Wall clock time and date at job start Mon Mar 30 2020 07:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38295 * 120.00136 * 2 1 4 4 C 1.38229 * 120.19506 * 180.25726 * 3 2 1 5 5 C 1.38305 * 120.19973 * 359.74363 * 4 3 2 6 6 C 1.38627 * 119.99717 * 0.02562 * 5 4 3 7 7 N 1.39979 * 120.09388 * 180.02562 * 6 5 4 8 8 C 1.38650 * 120.00195 * 179.74727 * 2 1 3 9 9 N 1.40018 * 120.09715 * 0.02562 * 8 2 1 10 10 C 1.39681 * 120.00007 * 270.01357 * 9 8 2 11 11 C 1.39364 * 119.95236 * 353.74668 * 10 9 8 12 12 C 1.38469 * 120.42163 * 179.75837 * 11 10 9 13 13 C 1.37697 * 120.32837 * 0.51672 * 12 11 10 14 14 C 1.40761 * 119.89368 * 359.74093 * 13 12 11 15 15 C 1.41411 * 120.20101 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00236 * 25.92039 * 15 14 13 17 17 C 1.39931 * 119.99459 * 205.92052 * 15 14 13 18 18 N 1.30834 * 120.00089 * 16.77359 * 17 15 14 19 19 Si 1.86805 * 119.99805 * 196.77312 * 17 15 14 20 20 H 1.48501 * 109.46697 * 90.00100 * 19 17 15 21 21 H 1.48501 * 109.47033 * 210.00113 * 19 17 15 22 22 H 1.48500 * 109.47052 * 329.99903 * 19 17 15 23 23 C 1.38307 * 119.95488 * 174.01582 * 10 9 8 24 24 H 1.09000 * 109.46854 * 272.94936 * 1 2 3 25 25 H 1.09001 * 109.47312 * 32.94734 * 1 2 3 26 26 H 1.08998 * 109.47669 * 152.94965 * 1 2 3 27 27 H 1.08005 * 119.90289 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.90004 * 179.72564 * 4 3 2 29 29 H 1.07996 * 119.99780 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99547 * 185.55767 * 7 6 5 31 31 H 0.96994 * 120.00377 * 5.56526 * 7 6 5 32 32 H 0.97002 * 120.00258 * 90.28986 * 9 8 2 33 33 H 1.08002 * 119.79002 * 359.97438 * 11 10 9 34 34 H 1.08003 * 119.84097 * 180.25379 * 12 11 10 35 35 H 1.07994 * 120.05560 * 179.76220 * 13 12 11 36 36 H 0.97001 * 119.99654 * 179.97438 * 18 17 15 37 37 H 1.07991 * 120.16170 * 359.95964 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1977 0.0000 4 6 3.5807 1.2023 -0.0054 5 6 4.2805 0.0094 -0.0054 6 6 3.5955 -1.1959 -0.0006 7 7 4.3017 -2.4045 -0.0001 8 6 2.2002 -1.2007 0.0053 9 7 1.5022 -2.4145 0.0101 10 6 1.1534 -3.0147 1.2222 11 6 1.6114 -2.4756 2.4229 12 6 1.2674 -3.0598 3.6302 13 6 0.4770 -4.1870 3.6571 14 6 0.0113 -4.7460 2.4521 15 6 -0.8013 -5.9032 2.4721 16 1 -1.4049 -6.1244 3.3399 17 6 -0.8232 -6.7618 1.3673 18 7 0.1237 -6.6937 0.4670 19 14 -2.2045 -8.0051 1.1780 20 1 -3.3194 -7.3933 0.4112 21 1 -1.7003 -9.1983 0.4517 22 1 -2.6916 -8.4121 2.5205 23 6 0.3584 -4.1465 1.2287 24 1 -0.3633 0.0529 1.0263 25 1 -0.3634 0.8624 -0.5589 26 1 -0.3634 -0.9152 -0.4673 27 1 1.6569 2.1321 -0.0004 28 1 4.1159 2.1404 -0.0098 29 1 5.3604 0.0168 -0.0100 30 1 3.8242 -3.2452 -0.0781 31 1 5.2685 -2.4013 0.0783 32 1 1.2645 -2.8406 -0.8282 33 1 2.2359 -1.5944 2.4118 34 1 1.6243 -2.6318 4.5554 35 1 0.2146 -4.6413 4.6010 36 1 0.1086 -7.2891 -0.2986 37 1 0.0059 -4.5674 0.2988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313419373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:24 Heat of formation + Delta-G solvation = 41.694223 kcal Electronic energy + Delta-G solvation = -19741.108621 eV Core-core repulsion = 16868.095947 eV Total energy + Delta-G solvation = -2873.012674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61609 -37.42960 -34.70092 -34.43034 -33.24855 -31.12813 -29.42102 -28.74959 -26.97183 -26.07648 -25.13428 -21.76762 -21.02852 -20.92583 -19.83324 -17.40014 -16.69760 -16.40022 -16.03056 -15.58260 -14.75357 -14.49503 -14.18943 -13.98341 -13.34630 -13.03726 -12.76248 -12.68048 -12.24353 -12.09761 -11.93803 -11.76780 -11.41423 -11.17700 -11.04601 -10.88124 -10.59572 -10.42532 -10.15493 -9.66581 -9.45693 -9.29810 -8.86182 -8.22887 -7.28977 -7.15724 -6.73584 -6.24675 -4.30866 1.68397 1.93319 2.87412 3.10129 3.13803 3.21364 3.33773 3.98310 4.10605 4.19271 4.38184 4.73222 5.17349 5.24245 5.62005 5.70560 5.74874 5.84070 6.03571 6.04928 6.13892 6.33540 6.45800 6.57014 6.67209 6.79515 6.89766 6.99001 7.09925 7.14364 7.21217 7.39663 7.42326 7.74586 7.90619 8.01421 8.11051 8.12308 8.19002 8.51023 8.72658 8.85530 9.01049 9.10835 10.26782 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.004990 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.880839 B = 5609.705307 C = 5645.774109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.041 4.041 3 C -0.182 4.182 4 C -0.077 4.077 5 C -0.211 4.211 6 C 0.219 3.781 7 N -0.869 5.869 8 C 0.091 3.909 9 N -0.710 5.710 10 C 0.214 3.786 11 C -0.279 4.279 12 C -0.070 4.070 13 C -0.254 4.254 14 C 0.138 3.862 15 C -0.466 4.466 16 H 0.075 0.925 17 C 0.079 3.921 18 N -0.797 5.797 19 Si 0.904 3.096 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.263 1.263 23 C -0.224 4.224 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.404 0.596 31 H 0.392 0.608 32 H 0.394 0.606 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.276 0.724 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 9.448 -4.221 11.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.096 4.096 5 C -0.234 4.234 6 C 0.111 3.889 7 N -0.407 5.407 8 C -0.006 4.006 9 N -0.341 5.341 10 C 0.117 3.883 11 C -0.302 4.302 12 C -0.089 4.089 13 C -0.274 4.274 14 C 0.135 3.865 15 C -0.496 4.496 16 H 0.094 0.906 17 C -0.138 4.138 18 N -0.423 5.423 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.248 4.248 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.234 0.766 31 H 0.219 0.781 32 H 0.229 0.771 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.874 9.450 -4.353 11.489 hybrid contribution -0.298 -1.108 -0.354 1.201 sum 4.576 8.342 -4.706 10.615 Atomic orbital electron populations 1.20670 0.91266 1.02162 1.02431 1.20090 0.96089 0.92189 0.95972 1.20621 0.93949 0.96819 1.08851 1.20747 0.94015 0.96880 0.97942 1.20393 0.98940 0.91124 1.12954 1.18230 0.91204 0.86646 0.92794 1.42469 1.08673 1.05980 1.83603 1.16771 0.87905 0.86502 1.09439 1.41667 1.64383 1.21990 1.06053 1.17640 0.94271 0.92266 0.84086 1.19902 1.13325 1.05453 0.91496 1.20302 0.97571 0.95631 0.95364 1.20893 1.08105 1.01271 0.97168 1.17302 0.88402 0.90563 0.90261 1.19545 1.23303 1.05721 1.01066 0.90641 1.25840 0.95368 0.97747 0.94864 1.69850 1.28404 1.34101 1.09952 0.86387 0.81732 0.79593 0.79393 1.19420 1.20495 1.18721 1.20721 1.07375 0.97431 0.99227 0.91071 0.92384 0.91178 0.86810 0.86711 0.86791 0.76601 0.78093 0.77051 0.89650 0.89766 0.89435 0.91285 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.80 36.00 0.35 -1.29 16 2 C -0.04 -0.66 5.89 -104.45 -0.62 -1.27 16 3 C -0.18 -2.56 9.71 -39.56 -0.38 -2.94 16 4 C -0.08 -1.01 10.04 -39.56 -0.40 -1.41 16 5 C -0.21 -2.94 9.89 -39.41 -0.39 -3.33 16 6 C 0.22 3.48 6.66 -83.51 -0.56 2.92 16 7 N -0.87 -12.60 9.08 32.54 0.30 -12.31 16 8 C 0.09 1.58 4.38 -83.48 -0.37 1.22 16 9 N -0.71 -13.34 3.49 -8.30 -0.03 -13.36 16 10 C 0.21 4.83 6.61 -83.84 -0.55 4.27 16 11 C -0.28 -6.41 9.33 -39.08 -0.36 -6.78 16 12 C -0.07 -1.63 10.01 -39.69 -0.40 -2.03 16 13 C -0.25 -6.41 9.79 -38.83 -0.38 -6.79 16 14 C 0.14 3.70 5.56 -106.85 -0.59 3.10 16 15 C -0.47 -12.49 9.05 -37.74 -0.34 -12.83 16 16 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 17 C 0.08 1.98 5.15 -17.34 -0.09 1.89 16 18 N -0.80 -20.42 10.99 55.55 0.61 -19.81 16 19 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.22 -5.68 8.52 -38.67 -0.33 -6.01 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 26 H 0.07 1.13 7.37 -51.93 -0.38 0.75 16 27 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.40 6.46 8.13 -40.82 -0.33 6.13 16 31 H 0.39 4.60 8.85 -40.82 -0.36 4.24 16 32 H 0.39 7.08 8.84 -40.82 -0.36 6.72 16 33 H 0.09 1.92 6.89 -52.49 -0.36 1.56 16 34 H 0.08 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 37 H 0.12 3.03 6.23 -52.49 -0.33 2.71 16 LS Contribution 313.89 15.07 4.73 4.73 Total: -1.00 -27.82 313.89 -9.46 -37.28 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -4.63 Total: 20.97 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -5.41 Total: -31.29 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.88 Total: -45.48 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.82 -9.46 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.972 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds