Wall clock time and date at job start Mon Mar 30 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46611 * 2 1 4 4 C 1.50695 * 109.47046 * 239.99785 * 2 1 3 5 5 H 1.08001 * 119.99598 * 239.99755 * 4 2 1 6 6 C 1.37879 * 120.00457 * 59.99835 * 4 2 1 7 7 N 1.31509 * 119.99445 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00134 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46740 * 90.00427 * 8 6 4 10 10 H 1.48501 * 109.47079 * 210.00013 * 8 6 4 11 11 H 1.48502 * 109.47104 * 330.00410 * 8 6 4 12 12 N 1.46898 * 109.47022 * 119.99561 * 2 1 3 13 13 C 1.46904 * 110.99987 * 274.10119 * 12 2 1 14 14 H 1.08996 * 109.47252 * 4.18832 * 13 12 2 15 15 C 1.53007 * 109.46921 * 124.18746 * 13 12 2 16 16 C 1.52995 * 109.47175 * 244.18636 * 13 12 2 17 17 C 1.50701 * 109.47319 * 64.99786 * 16 13 12 18 18 N 1.31873 * 119.62965 * 270.02553 * 17 16 13 19 19 C 1.31852 * 121.73959 * 179.67523 * 18 17 16 20 20 C 1.38238 * 120.79102 * 0.58679 * 19 18 17 21 21 C 1.38603 * 119.17468 * 359.42864 * 20 19 18 22 22 C 1.38313 * 119.62361 * 89.99647 * 17 16 13 23 23 Cl 1.73595 * 120.43228 * 0.02562 * 22 17 16 24 24 H 1.08997 * 109.47090 * 293.92644 * 1 2 3 25 25 H 1.09005 * 109.47108 * 53.92778 * 1 2 3 26 26 H 1.09001 * 109.46838 * 173.92551 * 1 2 3 27 27 H 0.97005 * 119.99834 * 179.97438 * 7 6 4 28 28 H 1.00895 * 111.00302 * 150.14851 * 12 2 1 29 29 H 1.09000 * 109.46563 * 175.12311 * 15 13 12 30 30 H 1.09000 * 109.46990 * 295.12416 * 15 13 12 31 31 H 1.08997 * 109.47239 * 55.13143 * 15 13 12 32 32 H 1.09009 * 109.47409 * 305.00168 * 16 13 12 33 33 H 1.09000 * 109.47554 * 184.99803 * 16 13 12 34 34 H 1.07999 * 119.60672 * 180.31453 * 19 18 17 35 35 H 1.07996 * 120.41153 * 179.69636 * 20 19 18 36 36 H 1.07998 * 120.79828 * 180.29469 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8294 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 1.3448 -2.1618 -4.4122 10 1 2.4873 -0.1405 -5.1120 11 1 3.6309 -1.7569 -3.7117 12 7 2.0197 -0.6924 1.1995 13 6 2.1027 0.2279 2.3416 14 1 1.7089 1.2022 2.0524 15 6 1.2811 -0.3291 3.5060 16 6 3.5632 0.3754 2.7725 17 6 4.3481 1.0373 1.6693 18 7 4.9235 0.2956 0.7431 19 6 5.6144 0.8311 -0.2440 20 6 5.7711 2.2014 -0.3362 21 6 5.1811 3.0147 0.6185 22 6 4.4563 2.4159 1.6394 23 17 3.6955 3.3843 2.8628 24 1 -0.3633 0.4168 0.9393 25 1 -0.3633 0.6051 -0.8307 26 1 -0.3633 -1.0219 -0.1088 27 1 0.7087 1.1610 -3.4845 28 1 2.9104 -1.1328 1.0245 29 1 1.4122 0.3081 4.3806 30 1 0.2273 -0.3530 3.2285 31 1 1.6187 -1.3390 3.7386 32 1 3.9832 -0.6096 2.9766 33 1 3.6163 0.9868 3.6733 34 1 6.0671 0.1912 -0.9870 35 1 6.3424 2.6332 -1.1446 36 1 5.2826 4.0888 0.5691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309767788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:19 Heat of formation + Delta-G solvation = 1.442532 kcal Electronic energy + Delta-G solvation = -18985.976634 eV Core-core repulsion = 16108.785666 eV Total energy + Delta-G solvation = -2877.190968 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.32474 -38.39812 -37.61668 -35.53058 -33.53462 -33.00163 -31.77103 -28.91531 -27.91626 -27.12997 -24.53129 -23.47018 -22.12605 -21.31824 -18.44146 -17.98152 -17.67614 -16.90518 -16.72115 -16.03488 -15.72112 -15.27395 -14.79161 -14.58875 -14.21790 -13.94928 -13.46526 -13.33731 -13.21720 -13.03439 -12.88645 -12.79981 -12.74581 -12.45186 -12.28664 -12.12144 -11.98033 -11.79962 -11.51863 -10.82278 -10.69609 -10.53944 -10.42364 -9.77977 -8.91327 -8.07986 -6.18969 -0.01303 0.23577 1.03415 1.39903 1.42338 1.51794 2.43571 2.71388 3.20844 3.32087 3.60976 3.80885 3.87108 4.05221 4.09521 4.33601 4.44200 4.48494 4.69716 4.81003 4.90264 4.92103 4.98383 5.01585 5.06757 5.09347 5.24988 5.29739 5.45320 5.56991 5.61746 5.76057 5.92889 6.26488 6.59053 6.89109 6.98171 7.13432 7.49908 8.98027 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.008196 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.925627 B = 3415.678110 C = 4242.769229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.234 3.766 3 H -0.042 1.042 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.284 1.284 11 H -0.265 1.265 12 N -0.683 5.683 13 C 0.090 3.910 14 H 0.036 0.964 15 C -0.125 4.125 16 C -0.086 4.086 17 C 0.130 3.870 18 N -0.478 5.478 19 C 0.098 3.902 20 C -0.164 4.164 21 C -0.073 4.073 22 C -0.102 4.102 23 Cl -0.052 7.052 24 H 0.019 0.981 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.259 0.741 28 H 0.339 0.661 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 4.578 9.051 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 H -0.024 1.024 4 C -0.554 4.554 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.189 1.189 12 N -0.315 5.315 13 C -0.021 4.021 14 H 0.054 0.946 15 C -0.183 4.183 16 C -0.125 4.125 17 C -0.009 4.009 18 N -0.188 5.188 19 C -0.059 4.059 20 C -0.183 4.183 21 C -0.099 4.099 22 C -0.131 4.131 23 Cl -0.023 7.023 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.158 0.842 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.190 0.810 35 H 0.190 0.810 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.655 3.627 9.247 13.174 hybrid contribution 0.733 1.274 -1.388 2.022 sum 9.388 4.901 7.859 13.188 Atomic orbital electron populations 1.21560 0.98516 0.98922 0.98001 1.18738 0.91733 0.89929 0.87061 1.02425 1.21432 1.30570 1.11946 0.91405 0.93025 1.25630 0.95420 0.95656 1.01661 1.70053 1.37990 1.24248 1.23687 0.85639 0.79046 0.78251 0.79216 1.20658 1.21014 1.18896 1.60803 1.33409 1.31828 1.05502 1.21570 0.92872 0.94646 0.92993 0.94581 1.21717 0.99081 1.01419 0.96088 1.21216 0.94325 1.01955 0.95015 1.21379 0.94926 0.89048 0.95512 1.67584 1.08045 1.40320 1.02828 1.23220 0.93455 0.94457 0.94727 1.22445 1.01419 0.94245 1.00220 1.21827 0.93934 1.02325 0.91790 1.22003 1.02613 0.92688 0.95827 1.98334 1.80512 1.70162 1.53310 0.96174 0.93120 0.95665 0.93227 0.84161 0.90904 0.93674 0.91894 0.89092 0.87957 0.80959 0.80975 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 9.14 71.98 0.66 -5.17 16 2 C 0.23 12.22 2.44 44.17 0.11 12.33 16 3 H -0.04 -2.46 7.52 -2.39 -0.02 -2.48 16 4 C -0.51 -28.64 8.59 25.60 0.22 -28.42 16 5 H 0.05 2.89 7.60 -2.91 -0.02 2.87 16 6 C 0.01 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -53.70 11.39 21.45 0.24 -53.45 16 8 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.68 -30.11 6.03 -473.31 -2.85 -32.96 16 13 C 0.09 3.28 2.54 44.92 0.11 3.39 16 14 H 0.04 1.49 7.26 -2.39 -0.02 1.47 16 15 C -0.13 -3.74 9.52 71.98 0.69 -3.06 16 16 C -0.09 -2.69 4.41 29.85 0.13 -2.56 16 17 C 0.13 4.46 5.74 42.57 0.24 4.71 16 18 N -0.48 -17.39 9.37 -183.79 -1.72 -19.11 16 19 C 0.10 3.12 11.18 84.69 0.95 4.06 16 20 C -0.16 -4.37 10.11 22.36 0.23 -4.14 16 21 C -0.07 -1.99 9.98 22.49 0.22 -1.77 16 22 C -0.10 -3.21 6.34 22.42 0.14 -3.07 16 23 Cl -0.05 -1.42 27.33 -2.72 -0.07 -1.49 16 24 H 0.02 0.93 8.01 -2.39 -0.02 0.91 16 25 H 0.05 2.87 6.26 -2.38 -0.01 2.85 16 26 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 28 H 0.34 15.20 6.53 -89.70 -0.59 14.62 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 2.73 8.11 -2.38 -0.02 2.71 16 33 H 0.10 2.71 6.89 -2.39 -0.02 2.69 16 34 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 35 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -64.16 313.48 2.26 -61.90 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.49 Total: 21.65 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.15 Total: -22.42 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -4.33 Total: -105.53 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.07 Total: -1.49 kcal Total: -64.16 2.26 -61.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309767788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.344 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds