -59.70 13.96 21.44 0.30 -59.40 16 9 Si 0.94 43.18 27.37 68.60 1.88 45.06 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.24 -9.91 6.69 99.48 0.67 -9.24 16 13 C 0.04 1.58 3.80 38.23 0.15 1.73 16 14 C -0.03 -0.97 5.90 -19.73 -0.12 -1.08 16 15 C -0.10 -3.79 9.36 71.24 0.67 -3.12 16 16 C -0.10 -3.49 6.31 22.33 0.14 -3.35 16 17 Cl -0.08 -2.47 27.28 -2.72 -0.07 -2.55 16 18 C -0.07 -2.08 9.82 22.31 0.22 -1.86 16 19 C -0.19 -5.37 9.89 22.38 0.22 -5.15 16 20 C 0.18 6.00 6.05 38.22 0.23 6.23 16 21 N -0.87 -23.47 7.24 -50.93 -0.37 -23.84 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.04 1.18 7.86 -2.38 -0.02 1.16 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.46 5.17 -2.39 -0.01 1.45 16 26 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 27 H 0.03 1.44 6.98 -2.39 -0.02 1.42 16 28 H 0.01 0.32 4.50 -2.39 -0.01 0.31 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.06 2.80 5.93 -2.39 -0.01 2.79 16 32 H 0.06 2.19 6.90 -2.39 -0.02 2.18 16 33 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.41 8.11 8.85 -92.70 -0.82 7.29 16 36 H 0.40 11.30 4.56 -92.71 -0.42 10.88 16 Total: -1.00 -66.77 298.15 2.92 -63.86 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.17 Total: 26.21 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 3.65 Total: -27.71 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -2.37 Total: -104.87 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.07 Total: -2.55 kcal Total: -66.77 2.92 -63.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304400830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.823 kcal (2) G-P(sol) polarization free energy of solvation -66.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds