Wall clock time and date at job start Mon Mar 30 2020 07:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.50699 * 109.47212 * 2 1 4 4 C 1.33332 * 125.95188 * 89.99502 * 3 2 1 5 5 N 1.32124 * 114.57899 * 180.02562 * 4 3 2 6 6 C 1.29685 * 116.86386 * 0.02562 * 5 4 3 7 7 N 1.38620 * 124.94853 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99673 * 0.30417 * 7 6 5 9 9 C 1.52996 * 109.47059 * 179.72391 * 8 7 6 10 10 C 1.53010 * 109.47146 * 299.99645 * 9 8 7 11 11 C 1.53000 * 109.47166 * 59.99736 * 9 8 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 9 8 7 13 13 C 1.50700 * 109.47008 * 179.97438 * 12 9 8 14 14 H 1.07997 * 120.00362 * 0.02562 * 13 12 9 15 15 C 1.37876 * 119.99653 * 179.97438 * 13 12 9 16 16 N 1.31516 * 120.00420 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47037 * 60.00067 * 17 15 13 19 19 H 1.48495 * 109.46817 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46854 * 299.99817 * 17 15 13 21 21 S 1.70968 * 110.10419 * 0.24267 * 6 5 4 22 22 H 1.09003 * 109.47485 * 299.99813 * 1 2 3 23 23 H 1.09002 * 109.47651 * 60.00055 * 1 2 3 24 24 H 1.09007 * 109.47485 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47588 * 239.99823 * 2 1 3 26 26 H 1.08997 * 109.47214 * 119.99778 * 2 1 3 27 27 H 1.07996 * 122.71223 * 0.03203 * 4 3 2 28 28 H 0.97001 * 119.99882 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.46963 * 299.72186 * 8 7 6 30 30 H 1.08994 * 109.47567 * 59.72339 * 8 7 6 31 31 H 1.09003 * 109.46863 * 59.99870 * 10 9 8 32 32 H 1.09001 * 109.47172 * 179.97438 * 10 9 8 33 33 H 1.09000 * 109.46753 * 300.00454 * 10 9 8 34 34 H 1.08990 * 109.47258 * 60.00092 * 11 9 8 35 35 H 1.09001 * 109.46739 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47407 * 299.99599 * 11 9 8 37 37 H 1.08990 * 109.47021 * 299.99845 * 12 9 8 38 38 H 1.09002 * 109.46620 * 60.00037 * 12 9 8 39 39 H 0.97000 * 120.00497 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2931 2.1588 1.0793 5 7 2.7244 3.3802 0.8188 6 6 2.8390 3.7071 -0.4309 7 7 3.2737 4.9397 -0.8927 8 6 3.6508 5.9871 0.0596 9 6 4.0965 7.2352 -0.7050 10 6 5.2985 6.8909 -1.5869 11 6 2.9464 7.7336 -1.5824 12 6 4.4898 8.3293 0.2895 13 6 4.9293 9.5583 -0.4637 14 1 4.9279 9.5592 -1.5437 15 6 5.3323 10.6821 0.2260 16 7 5.3336 10.6814 1.5412 17 14 5.8765 12.2059 -0.7076 18 1 4.7606 12.6890 -1.5599 19 1 6.2571 13.2682 0.2577 20 1 7.0439 11.8719 -1.5627 21 16 2.3690 2.3987 -1.4261 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 2.1625 1.7883 2.0853 28 1 3.3319 5.1074 -1.8463 29 1 2.7945 6.2324 0.6879 30 1 4.4701 5.6321 0.6846 31 1 5.0179 6.1115 -2.2954 32 1 5.6157 7.7799 -2.1320 33 1 6.1178 6.5357 -0.9618 34 1 2.0901 7.9788 -0.9542 35 1 3.2641 8.6224 -2.1274 36 1 2.6658 6.9543 -2.2910 37 1 3.6333 8.5745 0.9174 38 1 5.3090 7.9744 0.9148 39 1 5.6167 11.4721 2.0264 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309663857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:19 Heat of formation + Delta-G solvation = 18.639430 kcal Electronic energy + Delta-G solvation = -17983.087604 eV Core-core repulsion = 15244.519151 eV Total energy + Delta-G solvation = -2738.568453 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.57003 -37.72925 -34.91407 -33.44924 -32.13573 -28.29518 -27.07130 -26.53643 -26.38104 -24.35399 -23.05027 -22.22930 -19.30346 -19.03002 -17.56888 -16.35616 -16.24570 -15.10580 -14.82837 -14.64530 -14.31960 -14.12129 -13.90023 -13.43998 -13.09498 -12.81143 -12.66498 -12.20518 -12.07214 -11.71112 -11.67201 -11.25148 -11.02445 -10.89605 -10.87947 -10.65984 -10.42623 -10.28131 -10.05064 -9.69244 -9.42973 -9.16416 -9.07554 -8.95533 -8.36907 -7.46198 -6.01056 -4.02573 1.13947 1.22676 1.87642 3.15583 3.31303 3.36741 3.37678 3.46614 4.43951 4.76755 4.90400 4.91380 5.16524 5.34314 5.45250 5.48719 5.60313 5.60349 5.68290 5.73015 5.94905 6.00475 6.14702 6.14987 6.19538 6.29403 6.37511 6.60750 6.63329 6.97686 7.05108 7.05406 7.19428 7.33679 7.62171 7.74393 7.97307 8.21345 8.39039 9.01880 9.60589 11.10350 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.052285 B = 0.003407 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.394579 B = 8215.713564 C = 8460.663170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.032 4.032 3 C -0.276 4.276 4 C 0.091 3.909 5 N -0.554 5.554 6 C 0.332 3.668 7 N -0.683 5.683 8 C 0.143 3.857 9 C -0.073 4.073 10 C -0.127 4.127 11 C -0.127 4.127 12 C 0.038 3.962 13 C -0.513 4.513 14 H 0.059 0.941 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 S 0.059 5.941 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.168 0.832 28 H 0.411 0.589 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 -18.714 -5.520 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 C -0.399 4.399 4 C -0.059 4.059 5 N -0.280 5.280 6 C -0.040 4.040 7 N -0.322 5.322 8 C 0.019 3.981 9 C -0.074 4.074 10 C -0.184 4.184 11 C -0.184 4.184 12 C 0.000 4.000 13 C -0.551 4.551 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 S 0.308 5.692 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.185 0.815 28 H 0.250 0.750 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.964 -18.187 -5.904 20.349 hybrid contribution 0.282 0.779 0.136 0.840 sum -6.681 -17.407 -5.768 19.517 Atomic orbital electron populations 1.21812 0.94984 1.01423 1.02363 1.19768 0.95519 0.89349 1.02593 1.25128 1.18766 1.02568 0.93424 1.21300 0.97498 0.87705 0.99447 1.66467 1.26691 1.18723 1.16106 1.23675 0.96589 0.92238 0.91508 1.44477 1.69423 1.08676 1.09644 1.21687 0.99770 0.85830 0.90858 1.20941 0.94983 0.94193 0.97253 1.21765 0.97664 1.00343 0.98663 1.21762 0.97737 1.00250 0.98685 1.19072 0.96691 0.91153 0.93034 1.21140 1.43677 0.97362 0.92901 0.92314 1.25008 0.95918 0.98717 0.94786 1.69950 1.47988 1.29430 1.06014 0.86709 0.79089 0.82898 0.79601 1.20322 1.21372 1.20314 1.83802 1.66988 1.06810 1.11600 0.92421 0.92693 0.92479 0.91382 0.90355 0.81504 0.75048 0.91803 0.91803 0.95381 0.91352 0.93281 0.93282 0.91357 0.95381 0.96307 0.96311 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.15 0.37 -0.78 16 2 C -0.03 -0.27 6.46 -27.89 -0.18 -0.45 16 3 C -0.28 -3.22 5.83 -36.02 -0.21 -3.43 16 4 C 0.09 1.21 11.24 -19.14 -0.22 1.00 16 5 N -0.55 -9.03 10.14 -15.20 -0.15 -9.18 16 6 C 0.33 5.04 8.09 -87.67 -0.71 4.33 16 7 N -0.68 -10.29 5.12 -62.30 -0.32 -10.61 16 8 C 0.14 2.53 4.84 -4.04 -0.02 2.51 16 9 C -0.07 -1.38 0.54 -154.50 -0.08 -1.47 16 10 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 11 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 12 C 0.04 0.93 4.04 -27.88 -0.11 0.82 16 13 C -0.51 -13.57 7.65 -34.44 -0.26 -13.83 16 14 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 S 0.06 0.72 23.21 -107.50 -2.50 -1.77 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.41 5.48 6.29 -40.82 -0.26 5.22 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 32 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 36 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -29.40 327.61 -9.40 -38.81 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.16 Total: 1.02 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.93 Total: -13.72 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.26 Total: -45.42 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.50 Total: -1.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.40 -9.40 -38.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309663857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.446 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds