Wall clock time and date at job start Mon Mar 30 2020 07:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33640 * 126.03893 * 2 1 4 4 N 1.31779 * 114.49553 * 179.73179 * 3 2 1 5 5 C 1.29026 * 117.13158 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91995 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47422 * 89.97392 * 6 5 4 8 8 C 1.46898 * 111.00225 * 174.85806 * 7 6 5 9 9 H 1.08997 * 109.46863 * 325.88815 * 8 7 6 10 10 C 1.50696 * 109.47059 * 85.89228 * 8 7 6 11 11 H 1.08004 * 120.00238 * 359.97438 * 10 8 7 12 12 C 1.37881 * 120.00286 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99590 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00115 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47071 * 90.00112 * 14 12 10 16 16 H 1.48501 * 109.47080 * 209.99890 * 14 12 10 17 17 H 1.48498 * 109.47259 * 329.99621 * 14 12 10 18 18 C 1.53007 * 109.47024 * 205.88970 * 8 7 6 19 19 C 1.52995 * 109.47041 * 62.62165 * 18 8 7 20 20 C 1.52996 * 109.47557 * 65.80448 * 19 18 8 21 21 C 1.52995 * 109.47233 * 185.80847 * 19 18 8 22 22 S 1.70978 * 110.16288 * 359.97438 * 5 4 3 23 23 H 1.08997 * 109.46744 * 89.99484 * 1 2 3 24 24 H 1.08991 * 109.47628 * 209.99840 * 1 2 3 25 25 H 1.09003 * 109.47055 * 330.00285 * 1 2 3 26 26 H 1.07993 * 122.75006 * 359.73970 * 3 2 1 27 27 H 1.09005 * 109.46889 * 209.97461 * 6 5 4 28 28 H 1.08996 * 109.47035 * 329.97375 * 6 5 4 29 29 H 1.00900 * 111.00256 * 298.81719 * 7 6 5 30 30 H 0.96996 * 119.99805 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.46876 * 182.61765 * 18 8 7 32 32 H 1.08998 * 109.46797 * 302.61744 * 18 8 7 33 33 H 1.09002 * 109.46867 * 305.80675 * 19 18 8 34 34 H 1.08993 * 109.47656 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47406 * 300.00158 * 20 19 18 36 36 H 1.09002 * 109.46847 * 60.00215 * 20 19 18 37 37 H 1.09006 * 109.47402 * 59.99766 * 21 19 18 38 38 H 1.08996 * 109.47648 * 179.97438 * 21 19 18 39 39 H 1.09004 * 109.46947 * 300.00255 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5844 0.8169 0.0056 5 6 3.9311 -0.4259 0.0098 6 6 5.3531 -0.9247 0.0159 7 7 5.8107 -1.0829 1.4029 8 6 7.1506 -1.6831 1.4500 9 1 7.2600 -2.3924 0.6296 10 6 8.1908 -0.6005 1.3203 11 1 7.8870 0.4304 1.2131 12 6 9.5305 -0.9260 1.3374 13 7 9.9006 -2.1813 1.4674 14 14 10.8199 0.4159 1.1760 15 1 11.1802 0.9211 2.5251 16 1 12.0295 -0.1368 0.5151 17 1 10.2752 1.5301 0.3592 18 6 7.3364 -2.4119 2.7825 19 6 6.3223 -3.5529 2.8854 20 6 6.6312 -4.6074 1.8208 21 6 6.4097 -4.1892 4.2740 22 16 2.5435 -1.4248 0.0075 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.9026 2.0874 -0.0041 27 1 5.4030 -1.8863 -0.4950 28 1 5.9922 -0.2067 -0.4978 29 1 5.7921 -0.2009 1.8926 30 1 10.8430 -2.4104 1.4791 31 1 8.3465 -2.8176 2.8369 32 1 7.1810 -1.7124 3.6039 33 1 5.3174 -3.1611 2.7279 34 1 5.9091 -5.4205 1.8944 35 1 6.5689 -4.1541 0.8315 36 1 7.6361 -4.9992 1.9783 37 1 6.1896 -3.4379 5.0325 38 1 5.6870 -5.0018 4.3475 39 1 7.4147 -4.5809 4.4315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309342042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:51 Heat of formation + Delta-G solvation = 20.076088 kcal Electronic energy + Delta-G solvation = -18424.356123 eV Core-core repulsion = 15685.849968 eV Total energy + Delta-G solvation = -2738.506155 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43640 -36.83215 -34.28883 -32.86523 -32.02842 -29.15189 -26.66467 -26.35182 -24.93979 -24.60251 -22.69730 -20.65391 -18.96670 -18.63318 -17.80858 -16.62238 -15.11753 -15.00093 -14.58342 -14.27259 -13.88963 -13.67461 -13.42289 -13.17301 -12.92868 -12.70588 -12.61969 -12.22085 -11.79506 -11.51601 -11.27236 -11.02774 -11.00683 -10.92955 -10.64598 -10.55587 -10.13311 -10.08277 -9.57297 -9.41777 -9.28238 -8.99356 -8.96211 -8.54089 -8.36162 -7.36016 -6.00953 -4.13003 0.93516 1.58131 2.03647 3.07324 3.27893 3.35144 3.38949 4.39347 4.48104 4.97812 5.12746 5.23263 5.36014 5.38880 5.58419 5.70772 5.82039 5.87936 5.89722 5.95048 6.03996 6.33594 6.33965 6.42960 6.56436 6.59953 6.67729 6.96203 7.02395 7.12899 7.17321 7.44199 7.56835 7.78034 7.99493 8.07063 8.11325 8.26960 8.57432 8.97435 9.54571 10.99222 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.005622 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.227854 B = 4979.270297 C = 6189.112154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.248 4.248 3 C 0.035 3.965 4 N -0.480 5.480 5 C 0.078 3.922 6 C 0.136 3.864 7 N -0.681 5.681 8 C 0.215 3.785 9 H 0.039 0.961 10 C -0.548 4.548 11 H 0.055 0.945 12 C 0.070 3.930 13 N -0.882 5.882 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.092 4.092 19 C -0.093 4.093 20 C -0.133 4.133 21 C -0.142 4.142 22 S 0.127 5.873 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.167 0.833 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.335 0.665 30 H 0.261 0.739 31 H 0.093 0.907 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 -0.616 -1.714 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.370 4.370 3 C -0.116 4.116 4 N -0.194 5.194 5 C -0.200 4.200 6 C 0.003 3.997 7 N -0.312 5.312 8 C 0.108 3.892 9 H 0.057 0.943 10 C -0.587 4.587 11 H 0.073 0.927 12 C -0.133 4.133 13 N -0.520 5.520 14 Si 0.716 3.284 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.131 4.131 19 C -0.112 4.112 20 C -0.191 4.191 21 C -0.199 4.199 22 S 0.381 5.619 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.184 0.816 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.151 0.849 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.443 -2.036 -1.623 14.676 hybrid contribution 1.073 2.459 -0.321 2.703 sum -13.369 0.423 -1.944 13.517 Atomic orbital electron populations 1.20140 0.87310 1.02997 1.02412 1.25934 1.01335 0.95833 1.13889 1.21636 0.87282 0.99715 1.02980 1.66320 1.17347 1.19091 1.16632 1.27388 1.01404 0.90612 1.00601 1.20395 0.85064 0.99957 0.94262 1.60970 1.30276 1.30057 1.09882 1.19229 0.81650 0.93405 0.94926 0.94306 1.21863 0.91912 0.93875 1.51091 0.92721 1.24891 0.98452 0.95247 0.94675 1.69873 1.16325 1.16293 1.49552 0.86668 0.81273 0.82272 0.78233 1.20678 1.21242 1.20046 1.21594 0.99568 0.94526 0.97363 1.21109 1.00997 0.96241 0.92827 1.21732 1.00061 0.97608 0.99656 1.21839 1.00442 0.99471 0.98191 1.83932 0.98795 1.11252 1.67887 0.91056 0.91381 0.90686 0.81558 0.89937 0.91973 0.84873 0.92904 0.88862 0.95087 0.91479 0.95085 0.92868 0.93217 0.93704 0.94380 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.42 36.01 0.38 -0.23 16 2 C -0.25 -3.15 6.60 -35.92 -0.24 -3.39 16 3 C 0.04 0.50 11.25 -19.19 -0.22 0.29 16 4 N -0.48 -8.36 10.54 -11.87 -0.13 -8.49 16 5 C 0.08 1.34 6.94 -13.46 -0.09 1.24 16 6 C 0.14 2.55 6.09 -4.98 -0.03 2.52 16 7 N -0.68 -13.95 5.46 -109.22 -0.60 -14.55 16 8 C 0.22 5.05 1.83 -68.86 -0.13 4.92 16 9 H 0.04 0.99 6.04 -51.93 -0.31 0.67 16 10 C -0.55 -14.41 8.47 -34.44 -0.29 -14.70 16 11 H 0.05 1.46 7.73 -52.48 -0.41 1.06 16 12 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 13 N -0.88 -24.08 11.30 55.43 0.63 -23.46 16 14 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.09 -2.09 4.18 -26.73 -0.11 -2.20 16 19 C -0.09 -1.80 2.85 -90.63 -0.26 -2.06 16 20 C -0.13 -2.48 8.97 37.16 0.33 -2.15 16 21 C -0.14 -2.42 9.19 37.16 0.34 -2.08 16 22 S 0.13 1.79 23.18 -107.50 -2.49 -0.71 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 27 H 0.08 1.47 7.93 -51.93 -0.41 1.06 16 28 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 29 H 0.33 7.17 8.45 -39.29 -0.33 6.83 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.09 2.38 6.01 -51.93 -0.31 2.07 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.31 7.52 -51.93 -0.39 0.92 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 1.04 6.54 -51.93 -0.34 0.70 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -27.39 331.38 -9.31 -36.70 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.29 Total: 5.59 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.41 Total: -16.06 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.09 Total: -46.50 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.39 -9.31 -36.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309342042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.774 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds