Wall clock time and date at job start Mon Mar 30 2020 07:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.33636 * 126.03576 * 89.69334 * 3 2 1 5 5 N 1.31778 * 114.50132 * 179.79015 * 4 3 2 6 6 C 1.29027 * 117.12270 * 0.51716 * 5 4 3 7 7 C 1.50704 * 124.91678 * 179.67702 * 6 5 4 8 8 H 1.08998 * 109.47184 * 195.04056 * 7 6 5 9 9 C 1.53004 * 109.46872 * 75.04659 * 7 6 5 10 10 N 1.46897 * 109.47139 * 315.04598 * 7 6 5 11 11 C 1.46896 * 110.99877 * 204.99911 * 10 7 6 12 12 H 1.09001 * 109.47430 * 325.00156 * 11 10 7 13 13 C 1.53003 * 109.47338 * 84.99677 * 11 10 7 14 14 C 1.52999 * 109.47316 * 205.00123 * 11 10 7 15 15 C 1.50699 * 109.47350 * 64.99579 * 14 11 10 16 16 H 1.08005 * 119.99468 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00113 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99903 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47066 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47025 * 119.99994 * 19 17 15 22 22 H 1.48493 * 109.47066 * 239.99948 * 19 17 15 23 23 S 1.70974 * 110.16741 * 359.71940 * 6 5 4 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 1.08009 * 122.74864 * 359.97438 * 4 3 2 30 30 H 1.08998 * 109.46724 * 299.99679 * 9 7 6 31 31 H 1.08999 * 109.47231 * 59.99567 * 9 7 6 32 32 H 1.09000 * 109.46771 * 179.97438 * 9 7 6 33 33 H 1.00906 * 111.00081 * 328.94810 * 10 7 6 34 34 H 1.09001 * 109.46968 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.47508 * 300.00235 * 13 11 10 36 36 H 1.09005 * 109.46928 * 60.00060 * 13 11 10 37 37 H 1.09001 * 109.47187 * 184.99912 * 14 11 10 38 38 H 1.09003 * 109.47029 * 304.99891 * 14 11 10 39 39 H 0.96996 * 119.99372 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2889 2.1640 1.0806 5 7 2.7248 3.3794 0.8172 6 6 2.8404 3.7063 -0.4256 7 6 3.3136 5.0474 -0.9244 8 1 3.0671 5.1497 -1.9812 9 6 4.8290 5.1537 -0.7417 10 7 2.6524 6.1146 -0.1618 11 6 2.5954 7.3596 -0.9394 12 1 3.4953 7.4495 -1.5479 13 6 1.3652 7.3371 -1.8488 14 6 2.5032 8.5527 0.0139 15 6 3.7699 8.6468 0.8249 16 1 4.5617 7.9277 0.6750 17 6 3.9179 9.6508 1.7582 18 7 2.9535 10.5261 1.9411 19 14 5.4884 9.7678 2.7630 20 1 6.4107 8.6725 2.3692 21 1 6.1405 11.0780 2.5113 22 1 5.1625 9.6462 4.2066 23 16 2.3778 2.3983 -1.4247 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.1532 1.7974 2.0875 30 1 5.0755 5.0514 0.3151 31 1 5.3196 4.3617 -1.3075 32 1 5.1713 6.1235 -1.1028 33 1 1.7303 5.8302 0.1334 34 1 1.3227 8.2611 -2.4255 35 1 1.4308 6.4871 -2.5280 36 1 0.4652 7.2473 -1.2404 37 1 2.3717 9.4687 -0.5620 38 1 1.6529 8.4186 0.6826 39 1 3.0576 11.2321 2.5980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309615209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:10 Heat of formation + Delta-G solvation = 25.368255 kcal Electronic energy + Delta-G solvation = -18228.369179 eV Core-core repulsion = 15490.092510 eV Total energy + Delta-G solvation = -2738.276670 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78106 -37.17671 -34.59369 -33.10543 -31.78759 -28.57790 -27.93893 -27.14490 -25.56977 -23.26613 -22.92298 -21.70283 -19.70994 -18.77997 -17.97918 -16.22242 -15.60905 -15.05304 -14.91410 -14.51022 -14.33051 -14.07197 -13.68860 -13.46905 -12.78533 -12.71445 -12.50257 -11.95164 -11.83655 -11.82496 -11.68551 -11.63326 -11.35391 -11.07375 -11.03191 -10.88969 -10.53978 -10.36797 -9.98687 -9.40165 -9.24729 -9.21211 -8.90355 -8.72308 -8.18201 -7.56170 -5.80532 -3.77187 0.72083 1.32559 1.75692 2.93988 3.44186 3.51472 3.57075 4.21733 4.60722 4.63982 4.74638 4.77909 4.99431 5.09038 5.30657 5.41368 5.48983 5.55760 5.56917 5.62895 5.77086 5.80355 5.89335 5.89899 5.96825 6.08290 6.19477 6.30725 6.46493 6.63653 6.72259 7.05803 7.56699 7.73077 7.90362 8.06143 8.10667 8.22348 8.67520 9.28230 9.83866 11.31878 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.004430 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.467411 B = 6319.337953 C = 6665.235444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C -0.228 4.228 4 C 0.039 3.961 5 N -0.444 5.444 6 C 0.061 3.939 7 C 0.163 3.837 8 H 0.052 0.948 9 C -0.131 4.131 10 N -0.641 5.641 11 C 0.087 3.913 12 H 0.068 0.932 13 C -0.182 4.182 14 C 0.035 3.965 15 C -0.483 4.483 16 H 0.061 0.939 17 C 0.049 3.951 18 N -0.906 5.906 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.287 1.287 23 S 0.093 5.907 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.172 0.828 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.336 0.664 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -20.307 -7.970 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.350 4.350 4 C -0.113 4.113 5 N -0.157 5.157 6 C -0.218 4.218 7 C 0.050 3.950 8 H 0.070 0.930 9 C -0.190 4.190 10 N -0.273 5.273 11 C -0.023 4.023 12 H 0.086 0.914 13 C -0.241 4.241 14 C -0.003 4.003 15 C -0.522 4.522 16 H 0.079 0.921 17 C -0.150 4.150 18 N -0.547 5.547 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.214 1.214 23 S 0.349 5.651 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.189 0.811 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.686 -19.731 -8.203 21.536 hybrid contribution -0.055 -0.383 0.929 1.006 sum -2.742 -20.114 -7.274 21.564 Atomic orbital electron populations 1.21805 0.94301 1.01916 1.02605 1.19946 0.96067 0.89023 1.03190 1.25948 1.11522 1.02448 0.95038 1.21810 1.00705 0.88801 0.99945 1.66256 1.14521 1.16438 1.18438 1.27389 1.02343 1.01016 0.91080 1.20175 0.96557 0.83544 0.94745 0.92993 1.21786 0.92312 1.01564 1.03384 1.60663 1.25312 1.01306 1.40010 1.21931 0.95115 0.91309 0.93921 0.91416 1.22590 1.00484 1.00793 1.00218 1.19097 0.97812 0.89964 0.93403 1.21199 1.01561 1.10650 1.18783 0.92102 1.24996 0.96282 0.96207 0.97516 1.69978 1.32459 1.16738 1.35531 0.86591 0.84071 0.77430 0.80203 1.19807 1.21548 1.21381 1.83887 1.61442 1.07527 1.12282 0.92161 0.92022 0.92529 0.89877 0.90854 0.81132 0.90958 0.93580 0.91006 0.84546 0.92250 0.94551 0.93009 0.96395 0.96499 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.04 -0.34 6.47 -27.88 -0.18 -0.52 16 3 C -0.23 -2.57 5.85 -35.92 -0.21 -2.78 16 4 C 0.04 0.51 11.25 -19.19 -0.22 0.29 16 5 N -0.44 -7.29 10.50 -11.86 -0.12 -7.42 16 6 C 0.06 0.92 5.90 -13.45 -0.08 0.84 16 7 C 0.16 2.64 2.93 -68.86 -0.20 2.44 16 8 H 0.05 0.77 7.11 -51.93 -0.37 0.40 16 9 C -0.13 -2.12 9.38 37.16 0.35 -1.78 16 10 N -0.64 -12.40 5.74 -100.95 -0.58 -12.98 16 11 C 0.09 1.74 2.34 -67.71 -0.16 1.58 16 12 H 0.07 1.36 7.11 -51.93 -0.37 0.99 16 13 C -0.18 -3.05 9.15 37.16 0.34 -2.71 16 14 C 0.03 0.89 4.65 -27.88 -0.13 0.76 16 15 C -0.48 -13.75 8.84 -34.44 -0.30 -14.06 16 16 H 0.06 1.72 7.74 -52.48 -0.41 1.31 16 17 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 18 N -0.91 -27.91 13.29 55.43 0.74 -27.17 16 19 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 20 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 23 S 0.09 1.11 23.18 -107.50 -2.49 -1.38 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.17 1.88 8.06 -52.48 -0.42 1.45 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.21 7.43 -51.93 -0.39 0.82 16 33 H 0.34 6.47 8.09 -39.29 -0.32 6.15 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.53 7.43 -51.93 -0.39 0.14 16 36 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -31.59 336.50 -9.37 -40.97 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.44 Total: 0.62 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.52 Total: -15.30 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.03 Total: -47.57 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.59 -9.37 -40.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309615209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.334 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds