Wall clock time and date at job start Mon Mar 30 2020 07:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33640 * 126.03893 * 2 1 4 4 N 1.31779 * 114.49553 * 179.73179 * 3 2 1 5 5 C 1.29026 * 117.13158 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91995 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47422 * 89.97392 * 6 5 4 8 8 C 1.46898 * 111.00225 * 174.85806 * 7 6 5 9 9 H 1.08997 * 109.46863 * 325.88815 * 8 7 6 10 10 C 1.50696 * 109.47059 * 85.89228 * 8 7 6 11 11 H 1.08004 * 120.00238 * 359.97438 * 10 8 7 12 12 C 1.37881 * 120.00286 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99590 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00115 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47071 * 90.00112 * 14 12 10 16 16 H 1.48501 * 109.47080 * 209.99890 * 14 12 10 17 17 H 1.48498 * 109.47259 * 329.99621 * 14 12 10 18 18 C 1.53007 * 109.47024 * 205.88970 * 8 7 6 19 19 C 1.52995 * 109.47041 * 62.62165 * 18 8 7 20 20 C 1.52996 * 109.47557 * 65.80448 * 19 18 8 21 21 C 1.52995 * 109.47233 * 185.80847 * 19 18 8 22 22 S 1.70978 * 110.16288 * 359.97438 * 5 4 3 23 23 H 1.08997 * 109.46744 * 89.99484 * 1 2 3 24 24 H 1.08991 * 109.47628 * 209.99840 * 1 2 3 25 25 H 1.09003 * 109.47055 * 330.00285 * 1 2 3 26 26 H 1.07993 * 122.75006 * 359.73970 * 3 2 1 27 27 H 1.09005 * 109.46889 * 209.97461 * 6 5 4 28 28 H 1.08996 * 109.47035 * 329.97375 * 6 5 4 29 29 H 1.00900 * 111.00256 * 298.81719 * 7 6 5 30 30 H 0.96996 * 119.99805 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.46876 * 182.61765 * 18 8 7 32 32 H 1.08998 * 109.46797 * 302.61744 * 18 8 7 33 33 H 1.09002 * 109.46867 * 305.80675 * 19 18 8 34 34 H 1.08993 * 109.47656 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47406 * 300.00158 * 20 19 18 36 36 H 1.09002 * 109.46847 * 60.00215 * 20 19 18 37 37 H 1.09006 * 109.47402 * 59.99766 * 21 19 18 38 38 H 1.08996 * 109.47648 * 179.97438 * 21 19 18 39 39 H 1.09004 * 109.46947 * 300.00255 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5844 0.8169 0.0056 5 6 3.9311 -0.4259 0.0098 6 6 5.3531 -0.9247 0.0159 7 7 5.8107 -1.0829 1.4029 8 6 7.1506 -1.6831 1.4500 9 1 7.2600 -2.3924 0.6296 10 6 8.1908 -0.6005 1.3203 11 1 7.8870 0.4304 1.2131 12 6 9.5305 -0.9260 1.3374 13 7 9.9006 -2.1813 1.4674 14 14 10.8199 0.4159 1.1760 15 1 11.1802 0.9211 2.5251 16 1 12.0295 -0.1368 0.5151 17 1 10.2752 1.5301 0.3592 18 6 7.3364 -2.4119 2.7825 19 6 6.3223 -3.5529 2.8854 20 6 6.6312 -4.6074 1.8208 21 6 6.4097 -4.1892 4.2740 22 16 2.5435 -1.4248 0.0075 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 1.9026 2.0874 -0.0041 27 1 5.4030 -1.8863 -0.4950 28 1 5.9922 -0.2067 -0.4978 29 1 5.7921 -0.2009 1.8926 30 1 10.8430 -2.4104 1.4791 31 1 8.3465 -2.8176 2.8369 32 1 7.1810 -1.7124 3.6039 33 1 5.3174 -3.1611 2.7279 34 1 5.9091 -5.4205 1.8944 35 1 6.5689 -4.1541 0.8315 36 1 7.6361 -4.9992 1.9783 37 1 6.1896 -3.4379 5.0325 38 1 5.6870 -5.0018 4.3475 39 1 7.4147 -4.5809 4.4315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309342042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:50 Heat of formation + Delta-G solvation = 4.230764 kcal Electronic energy + Delta-G solvation = -18425.043228 eV Core-core repulsion = 15685.849968 eV Total energy + Delta-G solvation = -2739.193260 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62174 -38.55795 -35.79599 -34.62441 -33.32365 -30.70059 -28.02507 -27.82854 -26.90103 -25.81711 -23.96827 -22.44383 -20.32447 -20.10818 -19.10541 -18.51780 -16.80517 -16.48923 -16.03690 -15.64470 -15.43435 -15.05871 -14.74759 -14.73123 -14.23828 -13.86624 -13.68256 -13.43832 -13.35103 -13.08805 -12.93295 -12.82821 -12.76003 -12.39232 -12.17704 -11.99582 -11.98758 -11.84791 -11.32375 -11.07341 -10.83800 -10.51989 -10.38209 -10.10723 -9.67357 -9.13033 -8.04781 -6.24593 -0.21661 0.46606 0.88648 1.37089 1.39716 1.47939 1.90541 2.40893 3.15224 3.24072 3.86452 4.08827 4.15079 4.34059 4.36087 4.38513 4.43252 4.55494 4.75002 4.77915 4.94329 4.94890 4.97222 5.09053 5.10040 5.17563 5.25742 5.34192 5.36029 5.46007 5.51113 5.62206 5.77110 5.87055 6.15662 6.18119 6.36033 6.69542 6.87347 6.97914 7.45462 8.91703 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.005622 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.227854 B = 4979.270297 C = 6189.112154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.225 4.225 3 C 0.009 3.991 4 N -0.505 5.505 5 C 0.039 3.961 6 C 0.144 3.856 7 N -0.668 5.668 8 C 0.224 3.776 9 H 0.018 0.982 10 C -0.564 4.564 11 H 0.042 0.958 12 C 0.029 3.971 13 N -0.901 5.901 14 Si 0.943 3.057 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.278 1.278 18 C -0.083 4.083 19 C -0.088 4.088 20 C -0.127 4.127 21 C -0.137 4.137 22 S 0.159 5.841 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.191 0.809 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.328 0.672 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.952 -0.848 -1.484 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.347 4.347 3 C -0.141 4.141 4 N -0.221 5.221 5 C -0.238 4.238 6 C 0.012 3.988 7 N -0.298 5.298 8 C 0.116 3.884 9 H 0.035 0.965 10 C -0.603 4.603 11 H 0.060 0.940 12 C -0.172 4.172 13 N -0.540 5.540 14 Si 0.770 3.230 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.203 1.203 18 C -0.122 4.122 19 C -0.106 4.106 20 C -0.184 4.184 21 C -0.194 4.194 22 S 0.412 5.588 23 H 0.108 0.892 24 H 0.098 0.902 25 H 0.113 0.887 26 H 0.208 0.792 27 H 0.104 0.896 28 H 0.053 0.947 29 H 0.144 0.856 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.818 -2.268 -1.396 17.028 hybrid contribution 1.674 2.551 -0.433 3.082 sum -15.144 0.283 -1.829 15.257 Atomic orbital electron populations 1.20364 0.84044 1.04567 1.04076 1.26521 1.03212 0.94503 1.10425 1.22020 0.86353 1.01421 1.04333 1.66266 1.19526 1.19722 1.16559 1.26863 1.01421 0.91578 1.03921 1.20200 0.86456 0.99479 0.92704 1.60912 1.28298 1.29409 1.11180 1.19008 0.82487 0.92410 0.94536 0.96455 1.22139 0.93073 0.94017 1.51111 0.93964 1.25513 1.00080 0.97030 0.94609 1.69982 1.16572 1.17465 1.49965 0.85799 0.79190 0.79922 0.78123 1.20305 1.20678 1.20316 1.21405 0.99129 0.95390 0.96249 1.21021 0.99590 0.95285 0.94730 1.21655 1.00177 0.98131 0.98435 1.21772 1.00983 1.00211 0.96428 1.83716 0.97190 1.10973 1.66871 0.89162 0.90205 0.88690 0.79191 0.89577 0.94692 0.85593 0.92892 0.91722 0.96366 0.91362 0.92002 0.94496 0.94555 0.93397 0.91693 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.42 71.24 0.74 -0.21 16 2 C -0.22 -5.10 6.60 24.64 0.16 -4.93 16 3 C 0.01 0.24 11.25 83.66 0.94 1.18 16 4 N -0.51 -17.58 10.54 -191.46 -2.02 -19.60 16 5 C 0.04 1.34 6.94 88.52 0.61 1.96 16 6 C 0.14 5.63 6.09 85.56 0.52 6.15 16 7 N -0.67 -28.29 5.46 -499.48 -2.73 -31.01 16 8 C 0.22 10.89 1.83 44.17 0.08 10.97 16 9 H 0.02 0.93 6.04 -2.39 -0.01 0.92 16 10 C -0.56 -30.73 8.47 25.60 0.22 -30.51 16 11 H 0.04 2.35 7.73 -2.91 -0.02 2.33 16 12 C 0.03 1.56 5.30 84.66 0.45 2.01 16 13 N -0.90 -50.40 11.30 21.45 0.24 -50.16 16 14 Si 0.94 43.91 29.54 68.60 2.03 45.93 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C -0.08 -3.87 4.18 30.60 0.13 -3.74 16 19 C -0.09 -3.34 2.85 -10.80 -0.03 -3.37 16 20 C -0.13 -4.65 8.97 71.98 0.65 -4.00 16 21 C -0.14 -4.44 9.19 71.98 0.66 -3.78 16 22 S 0.16 4.20 23.18 -56.49 -1.31 2.89 16 23 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.19 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.09 3.20 7.93 -2.38 -0.02 3.19 16 28 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 29 H 0.33 14.60 8.45 -89.69 -0.76 13.84 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.06 3.40 6.01 -2.39 -0.01 3.39 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 2.60 7.52 -2.39 -0.02 2.58 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.45 6.54 -2.39 -0.02 1.43 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -60.32 331.38 1.62 -58.70 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.27 Total: 21.52 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 5.13 Total: -28.27 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -4.50 Total: -100.77 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.31 Total: 2.89 kcal Total: -60.32 1.62 -58.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309342042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.931 kcal (2) G-P(sol) polarization free energy of solvation -60.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds