Wall clock time and date at job start Mon Mar 30 2020 06:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99713 * 2 1 4 4 H 1.48508 * 109.46898 * 269.99920 * 3 2 1 5 5 H 1.48499 * 109.47354 * 29.99849 * 3 2 1 6 6 H 1.48503 * 109.47307 * 150.00507 * 3 2 1 7 7 C 1.37875 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.39008 * 120.00041 * 90.00095 * 10 9 7 12 12 C 1.39136 * 119.70673 * 88.84598 * 11 10 9 13 13 C 1.38294 * 119.09725 * 180.26008 * 12 11 10 14 14 C 1.38885 * 118.50544 * 359.48012 * 13 12 11 15 15 C 1.50697 * 120.33851 * 180.24823 * 14 13 12 16 16 F 1.39899 * 109.47094 * 300.25618 * 15 14 13 17 17 F 1.39903 * 109.46907 * 60.25413 * 15 14 13 18 18 C 1.38017 * 119.32882 * 0.49956 * 14 13 12 19 19 N 1.31974 * 120.85700 * 359.76553 * 18 14 13 20 20 C 1.46501 * 120.00198 * 269.99759 * 10 9 7 21 21 C 1.53009 * 117.49724 * 183.34917 * 20 10 9 22 22 C 1.53003 * 117.49584 * 114.72795 * 20 10 9 23 23 H 0.96995 * 120.00300 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47499 * 59.99941 * 9 7 2 25 25 H 1.09004 * 109.47045 * 299.99764 * 9 7 2 26 26 H 1.07998 * 120.45248 * 359.97438 * 12 11 10 27 27 H 1.08001 * 120.74871 * 179.72231 * 13 12 11 28 28 H 1.08997 * 109.47740 * 180.25078 * 15 14 13 29 29 H 1.08005 * 119.57632 * 179.74789 * 18 14 13 30 30 H 1.08993 * 115.55043 * 329.05710 * 20 10 9 31 31 H 1.09000 * 117.49520 * 359.97438 * 21 20 10 32 32 H 1.08994 * 117.49677 * 145.02227 * 21 20 10 33 33 H 1.09000 * 117.49582 * 214.98214 * 22 20 10 34 34 H 1.09000 * 117.49727 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.6558 -4.1403 1.2052 12 6 1.9482 -5.1713 1.8155 13 6 2.4068 -5.6832 3.0155 14 6 3.5682 -5.1526 3.5619 15 6 4.1079 -5.6833 4.8650 16 9 3.1512 -5.5103 5.8710 17 9 4.4002 -7.0447 4.7287 18 6 4.2201 -4.1306 2.9021 19 7 3.7565 -3.6577 1.7605 20 6 2.6782 -4.1699 -1.2674 21 6 3.6101 -5.3818 -1.2018 22 6 4.1639 -4.0111 -1.5965 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8920 26 1 1.0506 -5.5632 1.3606 27 1 1.8760 -6.4805 3.5146 28 1 5.0158 -5.1416 5.1299 29 1 5.1214 -3.7122 3.3255 30 1 1.9713 -4.1224 -2.0957 31 1 3.8700 -5.7639 -0.2147 32 1 3.5162 -6.1318 -1.9871 33 1 4.4345 -3.8595 -2.6415 34 1 4.7879 -3.4923 -0.8688 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310357622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:54 Heat of formation + Delta-G solvation = -38.820663 kcal Electronic energy + Delta-G solvation = -20147.922024 eV Core-core repulsion = 16717.188433 eV Total energy + Delta-G solvation = -3430.733591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.93228 -47.92852 -41.33679 -38.62781 -35.61850 -34.36911 -33.53605 -32.03633 -28.84880 -26.71188 -24.70194 -24.41615 -23.51655 -23.11055 -21.35688 -18.75101 -18.47155 -18.28865 -18.16079 -17.63874 -17.29128 -16.89832 -16.21967 -15.65128 -15.24624 -14.91349 -14.63042 -14.41950 -14.31481 -14.18798 -14.04763 -13.75144 -13.57141 -13.04888 -12.94506 -12.53841 -12.37066 -12.17394 -12.12564 -11.99472 -11.34255 -11.18498 -10.92228 -10.59693 -10.48241 -9.98320 -8.67413 -8.05125 -6.27091 -0.10247 0.30019 1.37682 1.38120 1.49682 2.32849 2.46507 2.68240 2.78922 3.06464 3.13373 3.28698 3.55562 3.71781 3.89852 3.99139 4.07436 4.11617 4.21733 4.26022 4.40097 4.73718 4.74820 4.91247 4.92771 5.02258 5.10068 5.14272 5.25465 5.33566 5.49243 5.75115 6.19830 6.53785 6.86559 6.93194 7.21915 7.44595 8.90159 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.005770 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.130720 B = 4851.773657 C = 5638.758958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.049 0.951 9 C 0.295 3.705 10 N -0.643 5.643 11 C 0.402 3.598 12 C -0.184 4.184 13 C -0.033 4.033 14 C -0.244 4.244 15 C 0.327 3.673 16 F -0.211 7.211 17 F -0.208 7.208 18 C 0.140 3.860 19 N -0.524 5.524 20 C 0.108 3.892 21 C -0.170 4.170 22 C -0.207 4.207 23 H 0.264 0.736 24 H 0.016 0.984 25 H -0.007 1.007 26 H 0.144 0.856 27 H 0.158 0.842 28 H 0.165 0.835 29 H 0.188 0.812 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 -13.271 5.858 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.067 0.933 9 C 0.174 3.826 10 N -0.369 5.369 11 C 0.176 3.824 12 C -0.207 4.207 13 C -0.059 4.059 14 C -0.247 4.247 15 C 0.273 3.727 16 F -0.192 7.192 17 F -0.189 7.189 18 C -0.019 4.019 19 N -0.235 5.235 20 C 0.002 3.998 21 C -0.208 4.208 22 C -0.247 4.247 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.011 0.989 26 H 0.162 0.838 27 H 0.175 0.825 28 H 0.182 0.818 29 H 0.205 0.795 30 H 0.141 0.859 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.657 -12.475 5.428 16.126 hybrid contribution -0.392 0.529 0.378 0.759 sum 8.265 -11.946 5.806 15.644 Atomic orbital electron populations 1.70032 1.07236 1.27744 1.52263 1.25754 0.95646 1.02471 0.95168 0.85576 0.78452 0.79325 0.78409 1.19696 1.20666 1.20014 1.21954 0.93346 0.92274 1.49175 0.93283 1.18470 0.86401 0.82811 0.94912 1.45609 1.51625 1.39872 0.99769 1.18465 0.88138 0.88424 0.87374 1.22479 1.02445 0.98524 0.97236 1.21561 0.93737 0.97376 0.93201 1.21551 1.00180 1.02830 1.00119 1.20510 0.91475 0.78571 0.82181 1.92997 1.68224 1.95226 1.62762 1.92995 1.93812 1.35913 1.96162 1.22972 0.98752 0.90971 0.89255 1.67849 1.15305 1.28399 1.11993 1.21404 0.91511 0.99095 0.87752 1.23190 1.03546 0.91488 1.02558 1.23383 0.99412 0.99894 1.01969 0.92694 0.96627 0.98935 0.83770 0.82450 0.81849 0.79478 0.85949 0.90821 0.85713 0.87485 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.53 -30.39 9.39 25.60 0.24 -30.14 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.29 15.58 5.48 85.63 0.47 16.05 16 10 N -0.64 -27.90 2.79 -684.20 -1.91 -29.81 16 11 C 0.40 15.83 4.46 133.06 0.59 16.43 16 12 C -0.18 -6.01 10.01 22.50 0.23 -5.78 16 13 C -0.03 -0.88 9.76 22.44 0.22 -0.66 16 14 C -0.24 -6.07 5.38 -19.76 -0.11 -6.18 16 15 C 0.33 6.06 5.47 71.23 0.39 6.45 16 16 F -0.21 -4.77 17.26 44.97 0.78 -4.00 16 17 F -0.21 -4.33 17.27 44.97 0.78 -3.56 16 18 C 0.14 3.96 10.82 84.62 0.92 4.87 16 19 N -0.52 -20.23 10.40 -193.26 -2.01 -22.24 16 20 C 0.11 3.94 6.57 45.00 0.30 4.23 16 21 C -0.17 -4.96 9.83 30.60 0.30 -4.66 16 22 C -0.21 -6.96 10.36 30.60 0.32 -6.64 16 23 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 24 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 25 H -0.01 -0.42 8.05 -2.38 -0.02 -0.44 16 26 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 27 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.16 1.63 7.88 -2.39 -0.02 1.61 16 29 H 0.19 3.73 7.94 -2.91 -0.02 3.70 16 30 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 31 H 0.07 2.30 7.05 -2.39 -0.02 2.28 16 32 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -68.73 308.64 5.37 -63.36 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.11 Total: 9.29 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.32 Total: -5.13 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -3.63 Total: -107.47 kcal Atomic # 9 Polarization: -9.10 SS G_CDS: 1.55 Total: -7.55 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.73 5.37 -63.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310357622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.537 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds