Wall clock time and date at job start Mon Mar 30 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 C 1.50697 * 109.47131 * 240.00052 * 2 1 3 5 5 H 1.07996 * 119.99918 * 240.00401 * 4 2 1 6 6 C 1.37878 * 120.00103 * 59.99988 * 4 2 1 7 7 N 1.31510 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00126 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46759 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47082 * 119.99809 * 8 6 4 11 11 H 1.48495 * 109.47182 * 240.00020 * 8 6 4 12 12 N 1.46901 * 109.46900 * 119.99786 * 2 1 3 13 13 C 1.46898 * 110.99866 * 274.99989 * 12 2 1 14 14 H 1.08992 * 109.47517 * 35.00457 * 13 12 2 15 15 C 1.53000 * 109.47187 * 274.99694 * 13 12 2 16 16 C 1.53007 * 109.46693 * 155.00217 * 13 12 2 17 17 C 1.50699 * 109.46928 * 294.99849 * 16 13 12 18 18 N 1.31879 * 119.62659 * 90.00515 * 17 16 13 19 19 C 1.31855 * 121.73725 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.79317 * 0.02562 * 19 18 17 21 21 C 1.38601 * 119.17636 * 0.23721 * 20 19 18 22 22 C 1.38306 * 119.62818 * 270.02190 * 17 16 13 23 23 Cl 1.73595 * 120.43052 * 0.02562 * 22 17 16 24 24 H 1.09005 * 109.47285 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47534 * 300.00166 * 1 2 3 26 26 H 1.09003 * 109.47288 * 60.00120 * 1 2 3 27 27 H 0.97000 * 120.00441 * 179.97438 * 7 6 4 28 28 H 1.00900 * 110.99826 * 151.04450 * 12 2 1 29 29 H 1.09005 * 109.46415 * 60.00411 * 15 13 12 30 30 H 1.09001 * 109.46918 * 179.97438 * 15 13 12 31 31 H 1.08992 * 109.47515 * 300.00764 * 15 13 12 32 32 H 1.08999 * 109.46786 * 175.00169 * 16 13 12 33 33 H 1.08998 * 109.47234 * 54.99813 * 16 13 12 34 34 H 1.07993 * 119.60114 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.40833 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.79849 * 179.74680 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1455 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.4111 0.9809 2.3224 16 6 1.9769 -0.5797 3.6454 17 6 0.6190 -1.2280 3.7263 18 7 0.4413 -2.4339 3.2230 19 6 -0.7289 -3.0398 3.2705 20 6 -1.8206 -2.4256 3.8549 21 6 -1.6750 -1.1555 4.3904 22 6 -0.4270 -0.5516 4.3274 23 17 -0.1842 1.0360 4.9864 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.7087 1.1613 -3.4844 28 1 2.9173 -1.1205 1.0288 29 1 3.4862 1.5525 1.3972 30 1 3.4574 1.6603 3.1735 31 1 4.2359 0.2706 2.3786 32 1 2.1123 0.0875 4.4967 33 1 2.7485 -1.3494 3.6606 34 1 -0.8355 -4.0278 2.8477 35 1 -2.7763 -2.9275 3.8901 36 1 -2.5114 -0.6497 4.8495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309767776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:09 Heat of formation + Delta-G solvation = 0.164297 kcal Electronic energy + Delta-G solvation = -18587.622253 eV Core-core repulsion = 15710.375857 eV Total energy + Delta-G solvation = -2877.246396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16167 -38.48249 -37.54060 -35.54817 -33.59776 -32.94737 -31.71204 -28.73631 -27.90887 -27.24174 -24.41269 -23.55896 -22.21848 -21.17453 -18.51440 -17.88079 -17.60209 -16.92144 -16.67291 -15.85217 -15.57394 -15.39975 -14.78340 -14.58513 -14.15015 -13.88668 -13.70363 -13.36693 -13.22523 -13.01530 -12.92139 -12.83988 -12.58565 -12.50635 -12.21908 -12.21673 -11.95983 -11.80465 -11.55556 -10.87265 -10.61154 -10.56562 -10.26323 -9.67375 -8.85178 -8.11990 -6.25053 0.07794 0.34590 1.12084 1.40213 1.42080 1.54101 2.42029 2.82310 3.16659 3.45844 3.60764 3.85405 3.95926 4.14032 4.15145 4.32890 4.49237 4.51932 4.69878 4.75544 4.81699 4.91354 4.94567 5.03506 5.06964 5.12526 5.22696 5.27355 5.34243 5.51622 5.69957 5.72731 5.88230 6.23718 6.56010 6.85996 7.09034 7.15324 7.45488 8.94006 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.005710 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.907612 B = 4902.885149 C = 5340.858764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.224 3.776 3 H -0.032 1.032 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.669 5.669 13 C 0.094 3.906 14 H 0.050 0.950 15 C -0.169 4.169 16 C -0.058 4.058 17 C 0.152 3.848 18 N -0.471 5.471 19 C 0.089 3.911 20 C -0.165 4.165 21 C -0.074 4.074 22 C -0.107 4.107 23 Cl -0.058 7.058 24 H 0.018 0.982 25 H 0.007 0.993 26 H 0.053 0.947 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 -3.491 15.997 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.115 3.885 3 H -0.014 1.014 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.299 5.299 13 C -0.018 4.018 14 H 0.068 0.932 15 C -0.228 4.228 16 C -0.096 4.096 17 C 0.014 3.986 18 N -0.180 5.180 19 C -0.068 4.068 20 C -0.185 4.185 21 C -0.100 4.100 22 C -0.136 4.136 23 Cl -0.030 7.030 24 H 0.037 0.963 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.194 0.806 35 H 0.192 0.808 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.514 -3.917 15.702 16.561 hybrid contribution 0.158 0.993 -0.966 1.394 sum -3.356 -2.924 14.736 15.394 Atomic orbital electron populations 1.21421 0.98497 0.97816 0.97992 1.18779 0.91892 0.90710 0.87095 1.01416 1.21612 1.31212 1.12390 0.91650 0.92479 1.25717 0.95261 0.95686 1.01986 1.70036 1.37737 1.24238 1.23941 0.85470 0.78078 0.78641 0.79200 1.19097 1.20736 1.20617 1.60668 1.32167 1.32385 1.04716 1.21393 0.96655 0.92780 0.90935 0.93151 1.22377 0.97850 1.00995 1.01601 1.20653 0.92305 0.99087 0.97581 1.21133 0.95840 0.90350 0.91321 1.67668 1.26500 1.09416 1.14384 1.23368 0.88038 1.00702 0.94685 1.22454 1.01712 0.95093 0.99211 1.21816 0.95662 0.95297 0.97250 1.22063 0.97139 0.89456 1.04966 1.98341 1.96985 1.23436 1.84213 0.96288 0.97396 0.92786 0.92981 0.85161 0.94686 0.90540 0.91427 0.88521 0.89766 0.80624 0.80812 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.19 9.17 71.98 0.66 -4.53 16 2 C 0.22 11.69 2.41 44.17 0.11 11.80 16 3 H -0.03 -1.83 7.11 -2.39 -0.02 -1.84 16 4 C -0.53 -29.77 8.59 25.60 0.22 -29.55 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.14 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -54.09 11.32 21.45 0.24 -53.85 16 8 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.67 -28.95 5.76 -473.31 -2.73 -31.68 16 13 C 0.09 3.36 2.39 44.92 0.11 3.47 16 14 H 0.05 2.02 7.11 -2.39 -0.02 2.01 16 15 C -0.17 -5.37 9.15 71.98 0.66 -4.71 16 16 C -0.06 -1.75 4.79 29.85 0.14 -1.60 16 17 C 0.15 4.83 5.77 42.57 0.25 5.07 16 18 N -0.47 -15.62 10.27 -183.80 -1.89 -17.51 16 19 C 0.09 2.36 11.18 84.69 0.95 3.31 16 20 C -0.17 -3.51 10.11 22.36 0.23 -3.29 16 21 C -0.07 -1.71 9.98 22.49 0.22 -1.48 16 22 C -0.11 -3.00 6.34 22.42 0.14 -2.86 16 23 Cl -0.06 -1.48 27.33 -2.72 -0.07 -1.55 16 24 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.01 0.35 7.43 -2.39 -0.02 0.34 16 26 H 0.05 3.09 6.07 -2.39 -0.01 3.08 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.33 14.22 7.96 -89.69 -0.71 13.51 16 29 H 0.03 1.28 7.43 -2.38 -0.02 1.26 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 32 H 0.10 2.48 6.90 -2.39 -0.02 2.47 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 35 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -65.00 313.39 2.07 -62.93 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.37 Total: 18.53 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 4.13 Total: -23.24 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.37 Total: -103.04 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.07 Total: -1.55 kcal Total: -65.00 2.07 -62.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309767776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.094 kcal (2) G-P(sol) polarization free energy of solvation -65.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds