Wall clock time and date at job start Mon Mar 30 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 C 1.50697 * 109.47131 * 240.00052 * 2 1 3 5 5 H 1.07996 * 119.99918 * 240.00401 * 4 2 1 6 6 C 1.37878 * 120.00103 * 59.99988 * 4 2 1 7 7 N 1.31510 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00126 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46759 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47082 * 119.99809 * 8 6 4 11 11 H 1.48495 * 109.47182 * 240.00020 * 8 6 4 12 12 N 1.46901 * 109.46900 * 119.99786 * 2 1 3 13 13 C 1.46898 * 110.99866 * 274.99989 * 12 2 1 14 14 H 1.08992 * 109.47517 * 35.00457 * 13 12 2 15 15 C 1.53000 * 109.47187 * 274.99694 * 13 12 2 16 16 C 1.53007 * 109.46693 * 155.00217 * 13 12 2 17 17 C 1.50699 * 109.46928 * 294.99849 * 16 13 12 18 18 N 1.31879 * 119.62659 * 90.00515 * 17 16 13 19 19 C 1.31855 * 121.73725 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.79317 * 0.02562 * 19 18 17 21 21 C 1.38601 * 119.17636 * 0.23721 * 20 19 18 22 22 C 1.38306 * 119.62818 * 270.02190 * 17 16 13 23 23 Cl 1.73595 * 120.43052 * 0.02562 * 22 17 16 24 24 H 1.09005 * 109.47285 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47534 * 300.00166 * 1 2 3 26 26 H 1.09003 * 109.47288 * 60.00120 * 1 2 3 27 27 H 0.97000 * 120.00441 * 179.97438 * 7 6 4 28 28 H 1.00900 * 110.99826 * 151.04450 * 12 2 1 29 29 H 1.09005 * 109.46415 * 60.00411 * 15 13 12 30 30 H 1.09001 * 109.46918 * 179.97438 * 15 13 12 31 31 H 1.08992 * 109.47515 * 300.00764 * 15 13 12 32 32 H 1.08999 * 109.46786 * 175.00169 * 16 13 12 33 33 H 1.08998 * 109.47234 * 54.99813 * 16 13 12 34 34 H 1.07993 * 119.60114 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.40833 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.79849 * 179.74680 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1455 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.4111 0.9809 2.3224 16 6 1.9769 -0.5797 3.6454 17 6 0.6190 -1.2280 3.7263 18 7 0.4413 -2.4339 3.2230 19 6 -0.7289 -3.0398 3.2705 20 6 -1.8206 -2.4256 3.8549 21 6 -1.6750 -1.1555 4.3904 22 6 -0.4270 -0.5516 4.3274 23 17 -0.1842 1.0360 4.9864 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.7087 1.1613 -3.4844 28 1 2.9173 -1.1205 1.0288 29 1 3.4862 1.5525 1.3972 30 1 3.4574 1.6603 3.1735 31 1 4.2359 0.2706 2.3786 32 1 2.1123 0.0875 4.4967 33 1 2.7485 -1.3494 3.6606 34 1 -0.8355 -4.0278 2.8477 35 1 -2.7763 -2.9275 3.8901 36 1 -2.5114 -0.6497 4.8495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309767776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:10 Heat of formation + Delta-G solvation = 18.617240 kcal Electronic energy + Delta-G solvation = -18586.822073 eV Core-core repulsion = 15710.375857 eV Total energy + Delta-G solvation = -2876.446216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08021 -36.86963 -36.47085 -33.74032 -32.28040 -31.57863 -30.15545 -26.97803 -26.66258 -25.08992 -23.35858 -22.33791 -20.56360 -19.43471 -16.94773 -16.53591 -16.31730 -15.64447 -14.93190 -14.31448 -14.06351 -14.00054 -13.40915 -13.06970 -12.94548 -12.35682 -12.22576 -11.92019 -11.87892 -11.76155 -11.36526 -11.17364 -10.91403 -10.81782 -10.59286 -10.33957 -10.26351 -10.06988 -9.80452 -9.53653 -9.17154 -8.76465 -8.59094 -8.42260 -7.08816 -5.97852 -4.03218 1.14142 1.37063 2.18428 3.30996 3.38839 3.43542 3.90430 4.44128 4.53484 4.77383 4.88480 5.11089 5.27128 5.35064 5.45476 5.49342 5.60674 5.83440 5.90154 5.97084 6.07555 6.14391 6.19834 6.36642 6.56469 6.67064 6.75256 6.94934 7.21356 7.31707 7.59173 7.84748 7.97188 8.23096 8.33857 8.50811 8.78387 9.09817 9.62503 11.08569 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.005710 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.907612 B = 4902.885149 C = 5340.858764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.512 4.512 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.673 5.673 13 C 0.092 3.908 14 H 0.071 0.929 15 C -0.176 4.176 16 C -0.068 4.068 17 C 0.179 3.821 18 N -0.436 5.436 19 C 0.108 3.892 20 C -0.178 4.178 21 C -0.070 4.070 22 C -0.095 4.095 23 Cl -0.064 7.064 24 H 0.027 0.973 25 H -0.002 1.002 26 H 0.078 0.922 27 H 0.259 0.741 28 H 0.331 0.669 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.137 0.863 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -2.648 15.229 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.551 4.551 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.303 5.303 13 C -0.020 4.020 14 H 0.090 0.910 15 C -0.235 4.235 16 C -0.106 4.106 17 C 0.041 3.959 18 N -0.144 5.144 19 C -0.050 4.050 20 C -0.198 4.198 21 C -0.096 4.096 22 C -0.124 4.124 23 Cl -0.036 7.036 24 H 0.046 0.954 25 H 0.017 0.983 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.175 0.825 35 H 0.155 0.845 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.122 -3.075 14.909 15.540 hybrid contribution 0.096 0.729 -0.794 1.082 sum -3.025 -2.346 14.115 14.625 Atomic orbital electron populations 1.21665 0.98252 0.98880 0.98844 1.19049 0.92228 0.92274 0.85766 0.98283 1.21316 1.31008 1.12290 0.90464 0.92218 1.24916 0.95154 0.95022 0.98991 1.69912 1.36910 1.23060 1.23179 0.86504 0.78576 0.79655 0.83038 1.19753 1.21096 1.21187 1.60761 1.32168 1.31949 1.05457 1.21385 0.96451 0.93158 0.91034 0.91046 1.22473 0.98535 1.00688 1.01849 1.20767 0.91951 0.99141 0.98753 1.21067 0.95239 0.89830 0.89811 1.67738 1.24675 1.08717 1.13301 1.22892 0.88084 0.99714 0.94266 1.22056 1.00851 0.95553 1.01356 1.21395 0.95629 0.94943 0.97641 1.21916 0.96587 0.89094 1.04836 1.98346 1.96941 1.23901 1.84366 0.95388 0.98288 0.90364 0.93122 0.85119 0.92017 0.93238 0.92788 0.90437 0.89870 0.82543 0.84545 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.17 37.16 0.34 -2.70 16 2 C 0.21 5.47 2.41 -68.86 -0.17 5.31 16 3 H 0.00 -0.01 7.11 -51.93 -0.37 -0.38 16 4 C -0.51 -14.21 8.59 -34.44 -0.30 -14.50 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.86 11.32 55.43 0.63 -25.23 16 8 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.67 -14.40 5.76 -100.96 -0.58 -14.98 16 13 C 0.09 1.65 2.39 -67.71 -0.16 1.49 16 14 H 0.07 1.42 7.11 -51.93 -0.37 1.05 16 15 C -0.18 -2.84 9.15 37.16 0.34 -2.50 16 16 C -0.07 -1.04 4.79 -27.88 -0.13 -1.18 16 17 C 0.18 2.92 5.77 -82.55 -0.48 2.44 16 18 N -0.44 -7.38 10.27 -9.45 -0.10 -7.47 16 19 C 0.11 1.51 11.18 -17.54 -0.20 1.32 16 20 C -0.18 -2.13 10.11 -39.45 -0.40 -2.53 16 21 C -0.07 -0.88 9.98 -39.24 -0.39 -1.28 16 22 C -0.10 -1.40 6.34 -39.35 -0.25 -1.65 16 23 Cl -0.06 -0.86 27.33 -51.86 -1.42 -2.27 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.00 -0.05 7.43 -51.93 -0.39 -0.43 16 26 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.33 7.05 7.96 -39.29 -0.31 6.74 16 29 H 0.06 1.12 7.43 -51.93 -0.39 0.73 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.08 1.05 6.90 -51.93 -0.36 0.69 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -30.03 313.39 -8.64 -38.67 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.99 Total: 4.19 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.88 Total: -14.20 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.05 Total: -47.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.42 Total: -2.27 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.03 -8.64 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309767776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.290 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds