Wall clock time and date at job start Mon Mar 30 2020 07:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.33636 * 126.03576 * 89.69334 * 3 2 1 5 5 N 1.31778 * 114.50132 * 179.79015 * 4 3 2 6 6 C 1.29027 * 117.12270 * 0.51716 * 5 4 3 7 7 C 1.50704 * 124.91678 * 179.67702 * 6 5 4 8 8 H 1.08998 * 109.47184 * 195.04056 * 7 6 5 9 9 C 1.53004 * 109.46872 * 75.04659 * 7 6 5 10 10 N 1.46897 * 109.47139 * 315.04598 * 7 6 5 11 11 C 1.46896 * 110.99877 * 204.99911 * 10 7 6 12 12 H 1.09001 * 109.47430 * 325.00156 * 11 10 7 13 13 C 1.53003 * 109.47338 * 84.99677 * 11 10 7 14 14 C 1.52999 * 109.47316 * 205.00123 * 11 10 7 15 15 C 1.50699 * 109.47350 * 64.99579 * 14 11 10 16 16 H 1.08005 * 119.99468 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00113 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99903 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47066 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47025 * 119.99994 * 19 17 15 22 22 H 1.48493 * 109.47066 * 239.99948 * 19 17 15 23 23 S 1.70974 * 110.16741 * 359.71940 * 6 5 4 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 1.08009 * 122.74864 * 359.97438 * 4 3 2 30 30 H 1.08998 * 109.46724 * 299.99679 * 9 7 6 31 31 H 1.08999 * 109.47231 * 59.99567 * 9 7 6 32 32 H 1.09000 * 109.46771 * 179.97438 * 9 7 6 33 33 H 1.00906 * 111.00081 * 328.94810 * 10 7 6 34 34 H 1.09001 * 109.46968 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.47508 * 300.00235 * 13 11 10 36 36 H 1.09005 * 109.46928 * 60.00060 * 13 11 10 37 37 H 1.09001 * 109.47187 * 184.99912 * 14 11 10 38 38 H 1.09003 * 109.47029 * 304.99891 * 14 11 10 39 39 H 0.96996 * 119.99372 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2889 2.1640 1.0806 5 7 2.7248 3.3794 0.8172 6 6 2.8404 3.7063 -0.4256 7 6 3.3136 5.0474 -0.9244 8 1 3.0671 5.1497 -1.9812 9 6 4.8290 5.1537 -0.7417 10 7 2.6524 6.1146 -0.1618 11 6 2.5954 7.3596 -0.9394 12 1 3.4953 7.4495 -1.5479 13 6 1.3652 7.3371 -1.8488 14 6 2.5032 8.5527 0.0139 15 6 3.7699 8.6468 0.8249 16 1 4.5617 7.9277 0.6750 17 6 3.9179 9.6508 1.7582 18 7 2.9535 10.5261 1.9411 19 14 5.4884 9.7678 2.7630 20 1 6.4107 8.6725 2.3692 21 1 6.1405 11.0780 2.5113 22 1 5.1625 9.6462 4.2066 23 16 2.3778 2.3983 -1.4247 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.1532 1.7974 2.0875 30 1 5.0755 5.0514 0.3151 31 1 5.3196 4.3617 -1.3075 32 1 5.1713 6.1235 -1.1028 33 1 1.7303 5.8302 0.1334 34 1 1.3227 8.2611 -2.4255 35 1 1.4308 6.4871 -2.5280 36 1 0.4652 7.2473 -1.2404 37 1 2.3717 9.4687 -0.5620 38 1 1.6529 8.4186 0.6826 39 1 3.0576 11.2321 2.5980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309615209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:09 Heat of formation + Delta-G solvation = 5.257058 kcal Electronic energy + Delta-G solvation = -18229.241266 eV Core-core repulsion = 15490.092510 eV Total energy + Delta-G solvation = -2739.148756 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83484 -38.61898 -35.64317 -34.77162 -33.46777 -29.80386 -29.39231 -28.80519 -26.59559 -25.07348 -23.95016 -22.84054 -21.33258 -19.87674 -19.00699 -18.35585 -16.88990 -16.46806 -16.27521 -15.90907 -15.57106 -14.95436 -14.80918 -14.63766 -14.38538 -14.11019 -13.64245 -13.56560 -13.21474 -13.15642 -12.90167 -12.71754 -12.64244 -12.55798 -12.41608 -12.35883 -12.22150 -11.80507 -11.73804 -11.15786 -11.06006 -10.47759 -10.42454 -10.17606 -9.70801 -9.03350 -8.07079 -6.10400 -0.27081 0.36520 0.76716 1.40587 1.42523 1.55106 1.90978 2.49332 3.16157 3.24830 3.40460 3.87366 3.92751 4.13702 4.23242 4.28833 4.39373 4.40785 4.48212 4.56953 4.58903 4.76037 4.79236 4.93476 5.01774 5.03277 5.13916 5.22681 5.23132 5.26540 5.35584 5.41523 5.53841 5.70062 5.93237 6.33517 6.47082 6.64720 6.91595 7.03790 7.54760 9.05599 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.004430 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.467411 B = 6319.337953 C = 6665.235444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C -0.211 4.211 4 C 0.012 3.988 5 N -0.482 5.482 6 C 0.027 3.973 7 C 0.166 3.834 8 H 0.073 0.927 9 C -0.127 4.127 10 N -0.662 5.662 11 C 0.097 3.903 12 H 0.069 0.931 13 C -0.171 4.171 14 C 0.040 3.960 15 C -0.491 4.491 16 H 0.059 0.941 17 C -0.008 4.008 18 N -0.943 5.943 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.287 1.287 23 S 0.145 5.855 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.184 0.816 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.333 0.667 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.047 0.953 37 H -0.004 1.004 38 H -0.015 1.015 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -22.889 -9.128 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.332 4.332 4 C -0.139 4.139 5 N -0.196 5.196 6 C -0.251 4.251 7 C 0.053 3.947 8 H 0.090 0.910 9 C -0.186 4.186 10 N -0.294 5.294 11 C -0.012 4.012 12 H 0.087 0.913 13 C -0.230 4.230 14 C 0.002 3.998 15 C -0.530 4.530 16 H 0.077 0.923 17 C -0.203 4.203 18 N -0.585 5.585 19 Si 0.780 3.220 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.213 1.213 23 S 0.400 5.600 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.201 0.799 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.014 0.986 38 H 0.004 0.996 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.364 -22.319 -9.377 24.324 hybrid contribution -0.196 0.300 1.274 1.323 sum -2.561 -22.019 -8.104 23.602 Atomic orbital electron populations 1.21798 0.93651 1.03097 1.01912 1.20144 0.96451 0.86951 1.04781 1.26455 1.08925 1.03542 0.94296 1.22037 1.02122 0.88416 1.01296 1.66207 1.15303 1.18281 1.19772 1.27093 1.04442 1.01776 0.91781 1.20119 0.95850 0.83406 0.95301 0.90983 1.21732 0.93063 1.01951 1.01840 1.60450 1.25430 1.02142 1.41380 1.21584 0.96889 0.89782 0.92958 0.91252 1.22442 0.98411 1.02270 0.99888 1.18971 0.95491 0.91811 0.93515 1.21546 1.02366 1.10189 1.18871 0.92281 1.25840 0.99535 0.96068 0.98901 1.70105 1.34502 1.17503 1.36440 0.85557 0.80272 0.77819 0.78319 1.19035 1.20590 1.21305 1.83606 1.59949 1.05410 1.11014 0.92960 0.89958 0.93146 0.88217 0.89326 0.79873 0.93792 0.90742 0.92156 0.84836 0.91976 0.91518 0.93362 0.98621 0.99626 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 71.98 0.71 -1.01 16 2 C -0.04 -0.54 6.47 29.85 0.19 -0.35 16 3 C -0.21 -4.23 5.85 24.64 0.14 -4.09 16 4 C 0.01 0.29 11.25 83.66 0.94 1.23 16 5 N -0.48 -15.69 10.50 -191.44 -2.01 -17.70 16 6 C 0.03 0.78 5.90 88.52 0.52 1.31 16 7 C 0.17 5.22 2.93 44.17 0.13 5.35 16 8 H 0.07 1.96 7.11 -2.39 -0.02 1.94 16 9 C -0.13 -4.05 9.38 71.98 0.68 -3.37 16 10 N -0.66 -25.85 5.74 -473.31 -2.71 -28.56 16 11 C 0.10 3.95 2.34 44.92 0.11 4.05 16 12 H 0.07 2.77 7.11 -2.39 -0.02 2.75 16 13 C -0.17 -5.57 9.15 71.98 0.66 -4.92 16 14 C 0.04 2.11 4.65 29.85 0.14 2.25 16 15 C -0.49 -28.64 8.84 25.60 0.23 -28.42 16 16 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 17 C -0.01 -0.49 5.46 84.65 0.46 -0.02 16 18 N -0.94 -59.59 13.29 21.45 0.28 -59.30 16 19 Si 0.95 47.17 29.54 68.60 2.03 49.20 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 S 0.14 3.08 23.18 -56.49 -1.31 1.77 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.02 7.43 -2.39 -0.02 2.00 16 33 H 0.33 13.06 8.09 -89.69 -0.73 12.34 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.77 7.43 -2.39 -0.02 1.75 16 36 H 0.05 1.59 8.13 -2.38 -0.02 1.57 16 37 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -69.80 336.50 1.48 -68.32 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.30 Total: 14.25 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 4.91 Total: -27.98 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.44 Total: -105.57 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.31 Total: 1.77 kcal Total: -69.80 1.48 -68.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309615209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.576 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds