Wall clock time and date at job start Mon Mar 30 2020 06:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99713 * 2 1 4 4 H 1.48508 * 109.46898 * 269.99920 * 3 2 1 5 5 H 1.48499 * 109.47354 * 29.99849 * 3 2 1 6 6 H 1.48503 * 109.47307 * 150.00507 * 3 2 1 7 7 C 1.37875 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.39008 * 120.00041 * 90.00095 * 10 9 7 12 12 C 1.39136 * 119.70673 * 88.84598 * 11 10 9 13 13 C 1.38294 * 119.09725 * 180.26008 * 12 11 10 14 14 C 1.38885 * 118.50544 * 359.48012 * 13 12 11 15 15 C 1.50697 * 120.33851 * 180.24823 * 14 13 12 16 16 F 1.39899 * 109.47094 * 300.25618 * 15 14 13 17 17 F 1.39903 * 109.46907 * 60.25413 * 15 14 13 18 18 C 1.38017 * 119.32882 * 0.49956 * 14 13 12 19 19 N 1.31974 * 120.85700 * 359.76553 * 18 14 13 20 20 C 1.46501 * 120.00198 * 269.99759 * 10 9 7 21 21 C 1.53009 * 117.49724 * 183.34917 * 20 10 9 22 22 C 1.53003 * 117.49584 * 114.72795 * 20 10 9 23 23 H 0.96995 * 120.00300 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47499 * 59.99941 * 9 7 2 25 25 H 1.09004 * 109.47045 * 299.99764 * 9 7 2 26 26 H 1.07998 * 120.45248 * 359.97438 * 12 11 10 27 27 H 1.08001 * 120.74871 * 179.72231 * 13 12 11 28 28 H 1.08997 * 109.47740 * 180.25078 * 15 14 13 29 29 H 1.08005 * 119.57632 * 179.74789 * 18 14 13 30 30 H 1.08993 * 115.55043 * 329.05710 * 20 10 9 31 31 H 1.09000 * 117.49520 * 359.97438 * 21 20 10 32 32 H 1.08994 * 117.49677 * 145.02227 * 21 20 10 33 33 H 1.09000 * 117.49582 * 214.98214 * 22 20 10 34 34 H 1.09000 * 117.49727 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.6558 -4.1403 1.2052 12 6 1.9482 -5.1713 1.8155 13 6 2.4068 -5.6832 3.0155 14 6 3.5682 -5.1526 3.5619 15 6 4.1079 -5.6833 4.8650 16 9 3.1512 -5.5103 5.8710 17 9 4.4002 -7.0447 4.7287 18 6 4.2201 -4.1306 2.9021 19 7 3.7565 -3.6577 1.7605 20 6 2.6782 -4.1699 -1.2674 21 6 3.6101 -5.3818 -1.2018 22 6 4.1639 -4.0111 -1.5965 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8920 26 1 1.0506 -5.5632 1.3606 27 1 1.8760 -6.4805 3.5146 28 1 5.0158 -5.1416 5.1299 29 1 5.1214 -3.7122 3.3255 30 1 1.9713 -4.1224 -2.0957 31 1 3.8700 -5.7639 -0.2147 32 1 3.5162 -6.1318 -1.9871 33 1 4.4345 -3.8595 -2.6415 34 1 4.7879 -3.4923 -0.8688 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310357622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:54 Heat of formation + Delta-G solvation = -21.505068 kcal Electronic energy + Delta-G solvation = -20147.171164 eV Core-core repulsion = 16717.188433 eV Total energy + Delta-G solvation = -3429.982730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.01316 -47.00307 -40.05778 -37.24819 -33.92347 -32.69838 -32.14402 -30.60624 -27.07839 -25.39334 -23.48436 -22.59173 -22.21113 -21.80775 -19.98997 -17.65676 -17.32275 -17.24347 -16.46476 -16.27987 -15.67643 -15.56954 -14.37414 -14.36352 -14.01670 -13.93132 -13.39166 -13.34767 -12.94790 -12.78749 -12.53944 -12.42377 -12.12141 -11.23361 -11.13797 -11.06931 -10.97449 -10.63320 -10.46558 -10.15761 -9.79661 -9.65834 -9.44921 -9.14206 -8.73286 -8.39855 -7.00557 -5.97030 -4.02907 1.12829 1.50286 3.32840 3.39003 3.44497 3.64436 3.89115 3.93817 4.15610 4.39129 4.48148 4.50310 4.83144 5.01494 5.02404 5.22607 5.33947 5.38834 5.42035 5.54375 5.62460 5.88444 5.96219 6.14549 6.20045 6.28383 6.43739 6.61270 6.70969 7.15828 7.34991 7.94173 8.21829 8.29275 8.38146 8.61353 9.08466 9.63000 11.07507 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.005770 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.130720 B = 4851.773657 C = 5638.758958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.277 3.723 10 N -0.637 5.637 11 C 0.435 3.565 12 C -0.178 4.178 13 C -0.034 4.034 14 C -0.253 4.253 15 C 0.323 3.677 16 F -0.202 7.202 17 F -0.203 7.203 18 C 0.146 3.854 19 N -0.484 5.484 20 C 0.139 3.861 21 C -0.206 4.206 22 C -0.204 4.204 23 H 0.261 0.739 24 H 0.032 0.968 25 H 0.021 0.979 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.958 -12.444 5.042 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.158 3.842 10 N -0.362 5.362 11 C 0.208 3.792 12 C -0.201 4.201 13 C -0.061 4.061 14 C -0.256 4.256 15 C 0.268 3.732 16 F -0.183 7.183 17 F -0.185 7.185 18 C -0.014 4.014 19 N -0.195 5.195 20 C 0.032 3.968 21 C -0.245 4.245 22 C -0.244 4.244 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.157 0.843 27 H 0.151 0.849 28 H 0.136 0.864 29 H 0.171 0.829 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.155 -11.616 4.613 14.402 hybrid contribution 0.040 0.348 0.565 0.665 sum 7.195 -11.269 5.179 14.338 Atomic orbital electron populations 1.69930 1.05963 1.26813 1.51533 1.24976 0.94808 0.99150 0.95519 0.86561 0.79895 0.83320 0.78036 1.20721 1.21394 1.19921 1.21780 0.94054 0.90755 1.49358 0.91733 1.19012 0.86096 0.81845 0.97215 1.45876 1.51752 1.40696 0.97888 1.18310 0.86886 0.86755 0.87280 1.22456 1.02396 0.98826 0.96403 1.21221 0.93474 0.97265 0.94090 1.21221 1.01031 1.04029 0.99354 1.20204 0.90406 0.78579 0.83975 1.93010 1.67472 1.95191 1.62604 1.92998 1.93848 1.35405 1.96226 1.22407 0.97763 0.90843 0.90391 1.67968 1.14661 1.26876 1.09982 1.21157 0.90798 0.96492 0.88340 1.23222 1.07022 0.92084 1.02130 1.23443 1.00821 0.98553 1.01585 0.92930 0.94997 0.96095 0.84335 0.84910 0.86431 0.82940 0.86389 0.90017 0.88986 0.89448 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.51 9.39 -34.44 -0.32 -14.84 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.28 6.98 5.48 -5.20 -0.03 6.96 16 10 N -0.64 -13.36 2.79 -167.61 -0.47 -13.82 16 11 C 0.43 8.43 4.46 -155.02 -0.69 7.74 16 12 C -0.18 -2.91 10.01 -39.23 -0.39 -3.30 16 13 C -0.03 -0.49 9.76 -39.32 -0.38 -0.87 16 14 C -0.25 -3.45 5.38 -104.47 -0.56 -4.01 16 15 C 0.32 3.56 5.47 36.00 0.20 3.76 16 16 F -0.20 -2.58 17.26 2.25 0.04 -2.54 16 17 F -0.20 -2.45 17.27 2.25 0.04 -2.41 16 18 C 0.15 2.19 10.82 -17.57 -0.19 2.00 16 19 N -0.48 -9.32 10.40 -12.44 -0.13 -9.45 16 20 C 0.14 2.50 6.57 -67.92 -0.45 2.05 16 21 C -0.21 -3.14 9.83 -26.72 -0.26 -3.41 16 22 C -0.20 -3.46 10.36 -26.73 -0.28 -3.73 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 25 H 0.02 0.57 8.05 -51.93 -0.42 0.15 16 26 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.12 0.87 7.88 -51.93 -0.41 0.46 16 29 H 0.15 1.74 7.94 -52.48 -0.42 1.32 16 30 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 31 H 0.08 1.32 7.05 -51.93 -0.37 0.95 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 308.64 15.07 4.65 4.65 Total: -1.00 -30.97 308.64 -7.72 -38.69 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.11 Total: -0.16 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.46 Total: -6.17 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.14 Total: -48.99 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.08 Total: -4.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.97 -7.72 -38.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310357622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.183 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds