Wall clock time and date at job start Mon Mar 30 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00037 * 2 1 4 4 C 1.46900 * 111.00234 * 123.95872 * 2 1 3 5 5 H 1.09002 * 109.46777 * 290.26036 * 4 2 1 6 6 C 1.52995 * 109.47295 * 50.26481 * 4 2 1 7 7 N 1.46503 * 109.47075 * 54.05689 * 6 4 2 8 8 C 1.36939 * 119.99737 * 184.50712 * 7 6 4 9 9 H 1.08003 * 120.00206 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99772 * 180.02562 * 8 7 6 11 11 N 1.31619 * 119.99801 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99980 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47262 * 89.99727 * 12 10 8 14 14 H 1.48495 * 109.47193 * 209.99901 * 12 10 8 15 15 H 1.48503 * 109.47059 * 329.99912 * 12 10 8 16 16 C 1.50694 * 109.47183 * 170.26725 * 4 2 1 17 17 C 1.38240 * 120.01120 * 340.01688 * 16 4 2 18 18 C 1.38217 * 120.01652 * 179.97438 * 17 16 4 19 19 C 1.38260 * 120.03045 * 0.02562 * 18 17 16 20 20 C 1.38197 * 120.00788 * 0.02562 * 19 18 17 21 21 C 1.38332 * 120.00645 * 159.99734 * 16 4 2 22 22 Cl 1.73596 * 120.01420 * 0.02562 * 21 16 4 23 23 H 1.09004 * 109.46735 * 289.75249 * 1 2 3 24 24 H 1.09004 * 109.47292 * 49.75023 * 1 2 3 25 25 H 1.09002 * 109.47734 * 169.75722 * 1 2 3 26 26 H 1.09004 * 109.47037 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47101 * 299.99897 * 3 2 1 28 28 H 1.08997 * 109.47000 * 60.00438 * 3 2 1 29 29 H 1.09002 * 109.47447 * 174.05774 * 6 4 2 30 30 H 1.09008 * 109.46973 * 294.05757 * 6 4 2 31 31 H 0.96999 * 120.00198 * 4.50919 * 7 6 4 32 32 H 0.97002 * 119.99532 * 179.97438 * 11 10 8 33 33 H 1.08004 * 119.98626 * 0.02562 * 17 16 4 34 34 H 1.08005 * 119.98352 * 180.02562 * 18 17 16 35 35 H 1.07991 * 119.99509 * 180.27636 * 19 18 17 36 36 H 1.08002 * 120.00551 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.7934 -0.2271 2.0631 6 6 1.3174 -2.1367 1.1869 7 7 1.4686 -2.8033 -0.1089 8 6 0.8606 -4.0096 -0.3333 9 1 0.2693 -4.4694 0.4448 10 6 1.0043 -4.6415 -1.5609 11 7 1.7244 -4.0809 -2.5093 12 14 0.1743 -6.2867 -1.8673 13 1 -1.1841 -6.0600 -2.4228 14 1 0.9795 -7.0747 -2.8347 15 1 0.0678 -7.0332 -0.5880 16 6 3.4828 -0.9469 0.9760 17 6 4.0655 -0.8036 -0.2693 18 6 5.4298 -0.9689 -0.4174 19 6 6.2124 -1.2782 0.6795 20 6 5.6309 -1.4227 1.9248 21 6 4.2653 -1.2559 2.0741 22 17 3.5343 -1.4362 3.6383 23 1 -0.3633 0.3473 0.9673 24 1 -0.3634 0.6640 -0.7844 25 1 -0.3635 -1.0113 -0.1827 26 1 3.0851 1.3423 -0.0005 27 1 1.6459 1.8948 -0.8900 28 1 1.6460 1.8947 0.8900 29 1 1.7815 -2.7439 1.9642 30 1 0.2578 -2.0101 1.4090 31 1 1.9993 -2.3902 -0.8078 32 1 1.8251 -4.5226 -3.3670 33 1 3.4547 -0.5616 -1.1265 34 1 5.8846 -0.8564 -1.3906 35 1 7.2789 -1.4028 0.5640 36 1 6.2424 -1.6639 2.7818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309969703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:54 Heat of formation + Delta-G solvation = 27.914130 kcal Electronic energy + Delta-G solvation = -18941.019836 eV Core-core repulsion = 16064.976763 eV Total energy + Delta-G solvation = -2876.043073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87190 -38.49467 -37.33668 -35.92406 -33.44522 -32.16635 -31.58188 -29.28641 -28.04465 -25.96367 -24.47215 -23.45138 -23.14390 -20.82711 -19.19019 -18.05744 -17.15213 -16.69500 -16.34842 -16.04562 -15.57172 -15.32774 -15.05499 -14.77007 -14.50844 -14.36512 -13.86027 -13.40244 -13.28469 -13.13337 -12.79484 -12.74888 -12.47176 -12.42758 -12.36566 -12.19530 -12.10121 -11.85098 -11.73411 -11.47936 -10.87485 -9.67658 -9.51278 -9.17521 -8.85632 -7.84998 -5.10705 0.29533 0.45326 1.22408 1.48548 1.49632 1.57766 2.60221 2.78360 2.97372 3.46154 3.69734 4.02449 4.03952 4.21593 4.24118 4.34896 4.48239 4.51669 4.58440 4.66916 4.71793 4.73855 4.82580 4.94528 5.01934 5.03637 5.15361 5.20604 5.36394 5.52411 5.54205 5.62729 5.99546 6.16473 6.23911 6.36815 7.45042 8.23357 8.53943 9.37797 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.007022 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.724695 B = 3986.539353 C = 4269.154122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.545 5.545 3 C 0.024 3.976 4 C 0.126 3.874 5 H 0.062 0.938 6 C 0.162 3.838 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.067 0.933 10 C -0.069 4.069 11 N -0.960 5.960 12 Si 0.965 3.035 13 H -0.288 1.288 14 H -0.296 1.296 15 H -0.275 1.275 16 C -0.070 4.070 17 C -0.089 4.089 18 C -0.124 4.124 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.048 4.048 22 Cl -0.076 7.076 23 H 0.031 0.969 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.018 0.982 30 H 0.023 0.977 31 H 0.386 0.614 32 H 0.248 0.752 33 H 0.128 0.872 34 H 0.143 0.857 35 H 0.160 0.840 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.729 11.323 8.498 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.269 5.269 3 C -0.124 4.124 4 C 0.017 3.983 5 H 0.079 0.921 6 C 0.034 3.966 7 N -0.367 5.367 8 C -0.373 4.373 9 H 0.085 0.915 10 C -0.262 4.262 11 N -0.611 5.611 12 Si 0.795 3.205 13 H -0.216 1.216 14 H -0.223 1.223 15 H -0.200 1.200 16 C -0.071 4.071 17 C -0.108 4.108 18 C -0.142 4.142 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.074 4.074 22 Cl -0.047 7.047 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.220 0.780 32 H 0.057 0.943 33 H 0.146 0.854 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.704 10.947 8.270 15.270 hybrid contribution -0.839 -0.601 0.269 1.066 sum 5.866 10.346 8.539 14.641 Atomic orbital electron populations 1.22293 0.86568 1.02345 1.00211 1.61713 1.08683 1.14108 1.42405 1.22497 1.00928 0.87747 1.01207 1.20648 0.90603 0.94596 0.92440 0.92077 1.20767 0.96457 0.90629 0.88712 1.42325 1.60834 1.21369 1.12204 1.19561 1.23261 0.97049 0.97399 0.91520 1.25399 1.02179 1.02123 0.96518 1.69831 1.45780 1.40558 1.04891 0.85260 0.77600 0.80324 0.77288 1.21582 1.22294 1.20019 1.19585 0.94680 1.00075 0.92789 1.21139 0.95348 0.97935 0.96331 1.21562 0.93512 0.98902 1.00225 1.21412 1.01437 0.98689 0.91245 1.21239 0.92033 1.00934 0.99599 1.20921 0.94070 1.06361 0.86097 1.98327 1.83674 1.96096 1.26589 0.95016 0.90536 0.92697 0.91346 0.90250 0.95136 0.96441 0.95942 0.77953 0.94291 0.85436 0.83917 0.82250 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 8.73 127.69 1.12 2.21 16 2 N -0.54 -18.30 3.28 -927.75 -3.04 -21.34 16 3 C 0.02 0.63 8.93 127.69 1.14 1.77 16 4 C 0.13 4.42 1.41 44.17 0.06 4.48 16 5 H 0.06 2.00 7.34 -2.39 -0.02 1.98 16 6 C 0.16 6.90 5.03 86.38 0.43 7.33 16 7 N -0.72 -37.50 4.80 -343.43 -1.65 -39.15 16 8 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 9 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 10 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 11 N -0.96 -59.09 13.06 21.65 0.28 -58.80 16 12 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 13 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 15 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 16 C -0.07 -2.40 4.13 -19.84 -0.08 -2.48 16 17 C -0.09 -3.03 6.89 22.27 0.15 -2.88 16 18 C -0.12 -3.52 10.05 22.27 0.22 -3.29 16 19 C -0.11 -2.69 10.05 22.27 0.22 -2.47 16 20 C -0.12 -3.16 9.83 22.29 0.22 -2.94 16 21 C -0.05 -1.49 6.30 22.33 0.14 -1.35 16 22 Cl -0.08 -2.20 26.66 -2.72 -0.07 -2.27 16 23 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 24 H 0.08 2.19 8.06 -2.38 -0.02 2.17 16 25 H 0.05 2.18 6.41 -2.39 -0.02 2.17 16 26 H 0.07 1.79 6.03 -2.39 -0.01 1.78 16 27 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 28 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.02 0.78 7.30 -2.39 -0.02 0.77 16 30 H 0.02 0.97 6.83 -2.38 -0.02 0.95 16 31 H 0.39 21.12 6.27 -92.71 -0.58 20.54 16 32 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.13 4.75 6.80 -2.91 -0.02 4.73 16 34 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -65.06 305.26 2.98 -62.08 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.50 Total: 26.39 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.94 Total: -16.10 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -4.41 Total: -119.29 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.07 Total: -2.27 kcal Total: -65.06 2.98 -62.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309969703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.997 kcal (2) G-P(sol) polarization free energy of solvation -65.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds