Wall clock time and date at job start Mon Mar 30 2020 07:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47008 * 2 1 4 4 C 1.33642 * 126.03361 * 90.04846 * 3 2 1 5 5 N 1.31788 * 114.49605 * 179.71792 * 4 3 2 6 6 C 1.29021 * 117.12550 * 0.46588 * 5 4 3 7 7 C 1.50703 * 124.91546 * 179.81523 * 6 5 4 8 8 H 1.09007 * 109.46733 * 164.69995 * 7 6 5 9 9 C 1.53001 * 109.47208 * 284.69853 * 7 6 5 10 10 N 1.46899 * 109.47332 * 44.69949 * 7 6 5 11 11 C 1.46902 * 111.00074 * 86.35112 * 10 7 6 12 12 H 1.09004 * 109.46856 * 324.04398 * 11 10 7 13 13 C 1.53001 * 109.46946 * 84.03846 * 11 10 7 14 14 C 1.52998 * 109.47461 * 204.04088 * 11 10 7 15 15 C 1.50705 * 109.47198 * 65.00036 * 14 11 10 16 16 H 1.08007 * 119.99924 * 359.97438 * 15 14 11 17 17 C 1.37868 * 120.00361 * 180.28001 * 15 14 11 18 18 N 1.31515 * 119.99814 * 359.72352 * 17 15 14 19 19 Si 1.86800 * 120.00494 * 179.72479 * 17 15 14 20 20 H 1.48499 * 109.46824 * 59.99367 * 19 17 15 21 21 H 1.48498 * 109.47454 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46825 * 300.00044 * 19 17 15 23 23 S 1.70981 * 110.16880 * 359.55246 * 6 5 4 24 24 H 1.09000 * 109.47107 * 59.99487 * 1 2 3 25 25 H 1.08999 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46699 * 300.00086 * 1 2 3 27 27 H 1.09004 * 109.46482 * 240.00367 * 2 1 3 28 28 H 1.09000 * 109.47107 * 120.00513 * 2 1 3 29 29 H 1.07997 * 122.75097 * 359.96005 * 4 3 2 30 30 H 1.08995 * 109.47243 * 175.23108 * 9 7 6 31 31 H 1.09003 * 109.46777 * 295.23117 * 9 7 6 32 32 H 1.08994 * 109.46915 * 55.22713 * 9 7 6 33 33 H 1.00893 * 111.00341 * 210.31220 * 10 7 6 34 34 H 1.09003 * 109.47071 * 184.76632 * 13 11 10 35 35 H 1.08993 * 109.47295 * 304.76620 * 13 11 10 36 36 H 1.09000 * 109.46955 * 64.76874 * 13 11 10 37 37 H 1.09003 * 109.46851 * 305.00377 * 14 11 10 38 38 H 1.08995 * 109.47193 * 185.00036 * 14 11 10 39 39 H 0.96998 * 120.00384 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2952 2.1617 1.0807 5 7 2.7310 3.3772 0.8171 6 6 2.8415 3.7059 -0.4256 7 6 3.3165 5.0463 -0.9243 8 1 3.5718 4.9710 -1.9814 9 6 2.2052 6.0819 -0.7407 10 7 4.5022 5.4602 -0.1624 11 6 5.7280 4.9098 -0.7560 12 1 5.5264 3.9123 -1.1466 13 6 6.1957 5.8184 -1.8947 14 6 6.8200 4.8280 0.3125 15 6 6.4117 3.8385 1.3733 16 1 5.4675 3.3202 1.2936 17 6 7.2405 3.5996 2.4489 18 7 8.3900 4.2311 2.5463 19 14 6.7310 2.3788 3.7678 20 1 6.5421 1.0391 3.1557 21 1 7.7886 2.3030 4.8074 22 1 5.4572 2.8235 4.3883 23 16 2.3779 2.3981 -1.4248 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1652 1.7931 2.0875 30 1 2.5766 7.0672 -1.0222 31 1 1.3562 5.8195 -1.3721 32 1 1.8910 6.0964 0.3029 33 1 4.5542 6.4654 -0.0921 34 1 7.0555 5.3671 -2.3899 35 1 5.3870 5.9446 -2.6144 36 1 6.4780 6.7908 -1.4911 37 1 6.9593 5.8096 0.7655 38 1 7.7539 4.5038 -0.1465 39 1 8.9733 4.0628 3.3028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309615210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:12 Heat of formation + Delta-G solvation = 5.887147 kcal Electronic energy + Delta-G solvation = -18699.957755 eV Core-core repulsion = 15960.836321 eV Total energy + Delta-G solvation = -2739.121434 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69172 -38.57158 -35.61344 -34.81691 -33.53867 -29.82294 -29.20042 -28.73998 -26.54511 -25.04659 -23.96000 -22.81735 -21.41389 -19.70639 -18.97145 -18.33924 -16.68878 -16.51083 -16.39256 -15.79840 -15.37975 -15.18669 -14.83237 -14.65093 -14.37888 -14.01174 -13.82400 -13.40265 -13.21816 -13.21035 -12.92554 -12.70379 -12.60715 -12.50558 -12.41530 -12.32847 -12.22245 -11.85626 -11.73761 -11.14841 -11.08862 -10.47065 -10.28552 -10.04966 -9.59729 -9.02936 -8.08103 -6.09372 -0.13305 0.49143 0.85106 1.34291 1.38458 1.46231 2.05619 2.46687 3.23259 3.35131 3.44778 3.90878 4.03382 4.13347 4.17036 4.29062 4.37204 4.40317 4.48664 4.57483 4.63314 4.76915 4.82252 4.92974 4.99526 5.02253 5.14843 5.22825 5.25589 5.29136 5.33113 5.37593 5.53910 5.70281 5.93294 6.33123 6.49819 6.75795 7.04980 7.09008 7.54945 9.04169 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.007734 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.078826 B = 3619.729898 C = 5025.490113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.217 4.217 4 C 0.007 3.993 5 N -0.470 5.470 6 C 0.054 3.946 7 C 0.159 3.841 8 H 0.073 0.927 9 C -0.137 4.137 10 N -0.665 5.665 11 C 0.103 3.897 12 H 0.046 0.954 13 C -0.170 4.170 14 C 0.039 3.961 15 C -0.484 4.484 16 H 0.057 0.943 17 C -0.006 4.006 18 N -0.941 5.941 19 Si 0.947 3.053 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.277 1.277 23 S 0.115 5.885 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.170 0.830 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.347 0.653 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.056 0.944 37 H -0.008 1.008 38 H -0.010 1.010 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.931 -3.627 -11.058 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.338 4.338 4 C -0.143 4.143 5 N -0.183 5.183 6 C -0.225 4.225 7 C 0.045 3.955 8 H 0.090 0.910 9 C -0.195 4.195 10 N -0.299 5.299 11 C -0.006 4.006 12 H 0.064 0.936 13 C -0.229 4.229 14 C 0.002 3.998 15 C -0.523 4.523 16 H 0.075 0.925 17 C -0.201 4.201 18 N -0.585 5.585 19 Si 0.774 3.226 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.203 1.203 23 S 0.370 5.630 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.187 0.813 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.168 0.832 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.011 0.989 38 H 0.008 0.992 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.751 -3.859 -11.148 20.489 hybrid contribution 0.470 -0.302 1.363 1.473 sum -16.282 -4.161 -9.786 19.447 Atomic orbital electron populations 1.21750 0.92895 1.03067 1.02089 1.20122 0.97132 0.87152 1.04135 1.26299 1.09940 1.03265 0.94331 1.21950 1.02114 0.89472 1.00810 1.66103 1.14034 1.18090 1.20074 1.27407 1.02784 1.01337 0.91005 1.20124 0.91991 0.88502 0.94854 0.90964 1.21883 0.97183 0.97750 1.02727 1.60019 1.00384 1.15698 1.53761 1.21443 0.90026 0.96210 0.92963 0.93590 1.22428 1.01740 1.00141 0.98563 1.18975 0.92331 0.95210 0.93301 1.21494 1.02955 1.21846 1.06010 0.92493 1.25748 0.95382 0.98520 1.00479 1.70075 1.11758 1.44967 1.31662 0.85774 0.77576 0.79900 0.79391 1.19936 1.21087 1.20281 1.83404 1.61258 1.06731 1.11621 0.92631 0.90022 0.92853 0.89708 0.89292 0.81285 0.89670 0.90250 0.92924 0.83205 0.92552 0.91067 0.92475 0.98938 0.99153 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.90 71.98 0.71 -1.52 16 2 C -0.05 -0.91 6.47 29.85 0.19 -0.72 16 3 C -0.22 -6.07 5.85 24.64 0.14 -5.93 16 4 C 0.01 0.24 11.25 83.66 0.94 1.18 16 5 N -0.47 -18.51 10.50 -191.44 -2.01 -20.52 16 6 C 0.05 1.84 5.97 88.52 0.53 2.37 16 7 C 0.16 4.77 2.91 44.17 0.13 4.89 16 8 H 0.07 1.89 7.03 -2.38 -0.02 1.87 16 9 C -0.14 -3.20 9.20 71.98 0.66 -2.54 16 10 N -0.67 -24.83 5.73 -473.29 -2.71 -27.54 16 11 C 0.10 4.21 2.34 44.91 0.11 4.32 16 12 H 0.05 1.99 7.70 -2.38 -0.02 1.97 16 13 C -0.17 -5.34 9.16 71.98 0.66 -4.68 16 14 C 0.04 2.11 4.65 29.85 0.14 2.25 16 15 C -0.48 -28.90 8.84 25.60 0.23 -28.68 16 16 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 17 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 18 N -0.94 -60.08 13.29 21.44 0.28 -59.79 16 19 Si 0.95 48.57 29.54 68.60 2.03 50.60 16 20 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 22 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 23 S 0.11 3.13 23.18 -56.49 -1.31 1.82 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.17 5.35 8.06 -2.91 -0.02 5.32 16 30 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.35 11.70 8.03 -89.70 -0.72 10.98 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.77 7.32 -2.39 -0.02 1.76 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -72.71 337.33 1.48 -71.23 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.30 Total: 13.17 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 4.90 Total: -28.97 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -4.44 Total: -107.85 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.31 Total: 1.82 kcal Total: -72.71 1.48 -71.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309615210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.115 kcal (2) G-P(sol) polarization free energy of solvation -72.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds