Wall clock time and date at job start Mon Mar 30 2020 07:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47232 * 2 1 4 4 C 1.33636 * 126.03887 * 90.04068 * 3 2 1 5 5 N 1.31785 * 114.50065 * 179.71779 * 4 3 2 6 6 C 1.29029 * 117.12571 * 0.47808 * 5 4 3 7 7 C 1.50693 * 124.91804 * 179.80931 * 6 5 4 8 8 H 1.08997 * 109.47233 * 194.69781 * 7 6 5 9 9 C 1.53000 * 109.46880 * 74.69444 * 7 6 5 10 10 N 1.46902 * 109.47126 * 314.69494 * 7 6 5 11 11 C 1.46890 * 111.00272 * 273.93335 * 10 7 6 12 12 H 1.09001 * 109.47547 * 36.01849 * 11 10 7 13 13 C 1.53007 * 109.47346 * 276.02255 * 11 10 7 14 14 C 1.53003 * 109.47410 * 156.02068 * 11 10 7 15 15 C 1.50701 * 109.46813 * 295.00005 * 14 11 10 16 16 H 1.07991 * 119.99966 * 359.97438 * 15 14 11 17 17 C 1.37876 * 119.99729 * 180.02562 * 15 14 11 18 18 N 1.31518 * 120.00131 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46882 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47077 * 119.99853 * 19 17 15 22 22 H 1.48503 * 109.46873 * 239.99649 * 19 17 15 23 23 S 1.70977 * 110.16272 * 359.54402 * 6 5 4 24 24 H 1.08994 * 109.47164 * 60.00092 * 1 2 3 25 25 H 1.08999 * 109.47038 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46985 * 300.00020 * 1 2 3 27 27 H 1.09004 * 109.46916 * 240.00423 * 2 1 3 28 28 H 1.09000 * 109.47777 * 120.00209 * 2 1 3 29 29 H 1.07997 * 122.74792 * 359.97213 * 4 3 2 30 30 H 1.08994 * 109.47271 * 304.85350 * 9 7 6 31 31 H 1.09003 * 109.47063 * 64.86045 * 9 7 6 32 32 H 1.09003 * 109.47115 * 184.85549 * 9 7 6 33 33 H 1.00901 * 111.00022 * 37.88674 * 10 7 6 34 34 H 1.09006 * 109.46838 * 295.28279 * 13 11 10 35 35 H 1.08999 * 109.46775 * 55.27236 * 13 11 10 36 36 H 1.08990 * 109.47349 * 175.27911 * 13 11 10 37 37 H 1.08997 * 109.46870 * 54.99971 * 14 11 10 38 38 H 1.09003 * 109.47168 * 175.00088 * 14 11 10 39 39 H 0.97002 * 120.00253 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2952 2.1618 1.0806 5 7 2.7310 3.3773 0.8170 6 6 2.8414 3.7060 -0.4258 7 6 3.3163 5.0463 -0.9246 8 1 3.0703 5.1487 -1.9815 9 6 4.8317 5.1510 -0.7412 10 7 2.6558 6.1145 -0.1625 11 6 1.3539 6.4541 -0.7518 12 1 0.8828 5.5500 -1.1377 13 6 1.5558 7.4513 -1.8945 14 6 0.4571 7.0795 0.3184 15 6 0.1578 6.0564 1.3836 16 1 0.5660 5.0597 1.3049 17 6 -0.6381 6.3925 2.4581 18 7 -1.1357 7.6062 2.5537 19 14 -1.0085 5.1245 3.7789 20 1 -0.3342 3.8456 3.4402 21 1 -0.5111 5.6150 5.0894 22 1 -2.4751 4.9050 3.8569 23 16 2.3779 2.3982 -1.4248 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.1652 1.7933 2.0874 30 1 5.0852 4.9631 0.3021 31 1 5.3260 4.4138 -1.3738 32 1 5.1634 6.1509 -1.0212 33 1 2.5574 5.8582 0.8085 34 1 1.9493 8.3863 -1.4955 35 1 2.2611 7.0390 -2.6162 36 1 0.6012 7.6391 -2.3858 37 1 0.9669 7.9323 0.7667 38 1 -0.4752 7.4123 -0.1379 39 1 -1.6953 7.8428 3.3099 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309615211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:16 Heat of formation + Delta-G solvation = -0.280662 kcal Electronic energy + Delta-G solvation = -18819.988485 eV Core-core repulsion = 16080.599595 eV Total energy + Delta-G solvation = -2739.388890 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87045 -38.50355 -35.69550 -34.82115 -33.56632 -29.65840 -29.25629 -29.18455 -26.51329 -25.12005 -24.00972 -22.76154 -21.27937 -19.72888 -19.11766 -18.50375 -17.03973 -16.49948 -16.45924 -15.89998 -15.44460 -15.08966 -14.92314 -14.57489 -14.47851 -14.05580 -13.64782 -13.48207 -13.34599 -13.08361 -12.82656 -12.67746 -12.67386 -12.54986 -12.43476 -12.30712 -12.21959 -12.01479 -11.78604 -11.25505 -11.02461 -10.61195 -10.55392 -10.15382 -9.70320 -9.29492 -8.20517 -6.27932 -0.23466 0.42578 0.78140 1.31149 1.33166 1.45689 1.91477 2.37546 3.05580 3.17228 3.55275 3.85951 3.94005 4.09547 4.27320 4.30033 4.34943 4.43408 4.54837 4.60210 4.67871 4.74840 4.87657 4.95468 5.01136 5.03572 5.09451 5.20439 5.21612 5.29905 5.33559 5.37272 5.50942 5.56808 5.83700 6.21836 6.34561 6.55861 6.87225 6.87969 7.39895 8.91485 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.008493 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.271086 B = 3295.896278 C = 4729.028387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C -0.217 4.217 4 C 0.012 3.988 5 N -0.490 5.490 6 C 0.012 3.988 7 C 0.156 3.844 8 H 0.102 0.898 9 C -0.122 4.122 10 N -0.663 5.663 11 C 0.094 3.906 12 H 0.017 0.983 13 C -0.128 4.128 14 C 0.027 3.973 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.951 3.049 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.280 1.280 23 S 0.131 5.869 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.174 0.826 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.352 0.648 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.053 0.947 37 H -0.002 1.002 38 H -0.004 1.004 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 -14.623 -9.627 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 C -0.338 4.338 4 C -0.138 4.138 5 N -0.204 5.204 6 C -0.268 4.268 7 C 0.042 3.958 8 H 0.120 0.880 9 C -0.181 4.181 10 N -0.296 5.296 11 C -0.015 4.015 12 H 0.035 0.965 13 C -0.186 4.186 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.777 3.223 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.206 1.206 23 S 0.386 5.614 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.191 0.809 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.173 0.827 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.942 -13.735 -10.514 19.472 hybrid contribution -1.335 -1.140 2.360 2.941 sum 7.607 -14.875 -8.154 18.591 Atomic orbital electron populations 1.21808 0.94271 1.03090 1.01483 1.20116 0.95949 0.87094 1.04866 1.26364 1.09377 1.03689 0.94418 1.21861 1.02265 0.88775 1.00939 1.66029 1.16611 1.17927 1.19848 1.28438 1.03472 1.03044 0.91826 1.20628 0.96584 0.80621 0.97937 0.87978 1.21693 0.91110 1.03369 1.01971 1.60924 1.22197 1.38759 1.07707 1.21473 0.88599 0.96276 0.95197 0.96504 1.21741 1.01109 0.98919 0.96827 1.19136 0.93382 0.95372 0.93108 1.21552 1.29475 0.98181 1.06748 0.92552 1.25779 0.96072 0.96975 1.00356 1.70091 1.35123 1.20359 1.31538 0.85599 0.77707 0.79709 0.79297 1.19238 1.20537 1.20557 1.83476 1.60523 1.05889 1.11478 0.93346 0.89438 0.93992 0.88821 0.88254 0.80932 0.93599 0.90475 0.90080 0.82660 0.92963 0.91272 0.92750 0.98357 0.98588 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.89 71.98 0.71 -2.20 16 2 C -0.04 -0.76 6.47 29.85 0.19 -0.57 16 3 C -0.22 -5.83 5.85 24.64 0.14 -5.69 16 4 C 0.01 0.38 11.25 83.66 0.94 1.32 16 5 N -0.49 -18.42 9.90 -191.45 -1.90 -20.31 16 6 C 0.01 0.39 5.92 88.52 0.52 0.92 16 7 C 0.16 4.91 2.89 44.17 0.13 5.03 16 8 H 0.10 2.83 7.02 -2.39 -0.02 2.82 16 9 C -0.12 -3.17 9.50 71.98 0.68 -2.48 16 10 N -0.66 -26.20 6.05 -473.32 -2.86 -29.07 16 11 C 0.09 4.00 2.41 44.92 0.11 4.11 16 12 H 0.02 0.74 7.69 -2.39 -0.02 0.73 16 13 C -0.13 -4.42 9.41 71.98 0.68 -3.74 16 14 C 0.03 1.47 4.58 29.85 0.14 1.61 16 15 C -0.52 -30.15 8.12 25.60 0.21 -29.94 16 16 H 0.06 3.24 7.47 -2.92 -0.02 3.22 16 17 C 0.01 0.35 5.46 84.65 0.46 0.81 16 18 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 19 Si 0.95 46.49 29.54 68.60 2.03 48.52 16 20 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 S 0.13 3.50 23.18 -56.49 -1.31 2.19 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.17 5.17 8.06 -2.91 -0.02 5.15 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.35 16.28 6.45 -89.69 -0.58 15.71 16 34 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.07 1.95 7.31 -2.39 -0.02 1.93 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -67.74 335.04 1.60 -66.14 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.44 Total: 20.87 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 4.92 Total: -30.82 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.48 Total: -106.91 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.31 Total: 2.19 kcal Total: -67.74 1.60 -66.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309615211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.862 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds