Wall clock time and date at job start Mon Mar 30 2020 07:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38295 * 120.00136 * 2 1 4 4 C 1.38229 * 120.19506 * 180.25726 * 3 2 1 5 5 C 1.38305 * 120.19973 * 359.74363 * 4 3 2 6 6 C 1.38627 * 119.99717 * 0.02562 * 5 4 3 7 7 N 1.39979 * 120.09388 * 180.02562 * 6 5 4 8 8 C 1.38650 * 120.00195 * 179.74727 * 2 1 3 9 9 N 1.40018 * 120.09715 * 0.02562 * 8 2 1 10 10 C 1.39681 * 120.00007 * 270.01357 * 9 8 2 11 11 C 1.39364 * 119.95236 * 353.74668 * 10 9 8 12 12 C 1.38469 * 120.42163 * 179.75837 * 11 10 9 13 13 C 1.37697 * 120.32837 * 0.51672 * 12 11 10 14 14 C 1.40761 * 119.89368 * 359.74093 * 13 12 11 15 15 C 1.41411 * 120.20101 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00236 * 25.92039 * 15 14 13 17 17 C 1.39931 * 119.99459 * 205.92052 * 15 14 13 18 18 N 1.30834 * 120.00089 * 16.77359 * 17 15 14 19 19 Si 1.86805 * 119.99805 * 196.77312 * 17 15 14 20 20 H 1.48501 * 109.46697 * 90.00100 * 19 17 15 21 21 H 1.48501 * 109.47033 * 210.00113 * 19 17 15 22 22 H 1.48500 * 109.47052 * 329.99903 * 19 17 15 23 23 C 1.38307 * 119.95488 * 174.01582 * 10 9 8 24 24 H 1.09000 * 109.46854 * 272.94936 * 1 2 3 25 25 H 1.09001 * 109.47312 * 32.94734 * 1 2 3 26 26 H 1.08998 * 109.47669 * 152.94965 * 1 2 3 27 27 H 1.08005 * 119.90289 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.90004 * 179.72564 * 4 3 2 29 29 H 1.07996 * 119.99780 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99547 * 185.55767 * 7 6 5 31 31 H 0.96994 * 120.00377 * 5.56526 * 7 6 5 32 32 H 0.97002 * 120.00258 * 90.28986 * 9 8 2 33 33 H 1.08002 * 119.79002 * 359.97438 * 11 10 9 34 34 H 1.08003 * 119.84097 * 180.25379 * 12 11 10 35 35 H 1.07994 * 120.05560 * 179.76220 * 13 12 11 36 36 H 0.97001 * 119.99654 * 179.97438 * 18 17 15 37 37 H 1.07991 * 120.16170 * 359.95964 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1977 0.0000 4 6 3.5807 1.2023 -0.0054 5 6 4.2805 0.0094 -0.0054 6 6 3.5955 -1.1959 -0.0006 7 7 4.3017 -2.4045 -0.0001 8 6 2.2002 -1.2007 0.0053 9 7 1.5022 -2.4145 0.0101 10 6 1.1534 -3.0147 1.2222 11 6 1.6114 -2.4756 2.4229 12 6 1.2674 -3.0598 3.6302 13 6 0.4770 -4.1870 3.6571 14 6 0.0113 -4.7460 2.4521 15 6 -0.8013 -5.9032 2.4721 16 1 -1.4049 -6.1244 3.3399 17 6 -0.8232 -6.7618 1.3673 18 7 0.1237 -6.6937 0.4670 19 14 -2.2045 -8.0051 1.1780 20 1 -3.3194 -7.3933 0.4112 21 1 -1.7003 -9.1983 0.4517 22 1 -2.6916 -8.4121 2.5205 23 6 0.3584 -4.1465 1.2287 24 1 -0.3633 0.0529 1.0263 25 1 -0.3634 0.8624 -0.5589 26 1 -0.3634 -0.9152 -0.4673 27 1 1.6569 2.1321 -0.0004 28 1 4.1159 2.1404 -0.0098 29 1 5.3604 0.0168 -0.0100 30 1 3.8242 -3.2452 -0.0781 31 1 5.2685 -2.4013 0.0783 32 1 1.2645 -2.8406 -0.8282 33 1 2.2359 -1.5944 2.4118 34 1 1.6243 -2.6318 4.5554 35 1 0.2146 -4.6413 4.6010 36 1 0.1086 -7.2891 -0.2986 37 1 0.0059 -4.5674 0.2988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313419373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:24 Heat of formation + Delta-G solvation = 27.194372 kcal Electronic energy + Delta-G solvation = -19741.737382 eV Core-core repulsion = 16868.095947 eV Total energy + Delta-G solvation = -2873.641434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90373 -39.15773 -36.28247 -35.60567 -35.05420 -32.40551 -31.34490 -30.24585 -28.28628 -27.38179 -27.06217 -23.18103 -22.79019 -22.16120 -21.48887 -19.18163 -18.05069 -17.69878 -17.50680 -17.01561 -16.47765 -16.31391 -15.36068 -15.29531 -14.77236 -14.57248 -14.32500 -14.05721 -14.03264 -13.58319 -13.32727 -13.07597 -13.02861 -12.79252 -12.60810 -12.35261 -12.11200 -12.06166 -11.56743 -11.32925 -11.26537 -11.10194 -10.62285 -9.41913 -9.23529 -8.62122 -8.31654 -7.99422 -6.31482 0.51826 0.79331 1.08676 1.31460 1.39210 1.51332 1.58347 2.23610 2.77631 2.83299 2.99179 3.13561 3.85185 4.04990 4.21337 4.46570 4.56132 4.64988 4.66615 4.79695 4.81975 4.85075 5.00400 5.03781 5.20852 5.30175 5.33003 5.39240 5.49512 5.58771 5.69743 5.83223 5.97600 6.05904 6.14365 6.21431 6.29529 6.56679 6.66240 6.93077 7.00171 7.05396 7.18481 7.23849 8.39405 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.004990 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.880839 B = 5609.705307 C = 5645.774109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.055 4.055 3 C -0.184 4.184 4 C -0.069 4.069 5 C -0.211 4.211 6 C 0.206 3.794 7 N -0.868 5.868 8 C 0.055 3.945 9 N -0.697 5.697 10 C 0.232 3.768 11 C -0.280 4.280 12 C -0.067 4.067 13 C -0.281 4.281 14 C 0.111 3.889 15 C -0.504 4.504 16 H 0.070 0.930 17 C 0.040 3.960 18 N -0.822 5.822 19 Si 0.977 3.023 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.248 4.248 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.138 0.862 28 H 0.151 0.849 29 H 0.139 0.861 30 H 0.395 0.605 31 H 0.404 0.596 32 H 0.394 0.606 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.285 0.715 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 11.092 -4.800 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.057 4.057 3 C -0.204 4.204 4 C -0.087 4.087 5 C -0.235 4.235 6 C 0.098 3.902 7 N -0.406 5.406 8 C -0.042 4.042 9 N -0.326 5.326 10 C 0.133 3.867 11 C -0.303 4.303 12 C -0.086 4.086 13 C -0.301 4.301 14 C 0.108 3.892 15 C -0.534 4.534 16 H 0.088 0.912 17 C -0.175 4.175 18 N -0.449 5.449 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.193 1.193 22 H -0.185 1.185 23 C -0.272 4.272 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.156 0.844 28 H 0.168 0.832 29 H 0.157 0.843 30 H 0.223 0.777 31 H 0.234 0.766 32 H 0.230 0.770 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.780 11.133 -4.948 13.485 hybrid contribution -0.443 -1.454 -0.220 1.536 sum 5.336 9.679 -5.168 12.201 Atomic orbital electron populations 1.20640 0.91251 1.02495 1.01841 1.20263 0.96385 0.92639 0.96424 1.20939 0.94695 0.96872 1.07937 1.21194 0.93809 0.98060 0.95638 1.20751 1.00311 0.90552 1.11842 1.18421 0.90830 0.87730 0.93207 1.42460 1.09343 1.05313 1.83493 1.17036 0.88687 0.85935 1.12565 1.41533 1.63781 1.22485 1.04766 1.17620 0.92456 0.91082 0.85587 1.20020 1.13282 1.05599 0.91399 1.20598 0.96449 0.94792 0.96752 1.21015 1.09650 1.02594 0.96869 1.17667 0.89022 0.91182 0.91359 1.19778 1.24607 1.06916 1.02142 0.91200 1.26637 0.97456 0.99389 0.93990 1.69899 1.29622 1.34965 1.10370 0.85282 0.78321 0.77156 0.79381 1.18832 1.19269 1.18505 1.20618 1.09368 0.98969 0.98259 0.92335 0.89631 0.93039 0.84406 0.83159 0.84341 0.77690 0.76622 0.76993 0.88751 0.87081 0.89301 0.90497 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 9.80 71.23 0.70 -2.42 16 2 C -0.05 -1.68 5.89 -19.75 -0.12 -1.80 16 3 C -0.18 -4.58 9.71 22.28 0.22 -4.37 16 4 C -0.07 -1.52 10.04 22.28 0.22 -1.30 16 5 C -0.21 -5.21 9.89 22.38 0.22 -4.98 16 6 C 0.21 6.20 6.66 38.25 0.25 6.46 16 7 N -0.87 -24.30 9.08 -50.97 -0.46 -24.76 16 8 C 0.05 1.85 4.38 38.24 0.17 2.01 16 9 N -0.70 -26.55 3.49 -180.18 -0.63 -27.17 16 10 C 0.23 10.66 6.61 38.18 0.25 10.92 16 11 C -0.28 -12.84 9.33 22.60 0.21 -12.63 16 12 C -0.07 -3.15 10.01 22.20 0.22 -2.92 16 13 C -0.28 -14.59 9.79 22.76 0.22 -14.36 16 14 C 0.11 6.18 5.56 -21.31 -0.12 6.06 16 15 C -0.50 -28.11 9.05 23.46 0.21 -27.89 16 16 H 0.07 3.81 7.90 -2.91 -0.02 3.78 16 17 C 0.04 2.05 5.15 85.25 0.44 2.49 16 18 N -0.82 -43.21 10.99 21.82 0.24 -42.97 16 19 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 23 C -0.25 -13.10 8.52 22.86 0.19 -12.90 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 1.98 8.11 -2.39 -0.02 1.96 16 26 H 0.05 1.68 7.37 -2.39 -0.02 1.66 16 27 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 28 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.40 12.61 8.13 -92.71 -0.75 11.86 16 31 H 0.40 8.89 8.85 -92.71 -0.82 8.07 16 32 H 0.39 14.65 8.84 -92.71 -0.82 13.83 16 33 H 0.09 4.15 6.89 -2.91 -0.02 4.13 16 34 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.28 13.53 8.30 -92.71 -0.77 12.76 16 37 H 0.10 5.54 6.23 -2.92 -0.02 5.52 16 Total: -1.00 -61.22 313.89 3.20 -58.02 By element: Atomic # 1 Polarization: 54.70 SS G_CDS: -1.28 Total: 53.42 kcal Atomic # 6 Polarization: -60.94 SS G_CDS: 3.30 Total: -57.64 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -0.85 Total: -94.91 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -61.22 3.20 -58.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.210 kcal (2) G-P(sol) polarization free energy of solvation -61.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds