Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00081 * 2 1 4 4 C 1.46898 * 111.00207 * 123.95683 * 2 1 3 5 5 H 1.09001 * 109.47287 * 37.74404 * 4 2 1 6 6 C 1.53005 * 109.46832 * 277.75100 * 4 2 1 7 7 N 1.46494 * 109.47418 * 65.67530 * 6 4 2 8 8 C 1.36938 * 119.99759 * 187.67771 * 7 6 4 9 9 H 1.08004 * 120.00250 * 359.97438 * 8 7 6 10 10 C 1.38816 * 119.99953 * 180.02562 * 8 7 6 11 11 N 1.31620 * 119.99886 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00223 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46841 * 60.00280 * 12 10 8 14 14 H 1.48500 * 109.47117 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47302 * 300.00624 * 12 10 8 16 16 C 1.50695 * 109.47576 * 157.74547 * 4 2 1 17 17 C 1.38244 * 120.00339 * 15.18161 * 16 4 2 18 18 C 1.38219 * 120.00850 * 179.72299 * 17 16 4 19 19 C 1.38260 * 120.02936 * 0.50597 * 18 17 16 20 20 C 1.38194 * 120.01150 * 359.49438 * 19 18 17 21 21 C 1.38327 * 120.00935 * 195.15265 * 16 4 2 22 22 Cl 1.73598 * 120.01310 * 0.02562 * 21 16 4 23 23 H 1.08999 * 109.46773 * 309.56016 * 1 2 3 24 24 H 1.08999 * 109.47069 * 69.56717 * 1 2 3 25 25 H 1.08998 * 109.46919 * 189.56245 * 1 2 3 26 26 H 1.09003 * 109.47439 * 175.65815 * 3 2 1 27 27 H 1.09003 * 109.46966 * 295.65972 * 3 2 1 28 28 H 1.09000 * 109.47226 * 55.65397 * 3 2 1 29 29 H 1.08995 * 109.46852 * 185.68089 * 6 4 2 30 30 H 1.09001 * 109.46568 * 305.67146 * 6 4 2 31 31 H 0.96998 * 120.00290 * 7.68157 * 7 6 4 32 32 H 0.96997 * 120.00390 * 179.97438 * 11 10 8 33 33 H 1.07998 * 119.99382 * 359.97438 * 17 16 4 34 34 H 1.08006 * 119.98183 * 180.27330 * 18 17 16 35 35 H 1.08001 * 119.99127 * 179.76503 * 19 18 17 36 36 H 1.07998 * 120.00145 * 180.23420 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.3671 -1.6400 1.3091 6 6 1.9966 0.1147 2.3886 7 7 0.6167 0.4358 2.7611 8 6 0.3697 1.3419 3.7577 9 1 1.1923 1.8195 4.2694 10 6 -0.9378 1.6458 4.1111 11 7 -1.9402 1.0627 3.4885 12 14 -1.2748 2.8812 5.4710 13 1 -0.6882 4.1948 5.1029 14 1 -2.7411 3.0284 5.6539 15 1 -0.6630 2.4032 6.7368 16 6 3.4031 -1.2111 0.8351 17 6 4.1021 -0.6324 -0.2078 18 6 5.3953 -1.0365 -0.4816 19 6 5.9867 -2.0269 0.2806 20 6 5.2889 -2.6061 1.3233 21 6 3.9963 -2.1983 1.6014 22 17 3.1191 -2.9253 2.9112 23 1 -0.3633 0.6545 0.7923 24 1 -0.3633 0.3588 -0.9630 25 1 -0.3633 -1.0134 0.1707 26 1 3.0823 1.3434 0.0778 27 1 1.7102 1.8700 -0.9263 28 1 1.5844 1.9184 0.8485 29 1 2.4795 -0.4183 3.2077 30 1 2.5416 1.0362 2.1837 31 1 -0.1220 0.0067 2.3018 32 1 -2.8539 1.2747 3.7356 33 1 3.6392 0.1384 -0.8061 34 1 5.9425 -0.5810 -1.2937 35 1 6.9958 -2.3448 0.0636 36 1 5.7525 -3.3770 1.9210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309969702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = 56.312192 kcal Electronic energy + Delta-G solvation = -18768.068114 eV Core-core repulsion = 15893.256473 eV Total energy + Delta-G solvation = -2874.811641 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81627 -37.51143 -36.20141 -33.85300 -31.85603 -30.84995 -30.49533 -27.42205 -27.25233 -24.50440 -22.75434 -22.09053 -21.91711 -19.75318 -17.42370 -16.70583 -15.92097 -15.49376 -14.88262 -14.61320 -14.20954 -14.17924 -13.72674 -13.45389 -13.01087 -12.71454 -12.42281 -12.15198 -11.77832 -11.45836 -11.35680 -11.21690 -11.07981 -10.98483 -10.87189 -10.80133 -10.66870 -10.28203 -10.14648 -9.67937 -8.90963 -8.72778 -8.50799 -7.78364 -6.90801 -5.79339 -3.07660 1.26716 1.39298 2.37073 3.42639 3.47329 3.48101 3.73645 4.36280 4.56214 4.85301 4.97939 5.05025 5.35148 5.47565 5.54157 5.59358 5.64901 5.74768 5.84284 6.03160 6.07231 6.08288 6.16349 6.28285 6.36093 6.44963 6.51863 6.54446 6.67175 6.74804 6.80057 6.91872 7.48399 7.51821 7.68093 8.39563 9.50756 10.05878 10.41602 11.43342 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.005920 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.018035 B = 4728.979482 C = 5264.957634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.533 5.533 3 C 0.005 3.995 4 C 0.106 3.894 5 H 0.093 0.907 6 C 0.127 3.873 7 N -0.729 5.729 8 C -0.239 4.239 9 H 0.068 0.932 10 C -0.011 4.011 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.049 4.049 17 C -0.097 4.097 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.035 4.035 22 Cl -0.063 7.063 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.031 0.969 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.416 -5.723 -8.587 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.256 5.256 3 C -0.143 4.143 4 C -0.003 4.003 5 H 0.111 0.889 6 C -0.001 4.001 7 N -0.377 5.377 8 C -0.370 4.370 9 H 0.086 0.914 10 C -0.207 4.207 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.050 4.050 17 C -0.115 4.115 18 C -0.140 4.140 19 C -0.138 4.138 20 C -0.134 4.134 21 C -0.062 4.062 22 Cl -0.034 7.034 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.223 0.777 32 H 0.066 0.934 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.471 -5.896 -8.768 17.121 hybrid contribution -0.788 0.788 1.525 1.889 sum 12.682 -5.109 -7.243 15.473 Atomic orbital electron populations 1.22672 0.86424 1.02574 1.02209 1.62309 1.08936 1.13696 1.40687 1.22703 1.00039 0.89885 1.01704 1.20881 0.91362 0.97642 0.90439 0.88882 1.21325 0.89398 0.96045 0.93358 1.42622 1.00780 1.51045 1.43205 1.19164 0.91737 1.15700 1.10449 0.91388 1.24702 0.95508 1.00501 1.00015 1.69631 0.98178 1.46219 1.44170 0.86270 0.76835 0.81117 0.81980 1.21328 1.21678 1.21310 1.19723 0.96276 0.94417 0.94632 1.21432 0.93597 0.99884 0.96623 1.21259 0.95496 0.97508 0.99786 1.21026 0.99846 0.97284 0.95687 1.20955 0.92770 1.00960 0.98695 1.20842 0.93818 0.98250 0.93255 1.98390 1.75922 1.82056 1.47000 0.90735 0.92393 0.92225 0.91526 0.92226 0.92683 0.95624 0.95076 0.77667 0.93424 0.83416 0.85841 0.85708 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.58 60.07 0.52 0.68 16 2 N -0.53 -9.01 4.26 -244.59 -1.04 -10.05 16 3 C 0.00 0.07 7.28 60.06 0.44 0.51 16 4 C 0.11 1.88 1.69 -68.87 -0.12 1.76 16 5 H 0.09 1.77 7.07 -51.93 -0.37 1.40 16 6 C 0.13 2.65 4.87 -4.04 -0.02 2.63 16 7 N -0.73 -18.20 4.39 -59.91 -0.26 -18.46 16 8 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 9 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 12 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 C -0.05 -0.76 5.10 -104.59 -0.53 -1.29 16 17 C -0.10 -1.32 8.26 -39.59 -0.33 -1.64 16 18 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 19 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 20 C -0.12 -1.41 9.83 -39.55 -0.39 -1.80 16 21 C -0.03 -0.51 6.21 -39.50 -0.25 -0.76 16 22 Cl -0.06 -0.99 26.26 -51.86 -1.36 -2.35 16 23 H 0.07 1.63 5.57 -51.93 -0.29 1.34 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 26 H 0.07 0.96 5.27 -51.93 -0.27 0.69 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 1.06 6.43 -51.93 -0.33 0.73 16 29 H 0.03 0.56 6.66 -51.93 -0.35 0.22 16 30 H 0.03 0.66 6.11 -51.93 -0.32 0.34 16 31 H 0.39 9.98 5.02 -40.82 -0.20 9.78 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.15 1.93 4.90 -52.49 -0.26 1.68 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -29.52 297.59 -8.65 -38.17 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -4.45 Total: 8.35 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.72 Total: -10.58 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.58 Total: -55.46 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.36 Total: -2.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.52 -8.65 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309969702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.484 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds