Wall clock time and date at job start Mon Mar 30 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99834 * 2 1 4 4 H 1.48499 * 109.47234 * 270.00062 * 3 2 1 5 5 H 1.48506 * 109.47042 * 29.99921 * 3 2 1 6 6 H 1.48491 * 109.47139 * 149.99622 * 3 2 1 7 7 C 1.37873 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99867 * 180.02562 * 7 2 1 10 10 H 1.08992 * 110.35571 * 299.30818 * 9 7 2 11 11 C 1.54945 * 110.30608 * 177.16518 * 9 7 2 12 12 C 1.55457 * 100.98992 * 204.69000 * 11 9 7 13 13 C 1.54383 * 102.18330 * 34.04070 * 12 11 9 14 14 H 1.09003 * 109.82779 * 98.29523 * 13 12 11 15 15 C 1.50698 * 109.83077 * 219.18149 * 13 12 11 16 16 C 1.36122 * 120.17200 * 95.15095 * 15 13 12 17 17 C 1.39333 * 120.98705 * 180.24153 * 16 15 13 18 18 C 1.36130 * 120.98770 * 359.43812 * 17 16 15 19 19 C 1.40500 * 119.65433 * 0.26590 * 18 17 16 20 20 C 1.40549 * 121.29304 * 179.97438 * 19 18 17 21 21 C 1.36089 * 119.65499 * 180.02562 * 20 19 18 22 22 C 1.39378 * 120.99142 * 359.95331 * 21 20 19 23 23 C 1.36089 * 120.99663 * 0.04516 * 22 21 20 24 24 C 1.40503 * 120.17334 * 274.81125 * 15 13 12 25 25 O 1.43233 * 107.66471 * 338.74373 * 13 12 11 26 26 H 0.97001 * 119.99649 * 0.02562 * 1 2 3 27 27 H 1.08996 * 111.12805 * 322.55902 * 11 9 7 28 28 H 1.09003 * 111.12873 * 86.68220 * 11 9 7 29 29 H 1.09000 * 110.83667 * 275.89500 * 12 11 9 30 30 H 1.09004 * 110.92412 * 152.22771 * 12 11 9 31 31 H 1.08000 * 119.50893 * 359.96012 * 16 15 13 32 32 H 1.08002 * 119.50939 * 179.72609 * 17 16 15 33 33 H 1.07998 * 120.17215 * 180.27939 * 18 17 16 34 34 H 1.08006 * 120.16948 * 359.97438 * 20 19 18 35 35 H 1.08001 * 119.49976 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.50011 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.17649 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8910 -0.6939 -0.8899 11 6 4.0494 -2.6452 0.0735 12 6 5.4523 -2.4105 0.7006 13 6 5.1922 -1.2157 1.6430 14 1 5.0435 -1.5738 2.6617 15 6 6.3622 -0.2668 1.6005 16 6 6.3388 0.8114 0.7700 17 6 7.4132 1.6968 0.7133 18 6 8.5127 1.5155 1.4951 19 6 8.5706 0.4171 2.3694 20 6 9.6890 0.1966 3.1915 21 6 9.7101 -0.8785 4.0256 22 6 8.6372 -1.7666 4.0789 23 6 7.5377 -1.5851 3.2978 24 6 7.4799 -0.4865 2.4230 25 8 4.0097 -0.5500 1.1846 26 1 -0.4850 0.8401 -0.0004 27 1 3.4284 -3.2624 0.7228 28 1 4.1310 -3.0841 -0.9209 29 1 6.1809 -2.1481 -0.0665 30 1 5.7783 -3.2850 1.2638 31 1 5.4764 0.9807 0.1422 32 1 7.3711 2.5421 0.0424 33 1 9.3361 2.2124 1.4438 34 1 10.5278 0.8764 3.1608 35 1 10.5709 -1.0458 4.6560 36 1 8.6792 -2.6117 4.7501 37 1 6.7140 -2.2818 3.3495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310915847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:59 Heat of formation + Delta-G solvation = -2.936351 kcal Electronic energy + Delta-G solvation = -20055.075758 eV Core-core repulsion = 17147.835006 eV Total energy + Delta-G solvation = -2907.240752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46991 -38.43874 -36.19924 -33.33995 -32.33049 -31.19735 -30.15732 -29.68027 -28.11438 -24.79841 -23.23471 -22.78676 -21.92236 -20.42295 -19.84228 -17.39081 -17.17746 -16.65273 -16.23064 -15.38312 -15.20392 -14.41197 -14.18216 -13.78260 -13.60628 -13.37119 -13.26042 -12.75102 -12.56620 -12.50054 -11.97509 -11.85854 -11.46043 -11.13611 -11.03603 -10.82574 -10.74695 -10.61379 -10.27924 -9.88511 -9.77405 -9.56579 -9.38176 -8.56077 -8.47221 -8.30091 -7.65477 -6.10899 -4.19456 0.65108 1.14809 2.17173 3.13514 3.37346 3.44305 3.67020 4.21866 4.52493 4.62317 4.77953 4.91862 4.96096 5.10192 5.15155 5.24518 5.31584 5.38326 5.45017 5.50399 5.55230 5.69469 5.83775 5.93950 5.98211 6.12145 6.24563 6.27443 6.34873 6.37425 6.41277 6.48996 6.54926 6.63189 6.73314 6.91305 6.97233 7.17648 7.20566 7.60610 8.25615 8.42967 8.90455 9.53222 10.99618 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.026618 B = 0.006052 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.666809 B = 4625.313121 C = 5278.791892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.084 3.916 3 Si 0.863 3.137 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.216 1.216 7 C -0.524 4.524 8 H 0.078 0.922 9 C 0.171 3.829 10 H 0.027 0.973 11 C -0.135 4.135 12 C -0.145 4.145 13 C 0.109 3.891 14 H 0.076 0.924 15 C -0.071 4.071 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.124 4.124 19 C -0.053 4.053 20 C -0.109 4.109 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.100 4.100 24 C -0.044 4.044 25 O -0.366 6.366 26 H 0.265 0.735 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.397 -0.764 4.905 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.120 4.120 3 Si 0.690 3.310 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.139 1.139 7 C -0.560 4.560 8 H 0.096 0.904 9 C 0.116 3.884 10 H 0.044 0.956 11 C -0.172 4.172 12 C -0.183 4.183 13 C 0.051 3.949 14 H 0.094 0.906 15 C -0.071 4.071 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.141 4.141 19 C -0.053 4.053 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.118 4.118 24 C -0.044 4.044 25 O -0.286 6.286 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.145 -0.489 5.002 19.793 hybrid contribution 0.368 0.791 -0.079 0.875 sum 19.512 0.302 4.923 20.126 Atomic orbital electron populations 1.69926 1.06708 1.27423 1.48941 1.25040 0.94639 0.99790 0.92525 0.87115 0.83209 0.82435 0.78266 1.21102 1.21799 1.13943 1.21031 0.87776 0.94813 1.52422 0.90382 1.20985 0.95120 0.87823 0.84464 0.95559 1.23180 0.93732 0.99906 1.00409 1.23142 0.98932 0.97310 0.98872 1.21428 0.85155 0.90095 0.98263 0.90647 1.20310 0.94748 0.96905 0.95167 1.20969 0.98388 0.93832 0.98880 1.20922 0.93568 0.99193 0.98908 1.20922 0.98740 0.97377 0.97111 1.18044 0.94227 0.95509 0.97492 1.20962 0.97243 0.98096 0.96419 1.20780 0.98616 0.95289 0.99325 1.20796 0.94044 0.99699 0.99834 1.21129 0.98376 0.96857 0.95406 1.17924 0.93905 0.95504 0.97107 1.88941 1.38388 1.54956 1.46352 0.92541 0.90847 0.91407 0.91393 0.91195 0.84937 0.86174 0.86012 0.85986 0.86390 0.86238 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.86 21.68 27.07 -169.99 -4.60 17.08 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.22 -5.20 4.17 56.52 0.24 -4.96 16 7 C -0.52 -14.78 9.39 -34.44 -0.32 -15.10 16 8 H 0.08 2.35 8.01 -52.49 -0.42 1.93 16 9 C 0.17 4.02 2.69 -26.86 -0.07 3.95 16 10 H 0.03 0.63 7.64 -51.93 -0.40 0.23 16 11 C -0.13 -2.59 6.53 -24.40 -0.16 -2.75 16 12 C -0.14 -2.39 6.55 -24.70 -0.16 -2.55 16 13 C 0.11 2.03 3.12 -27.16 -0.08 1.95 16 14 H 0.08 1.34 6.77 -51.93 -0.35 0.99 16 15 C -0.07 -1.24 4.94 -104.53 -0.52 -1.76 16 16 C -0.10 -1.81 9.29 -39.93 -0.37 -2.18 16 17 C -0.11 -1.58 9.95 -39.93 -0.40 -1.98 16 18 C -0.12 -1.65 9.77 -39.49 -0.39 -2.04 16 19 C -0.05 -0.75 5.74 -106.84 -0.61 -1.36 16 20 C -0.11 -1.28 9.77 -39.48 -0.39 -1.67 16 21 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16 22 C -0.13 -1.45 9.95 -39.93 -0.40 -1.84 16 23 C -0.10 -1.36 9.29 -39.48 -0.37 -1.72 16 24 C -0.04 -0.69 5.74 -106.83 -0.61 -1.31 16 25 O -0.37 -8.46 6.56 -35.23 -0.23 -8.69 16 26 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.13 2.56 6.06 -52.49 -0.32 2.24 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.61 6.51 -52.49 -0.34 1.27 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -31.56 299.85 -9.80 -41.36 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.91 Total: 2.19 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -5.34 Total: -29.73 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.77 Total: -26.72 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.23 Total: -8.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.60 Total: 17.08 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.56 -9.80 -41.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310915847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.419 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds