Wall clock time and date at job start Mon Mar 30 2020 06:50:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46901 * 109.47127 * 2 1
4 4 C 1.46906 * 111.00065 * 160.02107 * 3 2 1
5 5 C 1.50701 * 109.47090 * 200.56012 * 4 3 2
6 6 H 1.07998 * 119.99738 * 4.96363 * 5 4 3
7 7 C 1.37870 * 119.99962 * 184.95888 * 5 4 3
8 8 N 1.31516 * 120.00281 * 180.02562 * 7 5 4
9 9 Si 1.86808 * 120.00102 * 0.02562 * 7 5 4
10 10 H 1.48488 * 109.47306 * 89.99240 * 9 7 5
11 11 H 1.48499 * 109.47198 * 209.99862 * 9 7 5
12 12 H 1.48508 * 109.46758 * 329.99530 * 9 7 5
13 13 C 1.40011 * 111.00343 * 283.97948 * 3 2 1
14 14 C 1.38660 * 120.09238 * 119.68226 * 13 3 2
15 15 C 1.50703 * 120.01004 * 0.02562 * 14 13 3
16 16 C 1.38360 * 119.98970 * 180.28013 * 14 13 3
17 17 Cl 1.73596 * 119.91921 * 179.72444 * 16 14 13
18 18 C 1.38356 * 120.16556 * 359.44304 * 16 14 13
19 19 C 1.38279 * 120.17649 * 0.28456 * 18 16 14
20 20 C 1.38649 * 120.01232 * 359.97438 * 19 18 16
21 21 N 1.40084 * 120.08357 * 179.97438 * 20 19 18
22 22 H 1.08997 * 109.47261 * 305.56255 * 1 2 3
23 23 H 1.09007 * 109.46907 * 65.56266 * 1 2 3
24 24 H 1.08993 * 109.47095 * 185.55806 * 1 2 3
25 25 H 1.08998 * 109.47108 * 240.00136 * 2 1 3
26 26 H 1.09000 * 109.47068 * 120.00240 * 2 1 3
27 27 H 1.08999 * 109.46972 * 320.56408 * 4 3 2
28 28 H 1.08998 * 109.46966 * 80.56211 * 4 3 2
29 29 H 0.97002 * 120.00130 * 180.02562 * 8 7 5
30 30 H 1.09001 * 109.47254 * 270.27587 * 15 14 13
31 31 H 1.09000 * 109.46616 * 30.26923 * 15 14 13
32 32 H 1.08991 * 109.47577 * 150.27118 * 15 14 13
33 33 H 1.07999 * 119.91380 * 180.29975 * 18 16 14
34 34 H 1.08002 * 119.99302 * 180.02562 * 19 18 16
35 35 H 0.97008 * 119.99909 * 354.83555 * 21 20 19
36 36 H 0.97000 * 120.00360 * 174.83693 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 3.4104 1.4517 0.4686
5 6 3.7167 2.8516 0.9349
6 1 2.9336 3.5948 0.9633
7 6 4.9967 3.1836 1.3252
8 7 5.2640 4.4052 1.7327
9 14 6.3513 1.8983 1.2755
10 1 7.0147 1.9294 -0.0526
11 1 7.3502 2.1905 2.3348
12 1 5.7658 0.5529 1.5049
13 6 1.8892 1.9634 -1.2684
14 6 1.1043 3.0935 -1.4398
15 6 0.3904 3.7014 -0.2599
16 6 0.9722 3.6599 -2.6952
17 17 -0.0167 5.0705 -2.9090
18 6 1.6311 3.1083 -3.7796
19 6 2.4202 1.9847 -3.6155
20 6 2.5534 1.4079 -2.3617
21 7 3.3520 0.2693 -2.1938
22 1 -0.3633 0.5977 0.8360
23 1 -0.3633 0.4252 -0.9357
24 1 -0.3633 -1.0228 0.0995
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8900
27 1 3.5491 0.7549 1.2952
28 1 4.0819 1.1855 -0.3476
29 1 6.1646 4.6388 2.0069
30 1 -0.5962 3.2490 -0.1597
31 1 0.9673 3.5195 0.6468
32 1 0.2839 4.7751 -0.4135
33 1 1.5290 3.5566 -4.7568
34 1 2.9335 1.5568 -4.4639
35 1 3.7520 -0.1607 -2.9659
36 1 3.5050 -0.0892 -1.3056
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000304400830.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:51
Heat of formation + Delta-G solvation = 17.968262 kcal
Electronic energy + Delta-G solvation = -19178.515117 eV
Core-core repulsion = 16302.040759 eV
Total energy + Delta-G solvation = -2876.474358 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.104 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.36935 -38.13256 -36.91280 -35.44836 -34.69807 -32.69218 -31.84449 -29.95811
-28.23571 -27.24906 -23.97146 -23.53983 -22.23268 -21.75480 -18.99644 -18.10128
-17.63474 -17.16578 -16.55325 -16.03504 -15.70323 -15.62212 -14.91145 -14.56604
-14.40111 -14.15877 -13.94587 -13.58361 -13.29289 -13.25327 -12.92779 -12.86869
-12.62809 -12.44306 -12.32925 -12.22197 -11.81894 -11.75115 -11.56342 -11.39681
-10.88626 -10.71189 -9.39957 -9.07202 -8.32887 -8.21539 -6.22862 0.47329
0.53461 1.32546 1.34416 1.41049 1.43810 2.35760 2.79086 2.91947
3.11782 3.21102 3.95929 4.12495 4.20468 4.40317 4.48030 4.56384
4.65400 4.74592 4.75692 4.87541 4.92836 4.99252 5.03036 5.15585
5.22455 5.35388 5.40579 5.49136 5.55601 5.68986 5.77985 6.03672
6.36859 6.64822 6.78708 6.88345 6.90656 7.38899 8.95036
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.016873 B = 0.007936 C = 0.007050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1659.102167 B = 3527.598480 C = 3970.601878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.034 3.966
3 N -0.496 5.496
4 C 0.165 3.835
5 C -0.503 4.503
6 H 0.043 0.957
7 C 0.005 3.995
8 N -0.950 5.950
9 Si 0.940 3.060
10 H -0.274 1.274
11 H -0.288 1.288
12 H -0.242 1.242
13 C 0.042 3.958
14 C -0.025 4.025
15 C -0.099 4.099
16 C -0.103 4.103
17 Cl -0.080 7.080
18 C -0.071 4.071
19 C -0.190 4.190
20 C 0.184 3.816
21 N -0.871 5.871
22 H 0.052 0.948
23 H 0.042 0.958
24 H 0.077 0.923
25 H 0.054 0.946
26 H 0.076 0.924
27 H 0.033 0.967
28 H 0.007 0.993
29 H 0.263 0.737
30 H 0.077 0.923
31 H 0.061 0.939
32 H 0.058 0.942
33 H 0.152 0.848
34 H 0.154 0.846
35 H 0.407 0.593
36 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.547 -9.938 -10.818 16.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.093 4.093
3 N -0.218 5.218
4 C 0.039 3.961
5 C -0.542 4.542
6 H 0.062 0.938
7 C -0.191 4.191
8 N -0.591 5.591
9 Si 0.765 3.235
10 H -0.199 1.199
11 H -0.214 1.214
12 H -0.165 1.165
13 C -0.057 4.057
14 C -0.027 4.027
15 C -0.155 4.155
16 C -0.131 4.131
17 Cl -0.052 7.052
18 C -0.090 4.090
19 C -0.213 4.213
20 C 0.076 3.924
21 N -0.416 5.416
22 H 0.071 0.929
23 H 0.061 0.939
24 H 0.096 0.904
25 H 0.072 0.928
26 H 0.094 0.906
27 H 0.051 0.949
28 H 0.025 0.975
29 H 0.072 0.928
30 H 0.096 0.904
31 H 0.080 0.920
32 H 0.077 0.923
33 H 0.170 0.830
34 H 0.171 0.829
35 H 0.238 0.762
36 H 0.231 0.769
Dipole moment (debyes) X Y Z Total
from point charges -7.802 -9.458 -10.408 16.083
hybrid contribution 1.505 -0.374 -0.094 1.554
sum -6.297 -9.832 -10.503 15.704
Atomic orbital electron populations
1.21634 0.94047 1.01923 1.01391 1.22465 0.97406 0.87908 1.01492
1.59316 1.22386 1.18060 1.22027 1.20212 0.84958 0.96390 0.94491
1.21307 0.95019 0.96272 1.41571 0.93846 1.25801 1.01101 0.97183
0.95038 1.70063 1.21357 1.20807 1.46891 0.85821 0.79052 0.80776
0.77896 1.19912 1.21356 1.16516 1.18109 1.01355 0.97951 0.88309
1.19518 0.96136 0.93297 0.93799 1.20615 0.99503 0.99341 0.96089
1.20514 1.03813 0.93927 0.94892 1.98289 1.69339 1.40361 1.97191
1.20940 0.94940 0.95081 0.98087 1.20647 1.05472 0.99141 0.96024
1.18676 0.90694 0.88536 0.94453 1.43028 1.56341 1.30188 1.12060
0.92915 0.93933 0.90438 0.92846 0.90563 0.94914 0.97515 0.92848
0.90402 0.91960 0.92324 0.83033 0.82869 0.76231 0.76860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.51 9.96 71.98 0.72 -2.80 16
2 C 0.03 1.03 5.11 86.30 0.44 1.47 16
3 N -0.50 -19.32 3.29 -698.93 -2.30 -21.62 16
4 C 0.17 7.41 3.20 85.56 0.27 7.69 16
5 C -0.50 -28.46 9.55 25.60 0.24 -28.22 16
6 H 0.04 2.77 6.52 -2.91 -0.02 2.75 16
7 C 0.01 0.30 5.47 84.65 0.46 0.77 16
8 N -0.95 -59.70 13.96 21.44 0.30 -59.40 16
9 Si 0.94 43.18 27.37 68.60 1.88 45.06 16
10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16
12 H -0.24 -9.91 6.69 99.48 0.67 -9.24 16
13 C 0.04 1.58 3.80 38.23 0.15 1.73 16
14 C -0.03 -0.97 5.90 -19.73 -0.12 -1.08 16
15 C -0.10 -3.79 9.36 71.24 0.67 -3.12 16
16 C -0.10 -3.49 6.31 22.33 0.14 -3.35 16
17 Cl -0.08 -2.47 27.28 -2.72 -0.07 -2.55 16
18 C -0.07 -2.08 9.82 22.31 0.22 -1.86 16
19 C -0.19 -5.37 9.89 22.38 0.22 -5.15 16
20 C 0.18 6.00 6.05 38.22 0.23 6.23 16
21 N -0.87 -23.47 7.24 -50.93 -0.37 -23.84 16
22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
23 H 0.04 1.18 7.86 -2.38 -0.02 1.16 16
24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
25 H 0.05 1.46 5.17 -2.39 -0.01 1.45 16
26 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16
27 H 0.03 1.44 6.98 -2.39 -0.02 1.42 16
28 H 0.01 0.32 4.50 -2.39 -0.01 0.31 16
29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16
30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16
31 H 0.06 2.80 5.93 -2.39 -0.01 2.79 16
32 H 0.06 2.19 6.90 -2.39 -0.02 2.18 16
33 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16
34 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16
35 H 0.41 8.11 8.85 -92.70 -0.82 7.29 16
36 H 0.40 11.30 4.56 -92.71 -0.42 10.88 16
Total: -1.00 -66.77 298.15 2.92 -63.86
By element:
Atomic # 1 Polarization: 26.38 SS G_CDS: -0.17 Total: 26.21 kcal
Atomic # 6 Polarization: -31.35 SS G_CDS: 3.65 Total: -27.71 kcal
Atomic # 7 Polarization: -102.50 SS G_CDS: -2.37 Total: -104.87 kcal
Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal
Atomic # 17 Polarization: -2.47 SS G_CDS: -0.07 Total: -2.55 kcal
Total: -66.77 2.92 -63.86 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000304400830.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.823 kcal
(2) G-P(sol) polarization free energy of solvation -66.773 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.050 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.855 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds