Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47311 * 2 1 4 4 C 1.53002 * 109.47229 * 239.99893 * 2 1 3 5 5 C 1.50695 * 109.46983 * 174.99771 * 4 2 1 6 6 N 1.31876 * 119.62649 * 90.00456 * 5 4 2 7 7 C 1.31859 * 121.74090 * 180.02562 * 6 5 4 8 8 C 1.38221 * 120.78998 * 359.97438 * 7 6 5 9 9 C 1.38608 * 119.17929 * 0.27043 * 8 7 6 10 10 C 1.38307 * 119.62967 * 270.02323 * 5 4 2 11 11 Cl 1.73598 * 120.43089 * 0.02562 * 10 5 4 12 12 N 1.46904 * 109.47096 * 120.00110 * 2 1 3 13 13 C 1.46895 * 110.99639 * 236.11875 * 12 2 1 14 14 H 1.08996 * 109.47930 * 326.59450 * 13 12 2 15 15 C 1.53002 * 109.47387 * 86.60027 * 13 12 2 16 16 C 1.50709 * 109.47040 * 206.59643 * 13 12 2 17 17 H 1.07999 * 119.99410 * 0.02562 * 16 13 12 18 18 C 1.37870 * 120.00039 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00145 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99972 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47240 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47195 * 119.99773 * 20 18 16 23 23 H 1.48494 * 109.47465 * 239.99635 * 20 18 16 24 24 H 1.08995 * 109.47113 * 296.18059 * 1 2 3 25 25 H 1.08994 * 109.47129 * 56.18503 * 1 2 3 26 26 H 1.09003 * 109.47271 * 176.18469 * 1 2 3 27 27 H 1.09004 * 109.47047 * 55.00283 * 4 2 1 28 28 H 1.09000 * 109.47180 * 294.99987 * 4 2 1 29 29 H 1.07995 * 119.59998 * 179.97438 * 7 6 5 30 30 H 1.08000 * 120.41075 * 179.97438 * 8 7 6 31 31 H 1.08006 * 120.79837 * 179.74959 * 9 8 7 32 32 H 1.00905 * 110.99919 * 112.16540 * 12 2 1 33 33 H 1.08997 * 109.47294 * 186.20811 * 15 13 12 34 34 H 1.09002 * 109.46633 * 306.21107 * 15 13 12 35 35 H 1.09001 * 109.46986 * 66.20202 * 15 13 12 36 36 H 0.96997 * 120.00028 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 7 4.2858 -1.5412 -0.7403 7 6 5.6031 -1.4891 -0.7699 8 6 6.2560 -0.4518 -1.4087 9 6 5.5086 0.5440 -2.0178 10 6 4.1245 0.4534 -1.9702 11 17 3.1374 1.6688 -2.7198 12 7 2.0197 -0.6925 1.1995 13 6 2.9159 0.1728 1.9778 14 1 3.4751 0.8191 1.3013 15 6 2.0895 1.0317 2.9371 16 6 3.8764 -0.6792 2.7670 17 1 3.8263 -1.7558 2.6969 18 6 4.8191 -0.0843 3.5784 19 7 4.8804 1.2266 3.6633 20 14 6.0092 -1.1404 4.5571 21 1 5.7346 -2.5748 4.2881 22 1 7.4021 -0.8196 4.1543 23 1 5.8375 -0.8663 6.0064 24 1 -0.3633 0.4534 0.9222 25 1 -0.3633 0.5719 -0.8538 26 1 -0.3634 -1.0254 -0.0684 27 1 1.6054 -0.2617 -2.1370 28 1 1.7517 -1.7715 -1.2056 29 1 6.1785 -2.2664 -0.2893 30 1 7.3352 -0.4150 -1.4289 31 1 5.9917 1.3687 -2.5208 32 1 2.4753 -1.5593 0.9559 33 1 2.7410 1.7500 3.4347 34 1 1.3213 1.5650 2.3772 35 1 1.6174 0.3919 3.6827 36 1 5.5434 1.6452 4.2344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309767785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = 19.399103 kcal Electronic energy + Delta-G solvation = -18984.887234 eV Core-core repulsion = 16108.474921 eV Total energy + Delta-G solvation = -2876.412312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10998 -36.78403 -36.44204 -33.68063 -32.19772 -31.45444 -30.22578 -27.12256 -26.62662 -24.99354 -23.33437 -22.20437 -20.36550 -19.60483 -16.87694 -16.53383 -16.25501 -15.59473 -14.87553 -14.54845 -14.01365 -13.89108 -13.33910 -13.13213 -12.68443 -12.43894 -12.19050 -11.88015 -11.76498 -11.49844 -11.40695 -11.15288 -10.91380 -10.75466 -10.68635 -10.44579 -10.11898 -10.04164 -9.73405 -9.51152 -9.22163 -8.70314 -8.54975 -8.41148 -7.12050 -5.95272 -3.98891 1.19189 1.40514 2.21705 3.29352 3.38068 3.42776 3.92921 4.45169 4.51354 4.80413 4.96583 5.17877 5.31839 5.39005 5.46912 5.54924 5.58659 5.78797 6.00761 6.09375 6.11637 6.21698 6.25818 6.44569 6.62106 6.74514 6.81308 6.98072 7.23404 7.35316 7.62703 7.88809 8.01436 8.19750 8.35038 8.55000 8.83932 9.14383 9.65623 11.11638 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.008217 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.339409 B = 3406.566192 C = 4237.919737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.091 3.909 3 H 0.059 0.941 4 C -0.095 4.095 5 C 0.155 3.845 6 N -0.450 5.450 7 C 0.122 3.878 8 C -0.170 4.170 9 C -0.066 4.066 10 C -0.089 4.089 11 Cl -0.063 7.063 12 N -0.684 5.684 13 C 0.219 3.781 14 H -0.006 1.006 15 C -0.122 4.122 16 C -0.503 4.503 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.285 1.285 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.342 0.658 33 H 0.073 0.927 34 H 0.004 0.996 35 H 0.031 0.969 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -1.381 -12.997 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.021 4.021 3 H 0.077 0.923 4 C -0.134 4.134 5 C 0.016 3.984 6 N -0.159 5.159 7 C -0.035 4.035 8 C -0.190 4.190 9 C -0.092 4.092 10 C -0.118 4.118 11 Cl -0.035 7.035 12 N -0.317 5.317 13 C 0.111 3.889 14 H 0.012 0.988 15 C -0.181 4.181 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.211 1.211 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.177 0.823 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.092 0.908 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.464 -1.680 -12.158 12.361 hybrid contribution 2.063 0.482 -0.325 2.143 sum 0.599 -1.199 -12.483 12.555 Atomic orbital electron populations 1.21779 0.95323 1.01115 1.00781 1.21533 0.95112 0.97278 0.88180 0.92250 1.21300 0.87996 1.03219 1.00884 1.21186 0.97260 0.88838 0.91125 1.67644 1.06979 1.26291 1.14972 1.22792 0.90323 0.96853 0.93545 1.22059 1.01388 0.95484 1.00059 1.21406 0.91624 0.98643 0.97547 1.21811 0.92517 0.93993 1.03509 1.98340 1.70164 1.54375 1.80606 1.60834 1.44461 1.07993 1.18430 1.19073 0.88160 0.90721 0.90939 0.98800 1.21716 0.97698 0.99577 0.99070 1.21285 1.14339 0.93017 1.25559 0.92296 1.24891 0.97483 0.94841 0.96855 1.69932 1.35309 1.08422 1.39506 0.86579 0.80782 0.80836 0.80051 1.19705 1.21326 1.21131 0.92175 0.93867 0.92972 0.90005 0.89539 0.82342 0.84367 0.84367 0.83859 0.90793 0.97726 0.95009 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.52 37.16 0.35 -1.73 16 2 C 0.09 1.67 2.57 -67.71 -0.17 1.50 16 3 H 0.06 1.22 7.24 -51.93 -0.38 0.84 16 4 C -0.09 -1.52 4.41 -27.88 -0.12 -1.65 16 5 C 0.15 2.68 5.74 -82.55 -0.47 2.21 16 6 N -0.45 -8.17 9.36 -9.45 -0.09 -8.26 16 7 C 0.12 1.96 11.18 -17.55 -0.20 1.77 16 8 C -0.17 -2.41 10.11 -39.45 -0.40 -2.81 16 9 C -0.07 -0.95 9.98 -39.24 -0.39 -1.35 16 10 C -0.09 -1.44 6.34 -39.35 -0.25 -1.69 16 11 Cl -0.06 -0.91 27.33 -51.86 -1.42 -2.32 16 12 N -0.68 -15.04 6.03 -100.95 -0.61 -15.65 16 13 C 0.22 5.63 2.45 -68.86 -0.17 5.46 16 14 H -0.01 -0.16 7.49 -51.93 -0.39 -0.55 16 15 C -0.12 -3.15 9.14 37.16 0.34 -2.81 16 16 C -0.50 -13.88 8.59 -34.44 -0.30 -14.18 16 17 H 0.06 1.64 7.59 -52.49 -0.40 1.25 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.81 11.39 55.43 0.63 -25.18 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.15 6.90 -51.93 -0.36 0.79 16 28 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 29 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 30 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.34 7.62 6.50 -39.29 -0.26 7.36 16 33 H 0.07 2.06 6.26 -51.93 -0.33 1.73 16 34 H 0.00 0.09 8.04 -51.93 -0.42 -0.33 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -29.93 313.47 -8.69 -38.62 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.04 Total: 5.32 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.87 Total: -13.68 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.07 Total: -49.09 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.42 Total: -2.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.93 -8.69 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309767785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.015 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds