Wall clock time and date at job start Mon Mar 30 2020 07:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47008 * 2 1 4 4 C 1.33642 * 126.03361 * 90.04846 * 3 2 1 5 5 N 1.31788 * 114.49605 * 179.71792 * 4 3 2 6 6 C 1.29021 * 117.12550 * 0.46588 * 5 4 3 7 7 C 1.50703 * 124.91546 * 179.81523 * 6 5 4 8 8 H 1.09007 * 109.46733 * 164.69995 * 7 6 5 9 9 C 1.53001 * 109.47208 * 284.69853 * 7 6 5 10 10 N 1.46899 * 109.47332 * 44.69949 * 7 6 5 11 11 C 1.46902 * 111.00074 * 86.35112 * 10 7 6 12 12 H 1.09004 * 109.46856 * 324.04398 * 11 10 7 13 13 C 1.53001 * 109.46946 * 84.03846 * 11 10 7 14 14 C 1.52998 * 109.47461 * 204.04088 * 11 10 7 15 15 C 1.50705 * 109.47198 * 65.00036 * 14 11 10 16 16 H 1.08007 * 119.99924 * 359.97438 * 15 14 11 17 17 C 1.37868 * 120.00361 * 180.28001 * 15 14 11 18 18 N 1.31515 * 119.99814 * 359.72352 * 17 15 14 19 19 Si 1.86800 * 120.00494 * 179.72479 * 17 15 14 20 20 H 1.48499 * 109.46824 * 59.99367 * 19 17 15 21 21 H 1.48498 * 109.47454 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46825 * 300.00044 * 19 17 15 23 23 S 1.70981 * 110.16880 * 359.55246 * 6 5 4 24 24 H 1.09000 * 109.47107 * 59.99487 * 1 2 3 25 25 H 1.08999 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46699 * 300.00086 * 1 2 3 27 27 H 1.09004 * 109.46482 * 240.00367 * 2 1 3 28 28 H 1.09000 * 109.47107 * 120.00513 * 2 1 3 29 29 H 1.07997 * 122.75097 * 359.96005 * 4 3 2 30 30 H 1.08995 * 109.47243 * 175.23108 * 9 7 6 31 31 H 1.09003 * 109.46777 * 295.23117 * 9 7 6 32 32 H 1.08994 * 109.46915 * 55.22713 * 9 7 6 33 33 H 1.00893 * 111.00341 * 210.31220 * 10 7 6 34 34 H 1.09003 * 109.47071 * 184.76632 * 13 11 10 35 35 H 1.08993 * 109.47295 * 304.76620 * 13 11 10 36 36 H 1.09000 * 109.46955 * 64.76874 * 13 11 10 37 37 H 1.09003 * 109.46851 * 305.00377 * 14 11 10 38 38 H 1.08995 * 109.47193 * 185.00036 * 14 11 10 39 39 H 0.96998 * 120.00384 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2952 2.1617 1.0807 5 7 2.7310 3.3772 0.8171 6 6 2.8415 3.7059 -0.4256 7 6 3.3165 5.0463 -0.9243 8 1 3.5718 4.9710 -1.9814 9 6 2.2052 6.0819 -0.7407 10 7 4.5022 5.4602 -0.1624 11 6 5.7280 4.9098 -0.7560 12 1 5.5264 3.9123 -1.1466 13 6 6.1957 5.8184 -1.8947 14 6 6.8200 4.8280 0.3125 15 6 6.4117 3.8385 1.3733 16 1 5.4675 3.3202 1.2936 17 6 7.2405 3.5996 2.4489 18 7 8.3900 4.2311 2.5463 19 14 6.7310 2.3788 3.7678 20 1 6.5421 1.0391 3.1557 21 1 7.7886 2.3030 4.8074 22 1 5.4572 2.8235 4.3883 23 16 2.3779 2.3981 -1.4248 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1652 1.7931 2.0875 30 1 2.5766 7.0672 -1.0222 31 1 1.3562 5.8195 -1.3721 32 1 1.8910 6.0964 0.3029 33 1 4.5542 6.4654 -0.0921 34 1 7.0555 5.3671 -2.3899 35 1 5.3870 5.9446 -2.6144 36 1 6.4780 6.7908 -1.4911 37 1 6.9593 5.8096 0.7655 38 1 7.7539 4.5038 -0.1465 39 1 8.9733 4.0628 3.3028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309615210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:13 Heat of formation + Delta-G solvation = 27.325171 kcal Electronic energy + Delta-G solvation = -18699.028132 eV Core-core repulsion = 15960.836321 eV Total energy + Delta-G solvation = -2738.191811 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43857 -37.12871 -34.35703 -33.18905 -31.79192 -28.48970 -27.69797 -27.15521 -25.42361 -23.06478 -22.86130 -21.65742 -19.70731 -18.47188 -17.77743 -16.10567 -15.38994 -15.12022 -14.54479 -14.37465 -14.21776 -13.93602 -13.78158 -13.43207 -12.82893 -12.54169 -12.27111 -12.15410 -11.96893 -11.67793 -11.62159 -11.43723 -11.37609 -11.23532 -10.82657 -10.77624 -10.52078 -10.35574 -9.99326 -9.24743 -9.00770 -8.91289 -8.81176 -8.41018 -8.13970 -7.59456 -5.76718 -3.71991 1.07034 1.65333 2.07013 3.32797 3.47914 3.50648 3.56710 4.52175 4.67361 4.74321 4.87585 4.98182 5.19995 5.21268 5.32703 5.52669 5.54936 5.61010 5.68099 5.76315 5.77093 5.82239 5.88143 5.94111 6.04076 6.04542 6.10814 6.28117 6.44824 6.56734 6.64150 7.06099 7.56849 7.74758 8.03545 8.13661 8.26266 8.31975 8.72507 9.34818 9.88787 11.35861 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.007734 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.078826 B = 3619.729898 C = 5025.490113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C -0.228 4.228 4 C 0.043 3.957 5 N -0.426 5.426 6 C 0.083 3.917 7 C 0.160 3.840 8 H 0.054 0.946 9 C -0.145 4.145 10 N -0.643 5.643 11 C 0.089 3.911 12 H 0.060 0.940 13 C -0.181 4.181 14 C 0.035 3.965 15 C -0.479 4.479 16 H 0.064 0.936 17 C 0.049 3.951 18 N -0.909 5.909 19 Si 0.886 3.114 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.277 1.277 23 S 0.070 5.930 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.167 0.833 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.340 0.660 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 -2.780 -9.655 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.349 4.349 4 C -0.109 4.109 5 N -0.138 5.138 6 C -0.198 4.198 7 C 0.045 3.955 8 H 0.072 0.928 9 C -0.204 4.204 10 N -0.275 5.275 11 C -0.020 4.020 12 H 0.078 0.922 13 C -0.240 4.240 14 C -0.002 4.002 15 C -0.517 4.517 16 H 0.082 0.918 17 C -0.150 4.150 18 N -0.550 5.550 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.218 1.218 22 H -0.202 1.202 23 S 0.325 5.675 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.184 0.816 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.160 0.840 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.009 -3.015 -9.733 18.141 hybrid contribution -0.031 -0.519 0.960 1.091 sum -15.041 -3.533 -8.773 17.767 Atomic orbital electron populations 1.21788 0.94595 1.01661 1.02319 1.19927 0.95763 0.89348 1.03225 1.25804 1.12233 1.02068 0.94807 1.21793 1.00075 0.89258 0.99756 1.66145 1.12700 1.16568 1.18355 1.27121 1.02021 0.99868 0.90749 1.19950 0.92668 0.88230 0.94628 0.92780 1.21934 0.97447 0.97515 1.03538 1.60260 0.99958 1.15136 1.52167 1.21862 0.90823 0.95597 0.93736 0.92205 1.22582 1.00688 1.01202 0.99536 1.19090 0.91202 0.97572 0.92363 1.21185 1.03527 1.21716 1.05302 0.91825 1.24963 0.95237 0.96597 0.98162 1.69956 1.10747 1.43437 1.30887 0.86739 0.78024 0.81834 0.81880 1.20838 1.21847 1.20238 1.83681 1.62450 1.08451 1.12919 0.92666 0.92230 0.92339 0.90920 0.89933 0.81562 0.91782 0.92383 0.90841 0.84025 0.92476 0.94426 0.92749 0.96479 0.96612 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.90 37.16 0.37 -0.98 16 2 C -0.04 -0.47 6.47 -27.88 -0.18 -0.65 16 3 C -0.23 -3.35 5.85 -35.92 -0.21 -3.56 16 4 C 0.04 0.73 11.25 -19.18 -0.22 0.51 16 5 N -0.43 -8.35 10.50 -11.86 -0.12 -8.47 16 6 C 0.08 1.44 5.97 -13.46 -0.08 1.36 16 7 C 0.16 2.51 2.91 -68.86 -0.20 2.31 16 8 H 0.05 0.79 7.03 -51.92 -0.36 0.42 16 9 C -0.15 -1.85 9.20 37.16 0.34 -1.50 16 10 N -0.64 -12.14 5.73 -100.95 -0.58 -12.72 16 11 C 0.09 1.83 2.34 -67.71 -0.16 1.67 16 12 H 0.06 1.30 7.70 -51.93 -0.40 0.90 16 13 C -0.18 -3.00 9.16 37.16 0.34 -2.66 16 14 C 0.04 0.92 4.65 -27.88 -0.13 0.79 16 15 C -0.48 -13.98 8.84 -34.44 -0.30 -14.28 16 16 H 0.06 1.88 7.74 -52.48 -0.41 1.48 16 17 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 18 N -0.91 -28.39 13.29 55.43 0.74 -27.65 16 19 Si 0.89 23.29 29.54 -169.99 -5.02 18.27 16 20 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 22 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 23 S 0.07 1.02 23.18 -107.50 -2.49 -1.47 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 30 H 0.06 0.69 8.03 -51.93 -0.42 0.28 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.34 5.84 8.03 -39.30 -0.32 5.53 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.53 7.32 -51.93 -0.38 0.15 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -33.03 337.33 -9.41 -42.45 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.49 Total: 0.15 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -0.53 Total: -15.63 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.03 Total: -48.85 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.03 -9.41 -42.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309615210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.772 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds