Wall clock time and date at job start Mon Mar 30 2020 07:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 119.90663 * 2 1 4 4 C 1.38255 * 120.20136 * 180.02562 * 3 2 1 5 5 C 1.38672 * 119.99882 * 359.97438 * 4 3 2 6 6 N 1.39976 * 120.09790 * 179.97438 * 5 4 3 7 7 C 1.39494 * 119.80375 * 0.02562 * 5 4 3 8 8 N 1.40023 * 120.09665 * 180.02562 * 7 5 4 9 9 C 1.39685 * 120.00205 * 72.55570 * 8 7 5 10 10 C 1.39359 * 119.95249 * 6.93003 * 9 8 7 11 11 C 1.38470 * 120.42133 * 179.97438 * 10 9 8 12 12 C 1.37696 * 120.32791 * 0.05103 * 11 10 9 13 13 C 1.40756 * 119.89670 * 359.94571 * 12 11 10 14 14 C 1.41414 * 120.20666 * 180.30261 * 13 12 11 15 15 H 1.08000 * 120.00096 * 150.99245 * 14 13 12 16 16 C 1.39930 * 119.99569 * 330.98990 * 14 13 12 17 17 N 1.30832 * 119.99199 * 164.40996 * 16 14 13 18 18 Si 1.86795 * 120.00197 * 344.41063 * 16 14 13 19 19 H 1.48501 * 109.46987 * 91.84624 * 18 16 14 20 20 H 1.48504 * 109.46808 * 211.84568 * 18 16 14 21 21 H 1.48500 * 109.47279 * 331.84440 * 18 16 14 22 22 C 1.38304 * 119.95573 * 186.91094 * 9 8 7 23 23 C 1.38258 * 119.89572 * 180.27431 * 2 1 3 24 24 H 1.09001 * 109.46598 * 89.99916 * 1 2 3 25 25 H 1.08996 * 109.47633 * 210.00102 * 1 2 3 26 26 H 1.09004 * 109.47002 * 330.00373 * 1 2 3 27 27 H 1.08001 * 119.89619 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.00301 * 179.97438 * 4 3 2 29 29 H 0.97007 * 120.00156 * 180.02562 * 6 5 4 30 30 H 0.97000 * 120.00430 * 0.02562 * 6 5 4 31 31 H 0.97000 * 120.00117 * 252.55741 * 8 7 5 32 32 H 1.08003 * 119.79291 * 359.97438 * 10 9 8 33 33 H 1.08004 * 119.83616 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.05426 * 180.02562 * 12 11 10 35 35 H 0.96999 * 119.99519 * 180.02562 * 17 16 14 36 36 H 1.08007 * 120.15893 * 0.03625 * 22 9 8 37 37 H 1.07995 * 120.00507 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1985 0.0000 4 6 3.5789 1.2056 -0.0005 5 6 4.2784 0.0083 -0.0005 6 7 5.6782 0.0131 -0.0016 7 6 3.5830 -1.2010 -0.0005 8 7 4.2831 -2.4136 0.0000 9 6 4.9460 -2.8369 1.1544 10 6 4.7921 -2.1283 2.3445 11 6 5.4442 -2.5396 3.4947 12 6 6.2533 -3.6536 3.4747 13 6 6.4183 -4.3795 2.2801 14 6 7.2426 -5.5282 2.2537 15 1 7.0341 -6.3266 1.5570 16 6 8.3286 -5.6303 3.1302 17 7 8.9024 -6.7893 3.3284 18 14 8.9589 -4.1121 4.0173 19 1 8.2788 -3.9887 5.3316 20 1 10.4239 -4.2341 4.2274 21 1 8.6751 -2.9065 3.1980 22 6 5.7537 -3.9588 1.1148 23 6 2.1961 -1.1986 -0.0057 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6532 2.1320 0.0004 28 1 4.1141 2.1437 -0.0010 29 1 6.1661 -0.8254 -0.0020 30 1 6.1604 0.8547 -0.0020 31 1 4.3079 -2.9597 -0.8013 32 1 4.1603 -1.2528 2.3699 33 1 5.3179 -1.9836 4.4120 34 1 6.7595 -3.9707 4.3745 35 1 9.6549 -6.8602 3.9363 36 1 5.8740 -4.5087 0.1930 37 1 1.6545 -2.1329 -0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313419445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:27 Heat of formation + Delta-G solvation = 24.909047 kcal Electronic energy + Delta-G solvation = -19453.291438 eV Core-core repulsion = 16579.550904 eV Total energy + Delta-G solvation = -2873.740534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95102 -39.41412 -36.69279 -35.57966 -34.99096 -32.08705 -31.53014 -31.48274 -28.82780 -26.99831 -26.45182 -23.71185 -23.00772 -22.48704 -21.32624 -19.35405 -18.02098 -17.84723 -17.69768 -17.40684 -16.61040 -16.36539 -15.37438 -15.23333 -14.77745 -14.59436 -14.50544 -14.34897 -14.25407 -13.92070 -13.54155 -13.20501 -13.01650 -12.82290 -12.73777 -12.46242 -12.34548 -11.98053 -11.60379 -11.40897 -11.13466 -11.09804 -10.77617 -9.65439 -9.50911 -8.87381 -8.37629 -8.04438 -6.51066 0.48754 0.74617 0.84612 1.05635 1.29203 1.43437 1.52076 2.15331 2.62589 2.67032 2.96694 3.12652 3.58911 4.06481 4.20369 4.31062 4.50146 4.51923 4.59377 4.65121 4.72514 4.89904 4.96973 4.97374 5.05605 5.09662 5.23392 5.30062 5.42183 5.47915 5.57026 5.77487 5.83016 5.86664 5.97515 6.03195 6.15388 6.37104 6.58104 6.69240 6.81704 6.94783 6.99210 7.09072 8.21420 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.004645 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.678340 B = 6026.004605 C = 6242.988465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.148 4.148 3 C -0.076 4.076 4 C -0.197 4.197 5 C 0.200 3.800 6 N -0.868 5.868 7 C 0.060 3.940 8 N -0.696 5.696 9 C 0.244 3.756 10 C -0.270 4.270 11 C -0.050 4.050 12 C -0.292 4.292 13 C 0.108 3.892 14 C -0.485 4.485 15 H 0.053 0.947 16 C 0.047 3.953 17 N -0.855 5.855 18 Si 0.976 3.024 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.253 1.253 22 C -0.287 4.287 23 C -0.092 4.092 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.395 0.605 30 H 0.404 0.596 31 H 0.403 0.597 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.293 0.707 36 H 0.098 0.902 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 17.052 -5.784 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.151 4.151 3 C -0.094 4.094 4 C -0.220 4.220 5 C 0.092 3.908 6 N -0.407 5.407 7 C -0.037 4.037 8 N -0.324 5.324 9 C 0.144 3.856 10 C -0.292 4.292 11 C -0.069 4.069 12 C -0.312 4.312 13 C 0.105 3.895 14 C -0.515 4.515 15 H 0.072 0.928 16 C -0.167 4.167 17 N -0.482 5.482 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.177 1.177 22 C -0.311 4.311 23 C -0.112 4.112 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.223 0.777 30 H 0.234 0.766 31 H 0.240 0.760 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.694 16.977 -5.661 20.848 hybrid contribution 1.077 -0.668 0.071 1.269 sum -9.618 16.309 -5.590 19.742 Atomic orbital electron populations 1.20672 0.89689 1.02935 1.02502 1.19823 0.97135 0.92201 1.05905 1.21073 0.93146 0.98161 0.97055 1.20736 0.94875 0.95888 1.10514 1.18314 0.84811 0.93551 0.94110 1.42514 1.02969 1.11172 1.84011 1.17180 0.90607 0.84331 1.11591 1.41721 1.57094 1.21679 1.11940 1.17558 0.89645 0.91952 0.86447 1.20139 1.11485 1.05234 0.92355 1.20691 0.94195 0.94501 0.97469 1.20987 1.10045 1.02890 0.97254 1.17557 0.90251 0.90447 0.91233 1.19474 1.11388 1.02774 1.17876 0.92837 1.26822 0.95637 0.99637 0.94555 1.69718 1.20562 1.26642 1.31277 0.85370 0.75863 0.79399 0.79285 1.18797 1.20954 1.17704 1.20511 1.10440 1.02223 0.97889 1.21185 0.92421 0.98589 0.99022 0.90895 0.92216 0.90518 0.83546 0.84284 0.77668 0.76643 0.76039 0.87587 0.86223 0.88856 0.89712 0.88355 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 10.01 71.24 0.71 -0.91 16 2 C -0.15 -3.25 5.88 -19.85 -0.12 -3.36 16 3 C -0.08 -1.51 9.69 22.28 0.22 -1.29 16 4 C -0.20 -4.34 9.89 22.38 0.22 -4.12 16 5 C 0.20 5.39 6.11 38.25 0.23 5.62 16 6 N -0.87 -22.28 9.02 -50.97 -0.46 -22.74 16 7 C 0.06 1.78 4.66 38.24 0.18 1.96 16 8 N -0.70 -22.84 4.85 -180.18 -0.87 -23.71 16 9 C 0.24 9.83 5.61 38.18 0.21 10.05 16 10 C -0.27 -10.93 9.14 22.60 0.21 -10.72 16 11 C -0.05 -2.13 10.01 22.20 0.22 -1.91 16 12 C -0.29 -14.24 7.15 22.76 0.16 -14.07 16 13 C 0.11 5.67 5.15 -21.31 -0.11 5.56 16 14 C -0.49 -27.98 9.59 23.46 0.23 -27.75 16 15 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 16 C 0.05 2.60 5.44 85.25 0.46 3.07 16 17 N -0.86 -48.12 13.93 21.82 0.30 -47.81 16 18 Si 0.98 44.46 24.43 68.60 1.68 46.13 16 19 H -0.26 -11.41 6.56 99.48 0.65 -10.76 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.25 -11.68 6.85 99.48 0.68 -11.00 16 22 C -0.29 -13.40 9.64 22.86 0.22 -13.18 16 23 C -0.09 -2.45 9.62 22.38 0.22 -2.23 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 26 H 0.08 0.98 8.08 -2.38 -0.02 0.97 16 27 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.40 11.78 7.36 -92.70 -0.68 11.09 16 30 H 0.40 8.11 8.85 -92.71 -0.82 7.29 16 31 H 0.40 12.15 8.84 -92.71 -0.82 11.33 16 32 H 0.11 4.07 6.69 -2.91 -0.02 4.05 16 33 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.09 4.59 4.30 -2.91 -0.01 4.58 16 35 H 0.29 14.79 8.30 -92.71 -0.77 14.02 16 36 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 37 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -62.33 307.31 2.63 -59.70 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -1.28 Total: 41.74 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 3.27 Total: -53.31 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -1.03 Total: -94.27 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.68 Total: 46.13 kcal Total: -62.33 2.63 -59.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.612 kcal (2) G-P(sol) polarization free energy of solvation -62.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds