Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00081 * 2 1 4 4 C 1.46898 * 111.00207 * 123.95683 * 2 1 3 5 5 H 1.09001 * 109.47287 * 37.74404 * 4 2 1 6 6 C 1.53005 * 109.46832 * 277.75100 * 4 2 1 7 7 N 1.46494 * 109.47418 * 65.67530 * 6 4 2 8 8 C 1.36938 * 119.99759 * 187.67771 * 7 6 4 9 9 H 1.08004 * 120.00250 * 359.97438 * 8 7 6 10 10 C 1.38816 * 119.99953 * 180.02562 * 8 7 6 11 11 N 1.31620 * 119.99886 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00223 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46841 * 60.00280 * 12 10 8 14 14 H 1.48500 * 109.47117 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47302 * 300.00624 * 12 10 8 16 16 C 1.50695 * 109.47576 * 157.74547 * 4 2 1 17 17 C 1.38244 * 120.00339 * 15.18161 * 16 4 2 18 18 C 1.38219 * 120.00850 * 179.72299 * 17 16 4 19 19 C 1.38260 * 120.02936 * 0.50597 * 18 17 16 20 20 C 1.38194 * 120.01150 * 359.49438 * 19 18 17 21 21 C 1.38327 * 120.00935 * 195.15265 * 16 4 2 22 22 Cl 1.73598 * 120.01310 * 0.02562 * 21 16 4 23 23 H 1.08999 * 109.46773 * 309.56016 * 1 2 3 24 24 H 1.08999 * 109.47069 * 69.56717 * 1 2 3 25 25 H 1.08998 * 109.46919 * 189.56245 * 1 2 3 26 26 H 1.09003 * 109.47439 * 175.65815 * 3 2 1 27 27 H 1.09003 * 109.46966 * 295.65972 * 3 2 1 28 28 H 1.09000 * 109.47226 * 55.65397 * 3 2 1 29 29 H 1.08995 * 109.46852 * 185.68089 * 6 4 2 30 30 H 1.09001 * 109.46568 * 305.67146 * 6 4 2 31 31 H 0.96998 * 120.00290 * 7.68157 * 7 6 4 32 32 H 0.96997 * 120.00390 * 179.97438 * 11 10 8 33 33 H 1.07998 * 119.99382 * 359.97438 * 17 16 4 34 34 H 1.08006 * 119.98183 * 180.27330 * 18 17 16 35 35 H 1.08001 * 119.99127 * 179.76503 * 19 18 17 36 36 H 1.07998 * 120.00145 * 180.23420 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.3671 -1.6400 1.3091 6 6 1.9966 0.1147 2.3886 7 7 0.6167 0.4358 2.7611 8 6 0.3697 1.3419 3.7577 9 1 1.1923 1.8195 4.2694 10 6 -0.9378 1.6458 4.1111 11 7 -1.9402 1.0627 3.4885 12 14 -1.2748 2.8812 5.4710 13 1 -0.6882 4.1948 5.1029 14 1 -2.7411 3.0284 5.6539 15 1 -0.6630 2.4032 6.7368 16 6 3.4031 -1.2111 0.8351 17 6 4.1021 -0.6324 -0.2078 18 6 5.3953 -1.0365 -0.4816 19 6 5.9867 -2.0269 0.2806 20 6 5.2889 -2.6061 1.3233 21 6 3.9963 -2.1983 1.6014 22 17 3.1191 -2.9253 2.9112 23 1 -0.3633 0.6545 0.7923 24 1 -0.3633 0.3588 -0.9630 25 1 -0.3633 -1.0134 0.1707 26 1 3.0823 1.3434 0.0778 27 1 1.7102 1.8700 -0.9263 28 1 1.5844 1.9184 0.8485 29 1 2.4795 -0.4183 3.2077 30 1 2.5416 1.0362 2.1837 31 1 -0.1220 0.0067 2.3018 32 1 -2.8539 1.2747 3.7356 33 1 3.6392 0.1384 -0.8061 34 1 5.9425 -0.5810 -1.2937 35 1 6.9958 -2.3448 0.0636 36 1 5.7525 -3.3770 1.9210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309969702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = 38.190619 kcal Electronic energy + Delta-G solvation = -18768.853925 eV Core-core repulsion = 15893.256473 eV Total energy + Delta-G solvation = -2875.597451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.00278 -38.81147 -37.33657 -35.78553 -33.28940 -32.45930 -31.61946 -28.92079 -28.64710 -26.30984 -24.22378 -23.33565 -23.16580 -21.15290 -19.28568 -17.93788 -17.23121 -16.91539 -16.34738 -16.13713 -15.70555 -15.44366 -15.12243 -14.87696 -14.38379 -14.25249 -13.90609 -13.54636 -13.06678 -12.93520 -12.90982 -12.77458 -12.59161 -12.42053 -12.31642 -12.24953 -12.14711 -11.94808 -11.82462 -11.35002 -10.96601 -9.73792 -9.58309 -9.32750 -8.91165 -7.97035 -5.25478 0.26534 0.40937 1.26859 1.44294 1.46752 1.53007 2.52656 2.75233 3.00464 3.36854 3.61021 3.96662 4.12471 4.16360 4.21664 4.31112 4.37910 4.52324 4.58001 4.62285 4.71201 4.79125 4.89525 4.96250 5.00687 5.07264 5.18415 5.21715 5.37715 5.44917 5.51807 5.57057 5.97871 6.07302 6.09011 6.24349 7.31524 8.03253 8.30163 9.25622 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.005920 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.018035 B = 4728.979482 C = 5264.957634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.521 5.521 3 C 0.010 3.990 4 C 0.119 3.881 5 H 0.073 0.927 6 C 0.133 3.867 7 N -0.737 5.737 8 C -0.247 4.247 9 H 0.068 0.932 10 C -0.067 4.067 11 N -0.964 5.964 12 Si 0.971 3.029 13 H -0.278 1.278 14 H -0.293 1.293 15 H -0.282 1.282 16 C -0.074 4.074 17 C -0.105 4.105 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.052 4.052 22 Cl -0.084 7.084 23 H 0.034 0.966 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.030 0.970 31 H 0.380 0.620 32 H 0.252 0.748 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.982 -5.580 -9.850 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.243 5.243 3 C -0.137 4.137 4 C 0.010 3.990 5 H 0.091 0.909 6 C 0.005 3.995 7 N -0.383 5.383 8 C -0.378 4.378 9 H 0.086 0.914 10 C -0.260 4.260 11 N -0.614 5.614 12 Si 0.800 3.200 13 H -0.204 1.204 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.075 4.075 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.079 4.079 22 Cl -0.055 7.055 23 H 0.053 0.947 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.216 0.784 32 H 0.061 0.939 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 16.078 -5.755 -10.038 19.809 hybrid contribution -1.448 0.710 1.843 2.449 sum 14.630 -5.045 -8.195 17.511 Atomic orbital electron populations 1.22561 0.87288 1.01488 1.01842 1.62408 1.07991 1.14126 1.39805 1.22709 1.00998 0.88834 1.01198 1.20632 0.93095 0.96179 0.89140 0.90890 1.21376 0.87047 0.96374 0.94725 1.42754 1.02336 1.50495 1.42670 1.19490 0.91884 1.15774 1.10699 0.91432 1.25463 0.95374 1.02640 1.02479 1.69786 0.98176 1.47765 1.45685 0.85263 0.76317 0.79149 0.79316 1.20434 1.21915 1.20810 1.19574 0.95172 0.96167 0.96623 1.21534 0.94708 0.99997 0.96017 1.21653 0.94412 0.96929 1.00179 1.21499 1.01112 0.95921 0.94015 1.21270 0.91687 1.01274 0.99355 1.21045 0.94888 0.98830 0.93111 1.98379 1.76652 1.82386 1.48132 0.94725 0.90185 0.92534 0.89616 0.90044 0.96379 0.96501 0.95259 0.78429 0.93922 0.83195 0.82406 0.81918 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.58 127.69 1.10 1.71 16 2 N -0.52 -17.53 4.26 -927.74 -3.96 -21.48 16 3 C 0.01 0.33 7.28 127.69 0.93 1.26 16 4 C 0.12 4.29 1.69 44.17 0.07 4.36 16 5 H 0.07 2.90 7.07 -2.39 -0.02 2.88 16 6 C 0.13 5.69 4.87 86.38 0.42 6.11 16 7 N -0.74 -38.15 4.39 -343.45 -1.51 -39.65 16 8 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 9 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 10 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 11 N -0.96 -58.75 13.06 21.65 0.28 -58.47 16 12 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 16 C -0.07 -2.22 5.10 -19.84 -0.10 -2.33 16 17 C -0.10 -2.56 8.26 22.27 0.18 -2.38 16 18 C -0.11 -2.06 10.05 22.27 0.22 -1.84 16 19 C -0.11 -1.83 10.05 22.26 0.22 -1.61 16 20 C -0.12 -2.56 9.83 22.29 0.22 -2.34 16 21 C -0.05 -1.49 6.21 22.32 0.14 -1.35 16 22 Cl -0.08 -2.69 26.26 -2.72 -0.07 -2.76 16 23 H 0.03 1.58 5.57 -2.39 -0.01 1.56 16 24 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.06 2.07 7.72 -2.39 -0.02 2.05 16 26 H 0.09 2.35 5.27 -2.39 -0.01 2.34 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.02 0.70 6.43 -2.39 -0.02 0.68 16 29 H 0.02 0.77 6.66 -2.39 -0.02 0.75 16 30 H 0.03 1.27 6.11 -2.39 -0.01 1.26 16 31 H 0.38 20.57 5.02 -92.71 -0.47 20.11 16 32 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.15 3.52 4.90 -2.91 -0.01 3.51 16 34 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -65.23 297.59 2.12 -63.11 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.63 Total: 25.51 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.71 Total: -15.01 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -5.18 Total: -119.61 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 17 Polarization: -2.69 SS G_CDS: -0.07 Total: -2.76 kcal Total: -65.23 2.12 -63.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309969702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.300 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds