Wall clock time and date at job start Mon Mar 30 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00037 * 2 1 4 4 C 1.46900 * 111.00234 * 123.95872 * 2 1 3 5 5 H 1.09002 * 109.46777 * 290.26036 * 4 2 1 6 6 C 1.52995 * 109.47295 * 50.26481 * 4 2 1 7 7 N 1.46503 * 109.47075 * 54.05689 * 6 4 2 8 8 C 1.36939 * 119.99737 * 184.50712 * 7 6 4 9 9 H 1.08003 * 120.00206 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99772 * 180.02562 * 8 7 6 11 11 N 1.31619 * 119.99801 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99980 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47262 * 89.99727 * 12 10 8 14 14 H 1.48495 * 109.47193 * 209.99901 * 12 10 8 15 15 H 1.48503 * 109.47059 * 329.99912 * 12 10 8 16 16 C 1.50694 * 109.47183 * 170.26725 * 4 2 1 17 17 C 1.38240 * 120.01120 * 340.01688 * 16 4 2 18 18 C 1.38217 * 120.01652 * 179.97438 * 17 16 4 19 19 C 1.38260 * 120.03045 * 0.02562 * 18 17 16 20 20 C 1.38197 * 120.00788 * 0.02562 * 19 18 17 21 21 C 1.38332 * 120.00645 * 159.99734 * 16 4 2 22 22 Cl 1.73596 * 120.01420 * 0.02562 * 21 16 4 23 23 H 1.09004 * 109.46735 * 289.75249 * 1 2 3 24 24 H 1.09004 * 109.47292 * 49.75023 * 1 2 3 25 25 H 1.09002 * 109.47734 * 169.75722 * 1 2 3 26 26 H 1.09004 * 109.47037 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47101 * 299.99897 * 3 2 1 28 28 H 1.08997 * 109.47000 * 60.00438 * 3 2 1 29 29 H 1.09002 * 109.47447 * 174.05774 * 6 4 2 30 30 H 1.09008 * 109.46973 * 294.05757 * 6 4 2 31 31 H 0.96999 * 120.00198 * 4.50919 * 7 6 4 32 32 H 0.97002 * 119.99532 * 179.97438 * 11 10 8 33 33 H 1.08004 * 119.98626 * 0.02562 * 17 16 4 34 34 H 1.08005 * 119.98352 * 180.02562 * 18 17 16 35 35 H 1.07991 * 119.99509 * 180.27636 * 19 18 17 36 36 H 1.08002 * 120.00551 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.7934 -0.2271 2.0631 6 6 1.3174 -2.1367 1.1869 7 7 1.4686 -2.8033 -0.1089 8 6 0.8606 -4.0096 -0.3333 9 1 0.2693 -4.4694 0.4448 10 6 1.0043 -4.6415 -1.5609 11 7 1.7244 -4.0809 -2.5093 12 14 0.1743 -6.2867 -1.8673 13 1 -1.1841 -6.0600 -2.4228 14 1 0.9795 -7.0747 -2.8347 15 1 0.0678 -7.0332 -0.5880 16 6 3.4828 -0.9469 0.9760 17 6 4.0655 -0.8036 -0.2693 18 6 5.4298 -0.9689 -0.4174 19 6 6.2124 -1.2782 0.6795 20 6 5.6309 -1.4227 1.9248 21 6 4.2653 -1.2559 2.0741 22 17 3.5343 -1.4362 3.6383 23 1 -0.3633 0.3473 0.9673 24 1 -0.3634 0.6640 -0.7844 25 1 -0.3635 -1.0113 -0.1827 26 1 3.0851 1.3423 -0.0005 27 1 1.6459 1.8948 -0.8900 28 1 1.6460 1.8947 0.8900 29 1 1.7815 -2.7439 1.9642 30 1 0.2578 -2.0101 1.4090 31 1 1.9993 -2.3902 -0.8078 32 1 1.8251 -4.5226 -3.3670 33 1 3.4547 -0.5616 -1.1265 34 1 5.8846 -0.8564 -1.3906 35 1 7.2789 -1.4028 0.5640 36 1 6.2424 -1.6639 2.7818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309969703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:54 Heat of formation + Delta-G solvation = 45.865072 kcal Electronic energy + Delta-G solvation = -18940.241424 eV Core-core repulsion = 16064.976763 eV Total energy + Delta-G solvation = -2875.264662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.61021 -37.19417 -36.14549 -34.02955 -31.81619 -30.58552 -30.32110 -27.72132 -26.77137 -24.17549 -22.97886 -21.99345 -21.91654 -19.42949 -17.13322 -16.82959 -15.79385 -15.36975 -14.61738 -14.44591 -14.25288 -14.10881 -13.50977 -13.40093 -12.99326 -12.74260 -12.36598 -12.05516 -11.97565 -11.82205 -11.22657 -11.17152 -11.14121 -11.02911 -10.76691 -10.75539 -10.58296 -10.22417 -9.96194 -9.61129 -8.76847 -8.47635 -8.30375 -7.91110 -6.75776 -5.64274 -2.90467 1.49071 1.63917 2.42586 3.49285 3.54717 3.56091 3.97668 4.23733 4.69297 4.94785 5.15442 5.30385 5.44628 5.54144 5.57765 5.63255 5.68204 5.75739 5.82263 5.96053 5.97915 6.02467 6.09982 6.26347 6.44118 6.47643 6.55383 6.68283 6.71770 6.74466 6.86555 7.17373 7.46504 7.47745 7.79808 8.55018 9.67444 10.28111 10.67576 11.58149 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.007022 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.724695 B = 3986.539353 C = 4269.154122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.526 5.526 3 C 0.019 3.981 4 C 0.114 3.886 5 H 0.052 0.948 6 C 0.160 3.840 7 N -0.717 5.717 8 C -0.235 4.235 9 H 0.066 0.934 10 C -0.012 4.012 11 N -0.928 5.928 12 Si 0.902 3.098 13 H -0.292 1.292 14 H -0.293 1.293 15 H -0.284 1.284 16 C -0.051 4.051 17 C -0.072 4.072 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.033 4.033 22 Cl -0.080 7.080 23 H 0.016 0.984 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.018 0.982 29 H 0.025 0.975 30 H 0.023 0.977 31 H 0.393 0.607 32 H 0.252 0.748 33 H 0.147 0.853 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 10.994 7.744 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.250 5.250 3 C -0.130 4.130 4 C 0.005 3.995 5 H 0.070 0.930 6 C 0.032 3.968 7 N -0.363 5.363 8 C -0.367 4.367 9 H 0.084 0.916 10 C -0.208 4.208 11 N -0.577 5.577 12 Si 0.733 3.267 13 H -0.219 1.219 14 H -0.219 1.219 15 H -0.210 1.210 16 C -0.052 4.052 17 C -0.090 4.090 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.060 4.060 22 Cl -0.051 7.051 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.229 0.771 32 H 0.062 0.938 33 H 0.164 0.836 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.792 10.601 7.475 14.206 hybrid contribution -0.585 -0.547 0.446 0.916 sum 5.208 10.054 7.921 13.818 Atomic orbital electron populations 1.22407 0.86537 1.04218 0.98772 1.61761 1.08520 1.12214 1.42469 1.22503 1.00963 0.89426 1.00070 1.20872 0.90337 0.96553 0.91695 0.92989 1.20722 0.96228 0.88851 0.90982 1.42251 1.61305 1.21867 1.10881 1.19214 1.23867 0.96168 0.97419 0.91591 1.24668 1.00926 0.98728 0.96523 1.69678 1.44115 1.39181 1.04703 0.86265 0.78758 0.84207 0.77425 1.21930 1.21937 1.20966 1.19572 0.94917 0.98565 0.92133 1.21194 0.94339 0.96574 0.96934 1.21268 0.94199 0.99424 0.98682 1.20998 0.99785 1.00637 0.92187 1.20859 0.92560 1.01981 0.98310 1.20709 0.93194 1.05958 0.86095 1.98332 1.83569 1.96099 1.27093 0.96594 0.92101 0.89015 0.91378 0.91493 0.96354 0.95726 0.95885 0.77089 0.93780 0.83567 0.85742 0.85811 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 8.73 60.06 0.52 0.99 16 2 N -0.53 -8.88 3.28 -244.59 -0.80 -9.69 16 3 C 0.02 0.26 8.93 60.07 0.54 0.79 16 4 C 0.11 2.01 1.41 -68.87 -0.10 1.92 16 5 H 0.05 0.87 7.34 -51.93 -0.38 0.49 16 6 C 0.16 3.39 5.03 -4.04 -0.02 3.37 16 7 N -0.72 -18.29 4.80 -59.90 -0.29 -18.58 16 8 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 12 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 C -0.05 -0.88 4.13 -104.59 -0.43 -1.31 16 17 C -0.07 -1.24 6.89 -39.59 -0.27 -1.51 16 18 C -0.12 -1.76 10.05 -39.58 -0.40 -2.15 16 19 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 20 C -0.12 -1.71 9.83 -39.54 -0.39 -2.09 16 21 C -0.03 -0.53 6.30 -39.50 -0.25 -0.78 16 22 Cl -0.08 -1.21 26.66 -51.86 -1.38 -2.59 16 23 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 24 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 25 H 0.09 1.79 6.41 -51.93 -0.33 1.46 16 26 H 0.07 0.92 6.03 -51.93 -0.31 0.61 16 27 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.03 0.55 7.30 -51.93 -0.38 0.17 16 30 H 0.02 0.49 6.83 -51.92 -0.35 0.14 16 31 H 0.39 10.51 6.27 -40.82 -0.26 10.26 16 32 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.15 2.66 6.80 -52.48 -0.36 2.30 16 34 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -30.50 305.26 -8.48 -38.98 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.87 Total: 7.00 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.44 Total: -10.05 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.37 Total: -55.70 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.38 Total: -2.59 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.50 -8.48 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309969703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.845 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds