Wall clock time and date at job start Mon Mar 30 2020 07:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.50699 * 109.47212 * 2 1 4 4 C 1.33332 * 125.95188 * 89.99502 * 3 2 1 5 5 N 1.32124 * 114.57899 * 180.02562 * 4 3 2 6 6 C 1.29685 * 116.86386 * 0.02562 * 5 4 3 7 7 N 1.38620 * 124.94853 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99673 * 0.30417 * 7 6 5 9 9 C 1.52996 * 109.47059 * 179.72391 * 8 7 6 10 10 C 1.53010 * 109.47146 * 299.99645 * 9 8 7 11 11 C 1.53000 * 109.47166 * 59.99736 * 9 8 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 9 8 7 13 13 C 1.50700 * 109.47008 * 179.97438 * 12 9 8 14 14 H 1.07997 * 120.00362 * 0.02562 * 13 12 9 15 15 C 1.37876 * 119.99653 * 179.97438 * 13 12 9 16 16 N 1.31516 * 120.00420 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47037 * 60.00067 * 17 15 13 19 19 H 1.48495 * 109.46817 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46854 * 299.99817 * 17 15 13 21 21 S 1.70968 * 110.10419 * 0.24267 * 6 5 4 22 22 H 1.09003 * 109.47485 * 299.99813 * 1 2 3 23 23 H 1.09002 * 109.47651 * 60.00055 * 1 2 3 24 24 H 1.09007 * 109.47485 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47588 * 239.99823 * 2 1 3 26 26 H 1.08997 * 109.47214 * 119.99778 * 2 1 3 27 27 H 1.07996 * 122.71223 * 0.03203 * 4 3 2 28 28 H 0.97001 * 119.99882 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.46963 * 299.72186 * 8 7 6 30 30 H 1.08994 * 109.47567 * 59.72339 * 8 7 6 31 31 H 1.09003 * 109.46863 * 59.99870 * 10 9 8 32 32 H 1.09001 * 109.47172 * 179.97438 * 10 9 8 33 33 H 1.09000 * 109.46753 * 300.00454 * 10 9 8 34 34 H 1.08990 * 109.47258 * 60.00092 * 11 9 8 35 35 H 1.09001 * 109.46739 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47407 * 299.99599 * 11 9 8 37 37 H 1.08990 * 109.47021 * 299.99845 * 12 9 8 38 38 H 1.09002 * 109.46620 * 60.00037 * 12 9 8 39 39 H 0.97000 * 120.00497 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2931 2.1588 1.0793 5 7 2.7244 3.3802 0.8188 6 6 2.8390 3.7071 -0.4309 7 7 3.2737 4.9397 -0.8927 8 6 3.6508 5.9871 0.0596 9 6 4.0965 7.2352 -0.7050 10 6 5.2985 6.8909 -1.5869 11 6 2.9464 7.7336 -1.5824 12 6 4.4898 8.3293 0.2895 13 6 4.9293 9.5583 -0.4637 14 1 4.9279 9.5592 -1.5437 15 6 5.3323 10.6821 0.2260 16 7 5.3336 10.6814 1.5412 17 14 5.8765 12.2059 -0.7076 18 1 4.7606 12.6890 -1.5599 19 1 6.2571 13.2682 0.2577 20 1 7.0439 11.8719 -1.5627 21 16 2.3690 2.3987 -1.4261 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 2.1625 1.7883 2.0853 28 1 3.3319 5.1074 -1.8463 29 1 2.7945 6.2324 0.6879 30 1 4.4701 5.6321 0.6846 31 1 5.0179 6.1115 -2.2954 32 1 5.6157 7.7799 -2.1320 33 1 6.1178 6.5357 -0.9618 34 1 2.0901 7.9788 -0.9542 35 1 3.2641 8.6224 -2.1274 36 1 2.6658 6.9543 -2.2910 37 1 3.6333 8.5745 0.9174 38 1 5.3090 7.9744 0.9148 39 1 5.6167 11.4721 2.0264 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309663857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:19 Heat of formation + Delta-G solvation = 2.524083 kcal Electronic energy + Delta-G solvation = -17983.786418 eV Core-core repulsion = 15244.519151 eV Total energy + Delta-G solvation = -2739.267267 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68014 -39.18228 -36.11996 -34.72430 -33.84576 -29.53677 -28.75586 -27.99431 -27.73972 -25.59233 -24.59110 -23.27560 -20.43963 -20.31112 -18.90493 -18.35033 -17.40167 -16.50222 -16.27120 -16.02109 -15.49249 -15.25016 -14.90967 -14.63934 -14.53446 -14.27875 -13.96150 -13.94323 -13.26831 -12.86041 -12.75765 -12.62905 -12.53813 -12.36454 -12.35060 -12.23460 -12.00958 -11.64491 -11.60879 -11.04989 -10.96308 -10.88133 -10.50975 -10.40980 -10.07735 -8.56243 -8.14263 -6.22230 0.10493 0.17984 0.87856 1.42196 1.44197 1.51442 2.08724 2.32160 2.45233 3.20026 3.76019 3.97067 4.06642 4.07242 4.21882 4.25328 4.52072 4.66529 4.71707 4.72396 4.74793 4.86012 4.93712 5.08058 5.09563 5.10702 5.19285 5.30081 5.40240 5.43331 5.47983 5.50307 5.54541 5.78655 5.87670 5.91995 6.24445 6.31055 6.92457 7.16172 7.45485 8.98078 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.052285 B = 0.003407 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.394579 B = 8215.713564 C = 8460.663170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C -0.260 4.260 4 C 0.062 3.938 5 N -0.589 5.589 6 C 0.300 3.700 7 N -0.682 5.682 8 C 0.164 3.836 9 C -0.065 4.065 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.043 3.957 13 C -0.516 4.516 14 H 0.072 0.928 15 C -0.004 4.004 16 N -0.938 5.938 17 Si 0.958 3.042 18 H -0.267 1.267 19 H -0.290 1.290 20 H -0.267 1.267 21 S 0.108 5.892 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.184 0.816 28 H 0.420 0.580 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.065 0.935 37 H -0.014 1.014 38 H -0.014 1.014 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 -20.530 -7.885 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.383 4.383 4 C -0.087 4.087 5 N -0.315 5.315 6 C -0.071 4.071 7 N -0.323 5.323 8 C 0.038 3.962 9 C -0.066 4.066 10 C -0.178 4.178 11 C -0.178 4.178 12 C 0.005 3.995 13 C -0.554 4.554 14 H 0.090 0.910 15 C -0.201 4.201 16 N -0.579 5.579 17 Si 0.783 3.217 18 H -0.192 1.192 19 H -0.216 1.216 20 H -0.192 1.192 21 S 0.358 5.642 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.201 0.799 28 H 0.260 0.740 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.587 -20.039 -8.296 22.977 hybrid contribution 0.405 1.162 0.904 1.527 sum -7.181 -18.876 -7.392 21.507 Atomic orbital electron populations 1.21794 0.94203 1.02624 1.01747 1.19954 0.96054 0.87323 1.04055 1.25691 1.16098 1.03673 0.92886 1.21584 0.98919 0.87289 1.00890 1.66442 1.27093 1.20489 1.17510 1.23842 0.97939 0.92982 0.92290 1.44105 1.70475 1.08405 1.09340 1.21150 0.98192 0.86093 0.90778 1.20729 0.96415 0.93015 0.96420 1.21683 0.96490 1.00945 0.98676 1.21680 0.96485 1.00928 0.98701 1.18933 0.94185 0.92837 0.93503 1.21561 1.42394 0.97780 0.93638 0.91019 1.25938 0.96296 1.02282 0.95576 1.70111 1.49625 1.30323 1.07864 0.85608 0.79099 0.78739 0.78251 1.19178 1.21624 1.19163 1.83590 1.65514 1.04684 1.10432 0.93009 0.93364 0.90431 0.90140 0.88667 0.79917 0.73955 0.93782 0.93764 0.91641 0.92476 0.94360 0.94371 0.92481 0.91645 0.99522 0.99521 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.89 71.98 0.71 -1.13 16 2 C -0.03 -0.47 6.46 29.84 0.19 -0.28 16 3 C -0.26 -5.49 5.83 24.58 0.14 -5.35 16 4 C 0.06 1.59 11.24 83.54 0.94 2.53 16 5 N -0.59 -19.14 10.14 -202.01 -2.05 -21.19 16 6 C 0.30 8.85 8.09 179.32 1.45 10.30 16 7 N -0.68 -19.98 5.12 -351.01 -1.80 -21.77 16 8 C 0.16 5.95 4.84 86.38 0.42 6.36 16 9 C -0.07 -2.50 0.54 -52.18 -0.03 -2.52 16 10 C -0.12 -4.15 8.05 71.99 0.58 -3.57 16 11 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 12 C 0.04 2.20 4.04 29.85 0.12 2.33 16 13 C -0.52 -27.78 7.65 25.60 0.20 -27.58 16 14 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 15 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 16 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 17 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 S 0.11 2.39 23.21 -56.49 -1.31 1.08 16 22 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.42 10.26 6.29 -92.71 -0.58 9.68 16 29 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 32 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 36 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -65.55 327.61 3.37 -62.18 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.45 Total: 13.18 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 5.76 Total: -22.26 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -3.56 Total: -99.91 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.31 Total: 1.08 kcal Total: -65.55 3.37 -62.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309663857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.707 kcal (2) G-P(sol) polarization free energy of solvation -65.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds