Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47311 * 2 1 4 4 C 1.53002 * 109.47229 * 239.99893 * 2 1 3 5 5 C 1.50695 * 109.46983 * 174.99771 * 4 2 1 6 6 N 1.31876 * 119.62649 * 90.00456 * 5 4 2 7 7 C 1.31859 * 121.74090 * 180.02562 * 6 5 4 8 8 C 1.38221 * 120.78998 * 359.97438 * 7 6 5 9 9 C 1.38608 * 119.17929 * 0.27043 * 8 7 6 10 10 C 1.38307 * 119.62967 * 270.02323 * 5 4 2 11 11 Cl 1.73598 * 120.43089 * 0.02562 * 10 5 4 12 12 N 1.46904 * 109.47096 * 120.00110 * 2 1 3 13 13 C 1.46895 * 110.99639 * 236.11875 * 12 2 1 14 14 H 1.08996 * 109.47930 * 326.59450 * 13 12 2 15 15 C 1.53002 * 109.47387 * 86.60027 * 13 12 2 16 16 C 1.50709 * 109.47040 * 206.59643 * 13 12 2 17 17 H 1.07999 * 119.99410 * 0.02562 * 16 13 12 18 18 C 1.37870 * 120.00039 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00145 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99972 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47240 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47195 * 119.99773 * 20 18 16 23 23 H 1.48494 * 109.47465 * 239.99635 * 20 18 16 24 24 H 1.08995 * 109.47113 * 296.18059 * 1 2 3 25 25 H 1.08994 * 109.47129 * 56.18503 * 1 2 3 26 26 H 1.09003 * 109.47271 * 176.18469 * 1 2 3 27 27 H 1.09004 * 109.47047 * 55.00283 * 4 2 1 28 28 H 1.09000 * 109.47180 * 294.99987 * 4 2 1 29 29 H 1.07995 * 119.59998 * 179.97438 * 7 6 5 30 30 H 1.08000 * 120.41075 * 179.97438 * 8 7 6 31 31 H 1.08006 * 120.79837 * 179.74959 * 9 8 7 32 32 H 1.00905 * 110.99919 * 112.16540 * 12 2 1 33 33 H 1.08997 * 109.47294 * 186.20811 * 15 13 12 34 34 H 1.09002 * 109.46633 * 306.21107 * 15 13 12 35 35 H 1.09001 * 109.46986 * 66.20202 * 15 13 12 36 36 H 0.96997 * 120.00028 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 7 4.2858 -1.5412 -0.7403 7 6 5.6031 -1.4891 -0.7699 8 6 6.2560 -0.4518 -1.4087 9 6 5.5086 0.5440 -2.0178 10 6 4.1245 0.4534 -1.9702 11 17 3.1374 1.6688 -2.7198 12 7 2.0197 -0.6925 1.1995 13 6 2.9159 0.1728 1.9778 14 1 3.4751 0.8191 1.3013 15 6 2.0895 1.0317 2.9371 16 6 3.8764 -0.6792 2.7670 17 1 3.8263 -1.7558 2.6969 18 6 4.8191 -0.0843 3.5784 19 7 4.8804 1.2266 3.6633 20 14 6.0092 -1.1404 4.5571 21 1 5.7346 -2.5748 4.2881 22 1 7.4021 -0.8196 4.1543 23 1 5.8375 -0.8663 6.0064 24 1 -0.3633 0.4534 0.9222 25 1 -0.3633 0.5719 -0.8538 26 1 -0.3634 -1.0254 -0.0684 27 1 1.6054 -0.2617 -2.1370 28 1 1.7517 -1.7715 -1.2056 29 1 6.1785 -2.2664 -0.2893 30 1 7.3352 -0.4150 -1.4289 31 1 5.9917 1.3687 -2.5208 32 1 2.4753 -1.5593 0.9559 33 1 2.7410 1.7500 3.4347 34 1 1.3213 1.5650 2.3772 35 1 1.6174 0.3919 3.6827 36 1 5.5434 1.6452 4.2344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309767785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = 1.401169 kcal Electronic energy + Delta-G solvation = -18985.667683 eV Core-core repulsion = 16108.474921 eV Total energy + Delta-G solvation = -2877.192761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32434 -38.39780 -37.61679 -35.53191 -33.53503 -33.00157 -31.77093 -28.91501 -27.91734 -27.13125 -24.53134 -23.47012 -22.12257 -21.32561 -18.44781 -17.98184 -17.67767 -16.90449 -16.71917 -16.03730 -15.71689 -15.27280 -14.79501 -14.58522 -14.21585 -13.95319 -13.46914 -13.33270 -13.20793 -13.03808 -12.88358 -12.82970 -12.75202 -12.43889 -12.27182 -12.12088 -11.98334 -11.80527 -11.51840 -10.81521 -10.69125 -10.54653 -10.42454 -9.77955 -8.91525 -8.08239 -6.19183 -0.01353 0.23565 1.03405 1.38315 1.41868 1.53268 2.43376 2.71477 3.20608 3.32022 3.60922 3.80740 3.87137 4.05209 4.09603 4.33638 4.44231 4.48541 4.69467 4.81318 4.90210 4.92097 4.98362 5.01937 5.07075 5.09169 5.24709 5.29878 5.45570 5.57140 5.61827 5.76055 5.93182 6.26257 6.58826 6.89196 6.98124 7.13575 7.49788 8.97974 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.008217 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.339409 B = 3406.566192 C = 4237.919737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.090 3.910 3 H 0.036 0.964 4 C -0.086 4.086 5 C 0.130 3.870 6 N -0.478 5.478 7 C 0.098 3.902 8 C -0.164 4.164 9 C -0.073 4.073 10 C -0.102 4.102 11 Cl -0.052 7.052 12 N -0.683 5.683 13 C 0.233 3.767 14 H -0.042 1.042 15 C -0.111 4.111 16 C -0.514 4.514 17 H 0.052 0.948 18 C 0.015 3.985 19 N -0.920 5.920 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.285 1.285 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.174 0.826 30 H 0.173 0.827 31 H 0.165 0.835 32 H 0.339 0.661 33 H 0.050 0.950 34 H 0.020 0.980 35 H 0.024 0.976 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 -1.813 -13.768 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.021 4.021 3 H 0.054 0.946 4 C -0.125 4.125 5 C -0.009 4.009 6 N -0.188 5.188 7 C -0.059 4.059 8 C -0.183 4.183 9 C -0.099 4.099 10 C -0.131 4.131 11 Cl -0.023 7.023 12 N -0.316 5.316 13 C 0.125 3.875 14 H -0.024 1.024 15 C -0.170 4.170 16 C -0.553 4.553 17 H 0.070 0.930 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.211 1.211 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.191 0.809 30 H 0.190 0.810 31 H 0.183 0.817 32 H 0.158 0.842 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.067 -2.116 -12.948 13.163 hybrid contribution 1.932 0.656 -0.134 2.045 sum 0.865 -1.460 -13.082 13.191 Atomic orbital electron populations 1.21719 0.93009 1.02290 1.01318 1.21575 0.96698 0.95819 0.87992 0.94596 1.21210 0.87740 1.03255 1.00284 1.21375 0.97762 0.89603 0.92119 1.67588 1.08136 1.27250 1.15791 1.23228 0.90125 0.98191 0.94322 1.22443 1.03107 0.94329 0.98468 1.21829 0.91243 0.99457 0.97358 1.22001 0.93514 0.94048 1.03563 1.98334 1.69986 1.53730 1.80282 1.60806 1.42933 1.07558 1.20260 1.18753 0.88068 0.90319 0.90382 1.02404 1.21557 0.97514 0.99013 0.98899 1.21469 1.15075 0.92782 1.25925 0.93020 1.25629 0.99058 0.95937 0.97764 1.70060 1.35969 1.09874 1.40101 0.85587 0.78833 0.79395 0.78325 1.19109 1.20457 1.21081 0.93575 0.91092 0.91780 0.87963 0.89085 0.80870 0.81000 0.81711 0.84157 0.93139 0.96149 0.95647 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.52 71.98 0.69 -3.07 16 2 C 0.09 3.28 2.57 44.91 0.12 3.40 16 3 H 0.04 1.48 7.24 -2.39 -0.02 1.46 16 4 C -0.09 -2.69 4.41 29.85 0.13 -2.56 16 5 C 0.13 4.46 5.74 42.57 0.24 4.71 16 6 N -0.48 -17.35 9.36 -183.81 -1.72 -19.07 16 7 C 0.10 3.10 11.18 84.68 0.95 4.05 16 8 C -0.16 -4.37 10.11 22.35 0.23 -4.15 16 9 C -0.07 -2.00 9.98 22.49 0.22 -1.78 16 10 C -0.10 -3.21 6.34 22.42 0.14 -3.07 16 11 Cl -0.05 -1.42 27.33 -2.72 -0.07 -1.50 16 12 N -0.68 -30.13 6.03 -473.30 -2.85 -32.98 16 13 C 0.23 12.19 2.45 44.17 0.11 12.30 16 14 H -0.04 -2.45 7.49 -2.39 -0.02 -2.46 16 15 C -0.11 -5.81 9.14 71.98 0.66 -5.15 16 16 C -0.51 -28.58 8.59 25.60 0.22 -28.36 16 17 H 0.05 2.90 7.59 -2.91 -0.02 2.88 16 18 C 0.01 0.81 5.30 84.65 0.45 1.26 16 19 N -0.92 -53.69 11.39 21.44 0.24 -53.45 16 20 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.10 2.71 6.90 -2.38 -0.02 2.69 16 28 H 0.09 2.73 8.12 -2.39 -0.02 2.71 16 29 H 0.17 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.34 15.21 6.50 -89.69 -0.58 14.63 16 33 H 0.05 2.86 6.26 -2.39 -0.01 2.84 16 34 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 35 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -64.21 313.47 2.26 -61.94 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.49 Total: 21.55 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.15 Total: -22.42 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.33 Total: -105.49 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.07 Total: -1.50 kcal Total: -64.21 2.26 -61.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309767785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.345 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds