Wall clock time and date at job start Mon Mar 30 2020 07:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48499 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47525 * 300.00522 * 3 2 1 6 6 H 1.48497 * 109.47114 * 60.00342 * 3 2 1 7 7 C 1.39928 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00296 * 197.90211 * 7 2 1 9 9 C 1.41407 * 119.99574 * 17.89931 * 7 2 1 10 10 C 1.40787 * 120.21173 * 24.43986 * 9 7 2 11 11 C 1.37648 * 119.89490 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32444 * 359.74387 * 11 10 9 13 13 C 1.39302 * 120.42476 * 0.51722 * 12 11 10 14 14 N 1.39686 * 119.94877 * 179.76144 * 13 12 11 15 15 C 1.46492 * 120.00395 * 359.44693 * 14 13 12 16 16 C 1.50697 * 109.47150 * 180.27620 * 15 14 13 17 17 C 1.38126 * 120.03909 * 259.99651 * 16 15 14 18 18 C 1.38257 * 120.07624 * 179.97438 * 17 16 15 19 19 C 1.38306 * 120.15186 * 0.02562 * 18 17 16 20 20 C 1.38085 * 120.07136 * 359.97438 * 19 18 17 21 21 C 1.38889 * 120.03838 * 79.72440 * 16 15 14 22 22 N 1.39674 * 120.07519 * 0.02562 * 21 16 15 23 23 C 1.38313 * 120.09478 * 359.48022 * 13 12 11 24 24 H 0.97003 * 120.00418 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.04717 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.83396 * 180.02562 * 11 10 9 27 27 H 1.08003 * 119.78913 * 180.27141 * 12 11 10 28 28 H 0.97005 * 119.99101 * 179.72361 * 14 13 12 29 29 H 1.09002 * 109.46887 * 300.27539 * 15 14 13 30 30 H 1.09003 * 109.47549 * 60.27416 * 15 14 13 31 31 H 1.07998 * 119.95906 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.92602 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.96641 * 179.97438 * 19 18 17 34 34 H 1.08011 * 120.03102 * 180.02562 * 20 19 18 35 35 H 0.96998 * 119.99693 * 0.02562 * 22 21 16 36 36 H 0.97005 * 120.00178 * 180.02562 * 22 21 16 37 37 H 1.07994 * 120.16088 * 180.23282 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0487 -1.2345 0.2869 9 6 1.3523 -2.4066 -0.3775 10 6 0.2218 -2.3603 -1.2152 11 6 -0.4118 -3.5273 -1.5776 12 6 0.0606 -4.7488 -1.1264 13 6 1.1748 -4.8098 -0.2926 14 7 1.6397 -6.0466 0.1606 15 6 0.9484 -7.2774 -0.2310 16 6 1.6405 -8.4623 0.3919 17 6 2.5167 -9.2235 -0.3569 18 6 3.1524 -10.3105 0.2139 19 6 2.9134 -10.6397 1.5357 20 6 2.0387 -9.8830 2.2900 21 6 1.4024 -8.7867 1.7212 22 7 0.5210 -8.0161 2.4828 23 6 1.8250 -3.6480 0.0824 24 1 -0.4851 0.8400 0.0004 25 1 -0.1477 -1.4106 -1.5729 26 1 -1.2787 -3.4907 -2.2207 27 1 -0.4406 -5.6594 -1.4197 28 1 2.4180 -6.0901 0.7380 29 1 -0.0853 -7.2385 0.1125 30 1 0.9671 -7.3750 -1.3165 31 1 2.7053 -8.9694 -1.3895 32 1 3.8367 -10.9043 -0.3739 33 1 3.4113 -11.4897 1.9785 34 1 1.8528 -10.1404 3.3224 35 1 0.0741 -7.2535 2.0833 36 1 0.3558 -8.2434 3.4112 37 1 2.6911 -3.6944 0.7257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313421110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:02 Heat of formation + Delta-G solvation = 40.239066 kcal Electronic energy + Delta-G solvation = -18919.574186 eV Core-core repulsion = 16046.498412 eV Total energy + Delta-G solvation = -2873.075774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62404 -37.68647 -35.15813 -34.36386 -33.17905 -31.21249 -29.72769 -28.81344 -27.55400 -25.24431 -24.78457 -22.36726 -21.33567 -20.58230 -19.94243 -17.33253 -17.12692 -16.90677 -15.87432 -15.42268 -14.79028 -14.60731 -14.23512 -14.13839 -13.81169 -13.30446 -13.09082 -12.90972 -12.63390 -12.43810 -12.07384 -11.61503 -11.34066 -11.09669 -11.04542 -10.81743 -10.65857 -10.56248 -10.37339 -9.79226 -9.30724 -9.18544 -8.82079 -8.70528 -7.50792 -7.36677 -6.69736 -6.18392 -4.29256 1.37578 1.64798 2.85857 3.11162 3.16982 3.24051 3.38710 3.79820 3.92215 3.98745 4.52413 4.73443 4.85776 4.90309 5.11839 5.38662 5.49823 5.69261 5.78026 5.88370 5.98890 6.09188 6.31647 6.34477 6.55801 6.56559 6.66702 6.90785 7.06315 7.07491 7.13634 7.36660 7.42427 7.50769 7.78368 7.80915 7.94248 8.16668 8.27343 8.53662 8.66934 8.81424 9.02224 9.14319 10.26294 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.003629 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.743478 B = 7712.851240 C = 7906.072864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.142 3.858 10 C -0.199 4.199 11 C -0.075 4.075 12 C -0.303 4.303 13 C 0.224 3.776 14 N -0.758 5.758 15 C 0.184 3.816 16 C -0.178 4.178 17 C -0.054 4.054 18 C -0.187 4.187 19 C -0.070 4.070 20 C -0.207 4.207 21 C 0.235 3.765 22 N -0.873 5.873 23 C -0.289 4.289 24 H 0.278 0.722 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.388 0.612 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.405 0.595 36 H 0.395 0.605 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -14.786 2.764 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.139 3.861 10 C -0.219 4.219 11 C -0.094 4.094 12 C -0.326 4.326 13 C 0.126 3.874 14 N -0.392 5.392 15 C 0.060 3.940 16 C -0.183 4.183 17 C -0.073 4.073 18 C -0.207 4.207 19 C -0.089 4.089 20 C -0.230 4.230 21 C 0.129 3.871 22 N -0.411 5.411 23 C -0.313 4.313 24 H 0.089 0.911 25 H 0.132 0.868 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.221 0.779 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.236 0.764 36 H 0.223 0.777 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.646 -14.735 2.662 15.064 hybrid contribution 0.343 0.922 0.525 1.115 sum 1.989 -13.814 3.187 14.315 Atomic orbital electron populations 1.69871 1.07544 1.28845 1.35506 1.25888 0.94667 1.01163 0.92263 0.86328 0.81070 0.81219 0.78460 1.18461 1.19758 1.20111 1.19582 0.98089 0.91311 1.40461 0.90636 1.17340 0.90296 0.91282 0.87226 1.21174 1.00535 0.96658 1.03581 1.20434 0.97669 0.92914 0.98399 1.19855 1.03454 0.96448 1.12863 1.17488 0.92976 0.83964 0.93013 1.44542 1.34408 1.02340 1.57906 1.19715 0.94483 0.81777 0.98072 1.19528 1.04606 1.00934 0.93269 1.20879 0.93565 0.93572 0.99299 1.20852 1.04089 0.99977 0.95796 1.20850 0.96056 0.98063 0.93963 1.20548 1.03733 0.98291 1.00432 1.17668 0.89036 0.90129 0.90299 1.42675 1.49815 1.34513 1.14106 1.20395 1.06599 0.91562 1.12763 0.91124 0.86815 0.89708 0.89745 0.77856 0.93186 0.92489 0.86074 0.86569 0.86475 0.86492 0.76425 0.77713 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.88 10.96 55.55 0.61 -20.27 16 2 C 0.08 1.99 5.14 -17.35 -0.09 1.90 16 3 Si 0.90 19.00 29.60 -169.99 -5.03 13.96 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 7 C -0.46 -12.64 9.05 -37.74 -0.34 -12.98 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.14 3.87 5.57 -106.85 -0.60 3.28 16 10 C -0.20 -5.32 8.70 -38.83 -0.34 -5.66 16 11 C -0.08 -1.81 10.02 -39.69 -0.40 -2.21 16 12 C -0.30 -6.89 9.32 -39.08 -0.36 -7.26 16 13 C 0.22 5.03 6.64 -83.86 -0.56 4.48 16 14 N -0.76 -13.65 5.72 -59.86 -0.34 -14.00 16 15 C 0.18 2.82 4.32 -5.20 -0.02 2.80 16 16 C -0.18 -2.41 5.27 -104.42 -0.55 -2.96 16 17 C -0.05 -0.67 9.66 -39.62 -0.38 -1.05 16 18 C -0.19 -2.08 10.04 -39.55 -0.40 -2.47 16 19 C -0.07 -0.75 10.04 -39.61 -0.40 -1.14 16 20 C -0.21 -2.32 9.90 -39.38 -0.39 -2.71 16 21 C 0.24 2.96 6.74 -83.79 -0.56 2.40 16 22 N -0.87 -9.87 9.00 32.41 0.29 -9.57 16 23 C -0.29 -7.26 9.63 -38.67 -0.37 -7.63 16 24 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 25 H 0.11 3.14 6.15 -52.49 -0.32 2.82 16 26 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.08 1.73 6.70 -52.48 -0.35 1.38 16 28 H 0.39 6.80 8.47 -40.82 -0.35 6.46 16 29 H 0.05 0.77 6.92 -51.93 -0.36 0.41 16 30 H 0.06 0.89 7.80 -51.93 -0.40 0.49 16 31 H 0.12 1.39 8.04 -52.49 -0.42 0.97 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.41 5.09 7.07 -40.82 -0.29 4.81 16 36 H 0.40 3.53 8.84 -40.82 -0.36 3.17 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -28.58 313.10 -10.03 -38.62 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -4.52 Total: 17.78 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -5.76 Total: -31.24 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.56 Total: -43.84 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.58 -10.03 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.857 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds