Wall clock time and date at job start Mon Mar 30 2020 07:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29025 * 124.91168 * 2 1 4 4 C 1.31784 * 117.12258 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74936 * 179.72958 * 4 3 2 6 6 C 1.33641 * 114.49889 * 0.02562 * 4 3 2 7 7 C 1.50700 * 126.03597 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 4 9 9 N 1.46893 * 109.47226 * 179.97438 * 8 7 6 10 10 C 1.46898 * 111.00181 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.46889 * 34.99509 * 10 9 8 12 12 C 1.53002 * 109.46998 * 275.00046 * 10 9 8 13 13 C 1.53000 * 109.47339 * 154.99972 * 10 9 8 14 14 C 1.50701 * 109.47054 * 294.99882 * 13 10 9 15 15 H 1.08003 * 119.99882 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00209 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00359 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99856 * 359.97438 * 16 14 13 19 19 H 1.48510 * 109.46957 * 90.00259 * 18 16 14 20 20 H 1.48495 * 109.47357 * 209.99936 * 18 16 14 21 21 H 1.48501 * 109.47235 * 330.00458 * 18 16 14 22 22 S 1.70968 * 124.91810 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46775 * 89.97735 * 1 2 3 24 24 H 1.08990 * 109.46971 * 209.97264 * 1 2 3 25 25 H 1.09001 * 109.47018 * 329.97865 * 1 2 3 26 26 H 1.08994 * 109.47218 * 90.03005 * 5 4 3 27 27 H 1.09007 * 109.46702 * 210.02827 * 5 4 3 28 28 H 1.08999 * 109.46968 * 330.02330 * 5 4 3 29 29 H 1.09000 * 109.46916 * 209.99905 * 7 6 4 30 30 H 1.08999 * 109.47044 * 329.99869 * 7 6 4 31 31 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 32 32 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 33 33 H 1.00906 * 111.00135 * 303.95174 * 9 8 7 34 34 H 1.09003 * 109.47092 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.46988 * 300.00018 * 12 10 9 36 36 H 1.08993 * 109.47240 * 59.99775 * 12 10 9 37 37 H 1.09000 * 109.47199 * 55.00025 * 13 10 9 38 38 H 1.08998 * 109.46983 * 175.00272 * 13 10 9 39 39 H 0.97005 * 120.00333 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 -0.0054 6 6 3.9354 -0.4005 0.0004 7 6 5.3575 -0.8993 0.0004 8 6 5.8388 -1.0682 1.4430 9 7 7.2247 -1.5549 1.4430 10 6 7.7213 -1.7298 2.8143 11 1 6.9073 -2.0688 3.4550 12 6 8.2591 -0.3958 3.3360 13 6 8.8433 -2.7700 2.8217 14 6 8.2860 -4.1128 2.4253 15 1 7.2366 -4.2141 2.1910 16 6 9.1158 -5.2121 2.3616 17 7 8.6295 -6.3839 2.0151 18 14 10.9310 -5.0367 2.7661 19 1 11.1399 -5.2736 4.2172 20 1 11.7105 -6.0305 1.9851 21 1 11.3857 -3.6666 2.4177 22 16 2.4857 -1.4019 0.0006 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.7675 2.3055 1.0208 27 1 5.4429 1.7199 -0.5185 28 1 4.0901 2.8769 -0.5230 29 1 5.4058 -1.8593 -0.5135 30 1 5.9949 -0.1797 -0.5134 31 1 5.7904 -0.1081 1.9567 32 1 5.2013 -1.7878 1.9567 33 1 7.3070 -2.4120 0.9169 34 1 8.6280 -0.5257 4.3535 35 1 9.0731 -0.0567 2.6953 36 1 7.4598 0.3452 3.3308 37 1 9.6174 -2.4744 2.1136 38 1 9.2715 -2.8353 3.8219 39 1 9.2133 -7.1573 1.9706 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309805640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:07 Heat of formation + Delta-G solvation = -2.249306 kcal Electronic energy + Delta-G solvation = -17912.294631 eV Core-core repulsion = 15172.820374 eV Total energy + Delta-G solvation = -2739.474257 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96525 -38.52785 -35.71095 -34.52861 -33.02799 -30.66553 -29.99957 -29.55691 -26.77767 -24.69659 -23.71568 -22.97186 -21.14647 -19.68148 -18.98897 -18.88908 -16.77764 -16.61301 -16.36410 -16.08093 -15.64563 -14.95906 -14.63804 -14.48259 -14.39379 -14.13234 -13.90451 -13.60075 -13.50227 -13.30949 -13.17781 -12.99568 -12.69324 -12.63175 -12.48181 -12.35516 -12.17726 -11.82691 -11.67805 -11.30162 -11.21948 -10.76393 -10.63445 -10.22878 -9.53045 -9.28272 -8.28478 -6.32031 -0.29610 0.36112 0.77590 1.37149 1.39551 1.51473 1.75174 2.37331 3.04515 3.14726 3.34864 3.96128 4.01860 4.12063 4.17602 4.24205 4.35179 4.54321 4.55853 4.61817 4.64752 4.68697 4.76328 4.79005 4.90264 4.95067 5.05262 5.10063 5.12108 5.12399 5.22788 5.35623 5.41211 5.50546 5.67822 6.22825 6.31607 6.54414 6.74261 6.74672 7.32744 8.87601 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027751 B = 0.003933 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.742819 B = 7117.294640 C = 7814.640623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 N -0.497 5.497 4 C 0.055 3.945 5 C -0.076 4.076 6 C -0.229 4.229 7 C -0.030 4.030 8 C 0.075 3.925 9 N -0.680 5.680 10 C 0.097 3.903 11 H 0.016 0.984 12 C -0.129 4.129 13 C -0.013 4.013 14 C -0.526 4.526 15 H 0.032 0.968 16 C 0.009 3.991 17 N -0.949 5.949 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.246 1.246 22 S 0.108 5.892 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.005 0.995 33 H 0.343 0.657 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 15.622 -4.072 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.235 4.235 3 N -0.213 5.213 4 C -0.076 4.076 5 C -0.135 4.135 6 C -0.350 4.350 7 C -0.070 4.070 8 C -0.055 4.055 9 N -0.312 5.312 10 C -0.013 4.013 11 H 0.035 0.965 12 C -0.187 4.187 13 C -0.050 4.050 14 C -0.564 4.564 15 H 0.050 0.950 16 C -0.189 4.189 17 N -0.590 5.590 18 Si 0.773 3.227 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.169 1.169 22 S 0.364 5.636 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.023 0.977 33 H 0.162 0.838 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.026 15.507 -4.168 20.062 hybrid contribution 0.637 -0.925 0.435 1.205 sum -11.389 14.582 -3.732 18.875 Atomic orbital electron populations 1.20614 0.82640 1.05221 1.05150 1.27593 1.03105 0.90574 1.02205 1.66219 1.04890 1.32436 1.17793 1.20543 0.90518 0.94687 1.01888 1.20434 0.95758 0.93779 1.03535 1.25674 1.00002 0.95791 1.13567 1.19910 0.88051 1.02004 0.97051 1.21864 0.88420 0.99506 0.95744 1.60676 1.19415 1.36932 1.14177 1.21351 0.95898 0.95442 0.88623 0.96547 1.21736 1.01090 0.95552 1.00283 1.19715 0.95640 0.92943 0.96723 1.21350 0.95497 0.93637 1.45878 0.94982 1.25937 1.03804 0.94678 0.94442 1.70065 1.37864 1.00859 1.50188 0.85677 0.79387 0.79102 0.78551 1.19530 1.21273 1.16936 1.84152 0.97958 1.12648 1.68858 0.88020 0.88492 0.88750 0.90141 0.89453 0.90314 0.91473 0.87595 0.90431 0.97687 0.83823 0.92220 0.92104 0.92321 0.95439 0.95967 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.46 71.24 0.75 -0.31 16 2 C 0.04 0.98 7.39 88.52 0.65 1.63 16 3 N -0.50 -13.15 10.53 -179.40 -1.89 -15.04 16 4 C 0.05 1.41 6.74 41.52 0.28 1.69 16 5 C -0.08 -1.53 10.06 71.24 0.72 -0.81 16 6 C -0.23 -6.10 5.84 24.64 0.14 -5.95 16 7 C -0.03 -0.82 5.69 29.85 0.17 -0.65 16 8 C 0.07 2.35 5.47 86.31 0.47 2.82 16 9 N -0.68 -24.89 6.31 -491.59 -3.10 -27.99 16 10 C 0.10 3.77 2.59 44.92 0.12 3.88 16 11 H 0.02 0.69 7.80 -2.39 -0.02 0.68 16 12 C -0.13 -3.97 9.41 71.98 0.68 -3.29 16 13 C -0.01 -0.58 3.64 29.85 0.11 -0.47 16 14 C -0.53 -29.40 8.67 25.60 0.22 -29.18 16 15 H 0.03 1.97 7.73 -2.91 -0.02 1.95 16 16 C 0.01 0.49 5.47 84.65 0.46 0.95 16 17 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 18 Si 0.95 43.91 27.47 68.60 1.88 45.79 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 22 S 0.11 2.65 23.18 -56.49 -1.31 1.34 16 23 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.58 6.71 -2.38 -0.02 1.56 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.11 2.58 6.75 -2.39 -0.02 2.56 16 31 H 0.08 2.25 7.44 -2.39 -0.02 2.24 16 32 H 0.00 0.17 8.05 -2.39 -0.02 0.15 16 33 H 0.34 14.32 7.21 -89.69 -0.65 13.67 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16 37 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 38 H 0.02 0.99 7.57 -2.39 -0.02 0.98 16 39 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -65.92 331.01 0.98 -64.94 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.33 Total: 19.10 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 4.77 Total: -29.69 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -4.69 Total: -101.48 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.31 Total: 1.34 kcal Total: -65.92 0.98 -64.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309805640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.688 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds