Wall clock time and date at job start Mon Mar 30 2020 07:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99834 * 2 1 4 4 H 1.48499 * 109.47234 * 270.00062 * 3 2 1 5 5 H 1.48506 * 109.47042 * 29.99921 * 3 2 1 6 6 H 1.48491 * 109.47139 * 149.99622 * 3 2 1 7 7 C 1.37873 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99867 * 180.02562 * 7 2 1 10 10 H 1.08992 * 110.35571 * 299.30818 * 9 7 2 11 11 C 1.54945 * 110.30608 * 177.16518 * 9 7 2 12 12 C 1.55457 * 100.98992 * 204.69000 * 11 9 7 13 13 C 1.54383 * 102.18330 * 34.04070 * 12 11 9 14 14 H 1.09003 * 109.82779 * 98.29523 * 13 12 11 15 15 C 1.50698 * 109.83077 * 219.18149 * 13 12 11 16 16 C 1.36122 * 120.17200 * 95.15095 * 15 13 12 17 17 C 1.39333 * 120.98705 * 180.24153 * 16 15 13 18 18 C 1.36130 * 120.98770 * 359.43812 * 17 16 15 19 19 C 1.40500 * 119.65433 * 0.26590 * 18 17 16 20 20 C 1.40549 * 121.29304 * 179.97438 * 19 18 17 21 21 C 1.36089 * 119.65499 * 180.02562 * 20 19 18 22 22 C 1.39378 * 120.99142 * 359.95331 * 21 20 19 23 23 C 1.36089 * 120.99663 * 0.04516 * 22 21 20 24 24 C 1.40503 * 120.17334 * 274.81125 * 15 13 12 25 25 O 1.43233 * 107.66471 * 338.74373 * 13 12 11 26 26 H 0.97001 * 119.99649 * 0.02562 * 1 2 3 27 27 H 1.08996 * 111.12805 * 322.55902 * 11 9 7 28 28 H 1.09003 * 111.12873 * 86.68220 * 11 9 7 29 29 H 1.09000 * 110.83667 * 275.89500 * 12 11 9 30 30 H 1.09004 * 110.92412 * 152.22771 * 12 11 9 31 31 H 1.08000 * 119.50893 * 359.96012 * 16 15 13 32 32 H 1.08002 * 119.50939 * 179.72609 * 17 16 15 33 33 H 1.07998 * 120.17215 * 180.27939 * 18 17 16 34 34 H 1.08006 * 120.16948 * 359.97438 * 20 19 18 35 35 H 1.08001 * 119.49976 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.50011 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.17649 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8910 -0.6939 -0.8899 11 6 4.0494 -2.6452 0.0735 12 6 5.4523 -2.4105 0.7006 13 6 5.1922 -1.2157 1.6430 14 1 5.0435 -1.5738 2.6617 15 6 6.3622 -0.2668 1.6005 16 6 6.3388 0.8114 0.7700 17 6 7.4132 1.6968 0.7133 18 6 8.5127 1.5155 1.4951 19 6 8.5706 0.4171 2.3694 20 6 9.6890 0.1966 3.1915 21 6 9.7101 -0.8785 4.0256 22 6 8.6372 -1.7666 4.0789 23 6 7.5377 -1.5851 3.2978 24 6 7.4799 -0.4865 2.4230 25 8 4.0097 -0.5500 1.1846 26 1 -0.4850 0.8401 -0.0004 27 1 3.4284 -3.2624 0.7228 28 1 4.1310 -3.0841 -0.9209 29 1 6.1809 -2.1481 -0.0665 30 1 5.7783 -3.2850 1.2638 31 1 5.4764 0.9807 0.1422 32 1 7.3711 2.5421 0.0424 33 1 9.3361 2.2124 1.4438 34 1 10.5278 0.8764 3.1608 35 1 10.5709 -1.0458 4.6560 36 1 8.6792 -2.6117 4.7501 37 1 6.7140 -2.2818 3.3495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310915847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:58 Heat of formation + Delta-G solvation = -20.111727 kcal Electronic energy + Delta-G solvation = -20055.820538 eV Core-core repulsion = 17147.835006 eV Total energy + Delta-G solvation = -2907.985532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58623 -39.93173 -37.23701 -34.98450 -34.04142 -32.77615 -31.22862 -30.94417 -29.57471 -26.53739 -24.28732 -23.81380 -23.29140 -22.12003 -21.17307 -19.02602 -18.36546 -18.10779 -17.50263 -16.81309 -16.74481 -15.87307 -15.41678 -15.15796 -14.75200 -14.73794 -14.51916 -14.28616 -14.14084 -13.81673 -13.40159 -13.05476 -12.84698 -12.66308 -12.52996 -12.19524 -12.13589 -11.85759 -11.80141 -11.59229 -11.44280 -11.31612 -10.80087 -10.64155 -10.06228 -9.49981 -8.70505 -8.36889 -6.49129 -0.35407 0.12500 1.14329 1.33317 1.37277 1.66435 2.12711 2.40630 2.88568 3.19199 3.47627 3.63238 3.80271 3.90115 4.00423 4.08933 4.13244 4.20035 4.32664 4.42561 4.46426 4.51670 4.59103 4.65635 4.72202 4.88547 4.95723 5.04299 5.05862 5.11571 5.27756 5.33925 5.40622 5.45368 5.52261 5.59209 5.66581 5.81385 5.96730 6.15830 6.18758 6.46003 6.71663 7.28095 8.77116 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.026618 B = 0.006052 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.666809 B = 4625.313121 C = 5278.791892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.029 3.971 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.204 1.204 7 C -0.531 4.531 8 H 0.043 0.957 9 C 0.171 3.829 10 H 0.026 0.974 11 C -0.132 4.132 12 C -0.127 4.127 13 C 0.103 3.897 14 H 0.080 0.920 15 C -0.091 4.091 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.109 4.109 19 C -0.072 4.072 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.060 4.060 25 O -0.390 6.390 26 H 0.267 0.733 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.787 -0.496 6.200 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.171 4.171 3 Si 0.749 3.251 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.126 1.126 7 C -0.568 4.568 8 H 0.061 0.939 9 C 0.116 3.884 10 H 0.043 0.957 11 C -0.170 4.170 12 C -0.164 4.164 13 C 0.045 3.955 14 H 0.097 0.903 15 C -0.091 4.091 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.127 4.127 19 C -0.072 4.072 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.061 4.061 25 O -0.311 6.311 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 23.554 -0.238 6.296 24.382 hybrid contribution -0.892 0.599 -0.366 1.135 sum 22.662 0.361 5.930 23.428 Atomic orbital electron populations 1.70056 1.08367 1.28314 1.51269 1.25896 0.95320 1.03457 0.92416 0.86159 0.82235 0.77910 0.78760 1.20039 1.22284 1.12592 1.21359 0.90640 0.93382 1.51438 0.93871 1.20790 0.92221 0.90689 0.84727 0.95676 1.23107 0.95222 0.97079 1.01558 1.23063 0.97056 0.97636 0.98686 1.21615 0.84185 0.91075 0.98631 0.90276 1.20181 0.95144 0.97083 0.96702 1.20924 0.98786 0.95234 0.99379 1.21079 0.93417 0.99548 1.00248 1.21322 0.98834 0.97196 0.95343 1.18407 0.94795 0.95607 0.98396 1.21332 0.97079 0.98827 0.95471 1.21233 0.99264 0.94342 0.98959 1.21200 0.93164 1.00221 0.98751 1.21242 0.99670 0.96965 0.96416 1.18079 0.93827 0.96775 0.97377 1.88805 1.40685 1.55734 1.45877 0.92449 0.91714 0.89807 0.90629 0.88122 0.87634 0.84318 0.82540 0.82955 0.82969 0.83559 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.41 13.96 21.45 0.30 -60.12 16 2 C 0.03 1.73 5.47 84.65 0.46 2.19 16 3 Si 0.93 46.49 27.07 68.60 1.86 48.35 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.20 -9.77 4.17 99.48 0.41 -9.35 16 7 C -0.53 -31.27 9.39 25.60 0.24 -31.03 16 8 H 0.04 2.76 8.01 -2.91 -0.02 2.73 16 9 C 0.17 8.22 2.69 30.51 0.08 8.31 16 10 H 0.03 1.22 7.64 -2.39 -0.02 1.20 16 11 C -0.13 -5.08 6.53 32.10 0.21 -4.87 16 12 C -0.13 -4.03 6.55 31.91 0.21 -3.82 16 13 C 0.10 3.80 3.12 30.32 0.09 3.89 16 14 H 0.08 2.80 6.77 -2.39 -0.02 2.78 16 15 C -0.09 -3.13 4.94 -19.81 -0.10 -3.23 16 16 C -0.13 -4.39 9.29 22.04 0.20 -4.18 16 17 C -0.13 -3.47 9.95 22.04 0.22 -3.25 16 18 C -0.11 -2.58 9.77 22.33 0.22 -2.36 16 19 C -0.07 -1.83 5.74 -21.30 -0.12 -1.95 16 20 C -0.11 -2.06 9.77 22.33 0.22 -1.84 16 21 C -0.12 -2.01 9.95 22.04 0.22 -1.79 16 22 C -0.12 -2.20 9.95 22.04 0.22 -1.99 16 23 C -0.13 -3.11 9.29 22.33 0.21 -2.90 16 24 C -0.06 -1.78 5.74 -21.30 -0.12 -1.91 16 25 O -0.39 -18.33 6.56 -148.98 -0.98 -19.30 16 26 H 0.27 16.08 8.31 -92.71 -0.77 15.30 16 27 H 0.06 2.58 8.05 -2.39 -0.02 2.56 16 28 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.08 2.30 7.84 -2.39 -0.02 2.28 16 30 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 31 H 0.11 4.17 6.06 -2.91 -0.02 4.15 16 32 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.13 3.03 6.51 -2.91 -0.02 3.01 16 Total: -1.00 -71.92 299.85 4.41 -67.51 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.77 Total: 14.30 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 2.46 Total: -50.74 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.30 Total: -60.12 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.98 Total: -19.30 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.86 Total: 48.35 kcal Total: -71.92 4.41 -67.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310915847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.400 kcal (2) G-P(sol) polarization free energy of solvation -71.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds