Wall clock time and date at job start Mon Mar 30 2020 07:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29025 * 124.91168 * 2 1 4 4 C 1.31784 * 117.12258 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74936 * 179.72958 * 4 3 2 6 6 C 1.33641 * 114.49889 * 0.02562 * 4 3 2 7 7 C 1.50700 * 126.03597 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 4 9 9 N 1.46893 * 109.47226 * 179.97438 * 8 7 6 10 10 C 1.46898 * 111.00181 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.46889 * 34.99509 * 10 9 8 12 12 C 1.53002 * 109.46998 * 275.00046 * 10 9 8 13 13 C 1.53000 * 109.47339 * 154.99972 * 10 9 8 14 14 C 1.50701 * 109.47054 * 294.99882 * 13 10 9 15 15 H 1.08003 * 119.99882 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00209 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00359 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99856 * 359.97438 * 16 14 13 19 19 H 1.48510 * 109.46957 * 90.00259 * 18 16 14 20 20 H 1.48495 * 109.47357 * 209.99936 * 18 16 14 21 21 H 1.48501 * 109.47235 * 330.00458 * 18 16 14 22 22 S 1.70968 * 124.91810 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46775 * 89.97735 * 1 2 3 24 24 H 1.08990 * 109.46971 * 209.97264 * 1 2 3 25 25 H 1.09001 * 109.47018 * 329.97865 * 1 2 3 26 26 H 1.08994 * 109.47218 * 90.03005 * 5 4 3 27 27 H 1.09007 * 109.46702 * 210.02827 * 5 4 3 28 28 H 1.08999 * 109.46968 * 330.02330 * 5 4 3 29 29 H 1.09000 * 109.46916 * 209.99905 * 7 6 4 30 30 H 1.08999 * 109.47044 * 329.99869 * 7 6 4 31 31 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 32 32 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 33 33 H 1.00906 * 111.00135 * 303.95174 * 9 8 7 34 34 H 1.09003 * 109.47092 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.46988 * 300.00018 * 12 10 9 36 36 H 1.08993 * 109.47240 * 59.99775 * 12 10 9 37 37 H 1.09000 * 109.47199 * 55.00025 * 13 10 9 38 38 H 1.08998 * 109.46983 * 175.00272 * 13 10 9 39 39 H 0.97005 * 120.00333 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 -0.0054 6 6 3.9354 -0.4005 0.0004 7 6 5.3575 -0.8993 0.0004 8 6 5.8388 -1.0682 1.4430 9 7 7.2247 -1.5549 1.4430 10 6 7.7213 -1.7298 2.8143 11 1 6.9073 -2.0688 3.4550 12 6 8.2591 -0.3958 3.3360 13 6 8.8433 -2.7700 2.8217 14 6 8.2860 -4.1128 2.4253 15 1 7.2366 -4.2141 2.1910 16 6 9.1158 -5.2121 2.3616 17 7 8.6295 -6.3839 2.0151 18 14 10.9310 -5.0367 2.7661 19 1 11.1399 -5.2736 4.2172 20 1 11.7105 -6.0305 1.9851 21 1 11.3857 -3.6666 2.4177 22 16 2.4857 -1.4019 0.0006 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.7675 2.3055 1.0208 27 1 5.4429 1.7199 -0.5185 28 1 4.0901 2.8769 -0.5230 29 1 5.4058 -1.8593 -0.5135 30 1 5.9949 -0.1797 -0.5134 31 1 5.7904 -0.1081 1.9567 32 1 5.2013 -1.7878 1.9567 33 1 7.3070 -2.4120 0.9169 34 1 8.6280 -0.5257 4.3535 35 1 9.0731 -0.0567 2.6953 36 1 7.4598 0.3452 3.3308 37 1 9.6174 -2.4744 2.1136 38 1 9.2715 -2.8353 3.8219 39 1 9.2133 -7.1573 1.9706 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309805640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:07 Heat of formation + Delta-G solvation = 17.232792 kcal Electronic energy + Delta-G solvation = -17911.449824 eV Core-core repulsion = 15172.820374 eV Total energy + Delta-G solvation = -2738.629450 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98637 -37.02764 -34.42544 -32.70010 -31.71889 -29.50509 -28.97603 -27.88028 -25.61907 -23.01984 -22.69746 -21.62903 -19.54808 -18.63169 -17.94310 -16.83777 -15.47748 -15.24375 -15.13363 -14.57153 -14.22867 -13.68245 -13.50047 -13.47719 -13.24662 -12.69910 -12.64246 -12.49640 -12.17203 -12.10423 -11.93909 -11.68466 -11.50210 -11.39980 -11.03450 -10.93680 -10.59225 -10.39928 -9.77490 -9.65286 -9.49243 -9.26574 -9.18320 -8.58784 -8.54873 -7.76533 -6.09462 -4.08228 0.68080 1.31961 1.74857 2.73546 3.29015 3.36981 3.41623 4.00133 4.42177 4.62707 4.86475 5.05300 5.17230 5.20593 5.22121 5.30651 5.36270 5.45559 5.57729 5.61574 5.75473 5.78316 5.82983 5.89719 6.04253 6.14171 6.20999 6.25118 6.34269 6.44391 6.69243 6.77076 7.13377 7.27855 7.72042 7.72993 7.84997 8.17544 8.45272 8.92043 9.53258 11.03454 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027751 B = 0.003933 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.742819 B = 7117.294640 C = 7814.640623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.033 3.967 3 N -0.472 5.472 4 C 0.057 3.943 5 C -0.076 4.076 6 C -0.206 4.206 7 C -0.042 4.042 8 C 0.068 3.932 9 N -0.684 5.684 10 C 0.097 3.903 11 H 0.034 0.966 12 C -0.138 4.138 13 C -0.017 4.017 14 C -0.525 4.525 15 H 0.069 0.931 16 C 0.069 3.931 17 N -0.901 5.901 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.264 1.264 22 S 0.120 5.880 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.358 0.642 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.026 0.974 38 H 0.017 0.983 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 13.641 -4.316 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.245 4.245 3 N -0.187 5.187 4 C -0.074 4.074 5 C -0.135 4.135 6 C -0.328 4.328 7 C -0.082 4.082 8 C -0.063 4.063 9 N -0.318 5.318 10 C -0.013 4.013 11 H 0.052 0.948 12 C -0.196 4.196 13 C -0.054 4.054 14 C -0.563 4.563 15 H 0.087 0.913 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.188 1.188 22 S 0.375 5.625 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.179 0.821 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.035 0.965 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.435 13.497 -4.420 18.877 hybrid contribution 0.936 -0.304 0.529 1.117 sum -11.499 13.193 -3.892 17.929 Atomic orbital electron populations 1.20396 0.85407 1.04014 1.03645 1.26867 1.01565 0.91426 1.04624 1.66118 1.04585 1.31802 1.16207 1.20141 0.90067 0.94139 1.03056 1.20351 0.95919 0.94317 1.02956 1.25739 1.00103 0.95421 1.11508 1.20084 0.87367 1.02106 0.98652 1.21874 0.90268 0.99901 0.94215 1.60575 1.17805 1.38154 1.15259 1.21380 0.97454 0.94451 0.88011 0.94764 1.21829 1.00471 0.97445 0.99840 1.19769 0.94605 0.94225 0.96844 1.21077 0.96986 0.91465 1.46749 0.91324 1.25006 0.98684 0.95133 0.94404 1.69915 1.35961 0.99828 1.48302 0.86759 0.85546 0.78340 0.78527 1.20405 1.21440 1.18816 1.84129 0.97738 1.12017 1.68577 0.89824 0.90204 0.89524 0.90730 0.90344 0.91038 0.90464 0.88853 0.91622 0.95635 0.82094 0.93313 0.92596 0.94130 0.95572 0.96503 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.46 36.01 0.38 -0.22 16 2 C 0.03 0.39 7.39 -13.45 -0.10 0.30 16 3 N -0.47 -6.52 10.53 -8.06 -0.08 -6.60 16 4 C 0.06 0.77 6.74 -84.22 -0.57 0.20 16 5 C -0.08 -0.83 10.06 36.01 0.36 -0.47 16 6 C -0.21 -2.79 5.84 -35.92 -0.21 -3.00 16 7 C -0.04 -0.58 5.69 -27.88 -0.16 -0.73 16 8 C 0.07 1.07 5.47 -3.82 -0.02 1.05 16 9 N -0.68 -12.59 6.31 -106.73 -0.67 -13.26 16 10 C 0.10 1.92 2.59 -67.71 -0.18 1.74 16 11 H 0.03 0.72 7.80 -51.93 -0.40 0.31 16 12 C -0.14 -2.31 9.41 37.16 0.35 -1.96 16 13 C -0.02 -0.39 3.64 -27.88 -0.10 -0.49 16 14 C -0.52 -14.40 8.67 -34.44 -0.30 -14.70 16 15 H 0.07 2.02 7.73 -52.48 -0.41 1.61 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 18 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 22 S 0.12 1.48 23.18 -107.50 -2.49 -1.01 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.78 6.71 -51.92 -0.35 0.43 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.19 6.75 -51.93 -0.35 0.84 16 31 H 0.07 1.00 7.44 -51.93 -0.39 0.61 16 32 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 33 H 0.36 7.29 7.21 -39.29 -0.28 7.01 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 37 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 38 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -30.51 331.01 -9.10 -39.61 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.30 Total: 2.32 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.64 Total: -16.40 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.02 Total: -46.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.49 Total: -1.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.51 -9.10 -39.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309805640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.839 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds