Wall clock time and date at job start Mon Mar 30 2020 07:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48499 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47525 * 300.00522 * 3 2 1 6 6 H 1.48497 * 109.47114 * 60.00342 * 3 2 1 7 7 C 1.39928 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00296 * 197.90211 * 7 2 1 9 9 C 1.41407 * 119.99574 * 17.89931 * 7 2 1 10 10 C 1.40787 * 120.21173 * 24.43986 * 9 7 2 11 11 C 1.37648 * 119.89490 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32444 * 359.74387 * 11 10 9 13 13 C 1.39302 * 120.42476 * 0.51722 * 12 11 10 14 14 N 1.39686 * 119.94877 * 179.76144 * 13 12 11 15 15 C 1.46492 * 120.00395 * 359.44693 * 14 13 12 16 16 C 1.50697 * 109.47150 * 180.27620 * 15 14 13 17 17 C 1.38126 * 120.03909 * 259.99651 * 16 15 14 18 18 C 1.38257 * 120.07624 * 179.97438 * 17 16 15 19 19 C 1.38306 * 120.15186 * 0.02562 * 18 17 16 20 20 C 1.38085 * 120.07136 * 359.97438 * 19 18 17 21 21 C 1.38889 * 120.03838 * 79.72440 * 16 15 14 22 22 N 1.39674 * 120.07519 * 0.02562 * 21 16 15 23 23 C 1.38313 * 120.09478 * 359.48022 * 13 12 11 24 24 H 0.97003 * 120.00418 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.04717 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.83396 * 180.02562 * 11 10 9 27 27 H 1.08003 * 119.78913 * 180.27141 * 12 11 10 28 28 H 0.97005 * 119.99101 * 179.72361 * 14 13 12 29 29 H 1.09002 * 109.46887 * 300.27539 * 15 14 13 30 30 H 1.09003 * 109.47549 * 60.27416 * 15 14 13 31 31 H 1.07998 * 119.95906 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.92602 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.96641 * 179.97438 * 19 18 17 34 34 H 1.08011 * 120.03102 * 180.02562 * 20 19 18 35 35 H 0.96998 * 119.99693 * 0.02562 * 22 21 16 36 36 H 0.97005 * 120.00178 * 180.02562 * 22 21 16 37 37 H 1.07994 * 120.16088 * 180.23282 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0487 -1.2345 0.2869 9 6 1.3523 -2.4066 -0.3775 10 6 0.2218 -2.3603 -1.2152 11 6 -0.4118 -3.5273 -1.5776 12 6 0.0606 -4.7488 -1.1264 13 6 1.1748 -4.8098 -0.2926 14 7 1.6397 -6.0466 0.1606 15 6 0.9484 -7.2774 -0.2310 16 6 1.6405 -8.4623 0.3919 17 6 2.5167 -9.2235 -0.3569 18 6 3.1524 -10.3105 0.2139 19 6 2.9134 -10.6397 1.5357 20 6 2.0387 -9.8830 2.2900 21 6 1.4024 -8.7867 1.7212 22 7 0.5210 -8.0161 2.4828 23 6 1.8250 -3.6480 0.0824 24 1 -0.4851 0.8400 0.0004 25 1 -0.1477 -1.4106 -1.5729 26 1 -1.2787 -3.4907 -2.2207 27 1 -0.4406 -5.6594 -1.4197 28 1 2.4180 -6.0901 0.7380 29 1 -0.0853 -7.2385 0.1125 30 1 0.9671 -7.3750 -1.3165 31 1 2.7053 -8.9694 -1.3895 32 1 3.8367 -10.9043 -0.3739 33 1 3.4113 -11.4897 1.9785 34 1 1.8528 -10.1404 3.3224 35 1 0.0741 -7.2535 2.0833 36 1 0.3558 -8.2434 3.4112 37 1 2.6911 -3.6944 0.7257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313421110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:02 Heat of formation + Delta-G solvation = 24.096972 kcal Electronic energy + Delta-G solvation = -18920.274160 eV Core-core repulsion = 16046.498412 eV Total energy + Delta-G solvation = -2873.775748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61271 -39.44700 -36.71594 -35.38287 -34.88428 -32.45521 -31.66257 -29.88955 -28.96179 -27.14346 -26.16732 -23.31321 -22.77368 -22.25761 -21.51492 -19.17403 -18.08297 -17.82396 -17.36371 -17.09950 -16.34611 -16.10962 -15.80818 -15.15666 -14.83158 -14.64189 -14.50307 -14.38168 -14.00381 -13.85436 -13.62114 -13.37817 -12.88197 -12.76897 -12.52213 -12.14529 -12.11112 -11.80620 -11.66031 -11.52962 -11.20535 -11.05453 -10.46831 -9.74749 -9.33477 -8.61120 -8.40817 -7.93627 -6.32435 0.45677 0.75834 1.04519 1.34735 1.39293 1.53858 1.58897 2.22945 2.72837 2.80629 3.03575 3.20138 3.85263 3.85676 3.99424 4.28137 4.43732 4.50139 4.60779 4.65421 4.73450 4.80596 5.00116 5.14011 5.16947 5.17354 5.23712 5.41215 5.42634 5.59613 5.67392 5.76819 5.94251 6.03195 6.05144 6.20735 6.31641 6.58720 6.63511 6.89885 6.93454 7.02029 7.03561 7.24669 8.37409 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.003629 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.743478 B = 7712.851240 C = 7906.072864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.114 3.886 10 C -0.232 4.232 11 C -0.074 4.074 12 C -0.303 4.303 13 C 0.236 3.764 14 N -0.745 5.745 15 C 0.187 3.813 16 C -0.198 4.198 17 C -0.064 4.064 18 C -0.191 4.191 19 C -0.068 4.068 20 C -0.212 4.212 21 C 0.224 3.776 22 N -0.871 5.871 23 C -0.312 4.312 24 H 0.287 0.713 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.392 0.608 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.399 0.601 36 H 0.406 0.594 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -16.386 3.190 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.088 0.912 9 C 0.111 3.889 10 C -0.252 4.252 11 C -0.093 4.093 12 C -0.326 4.326 13 C 0.134 3.866 14 N -0.377 5.377 15 C 0.064 3.936 16 C -0.204 4.204 17 C -0.083 4.083 18 C -0.211 4.211 19 C -0.086 4.086 20 C -0.235 4.235 21 C 0.117 3.883 22 N -0.409 5.409 23 C -0.337 4.337 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.225 0.775 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.228 0.772 36 H 0.235 0.765 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.182 -16.394 3.109 16.829 hybrid contribution 0.162 1.194 0.420 1.276 sum 2.343 -15.200 3.530 15.780 Atomic orbital electron populations 1.69922 1.08986 1.30300 1.35673 1.26745 0.95475 1.04418 0.91178 0.85186 0.79363 0.76283 0.78988 1.18358 1.18801 1.18941 1.19822 0.98201 0.92741 1.42575 0.91159 1.17688 0.91008 0.92352 0.87837 1.21101 1.01774 0.96924 1.05447 1.20725 0.97915 0.92638 0.98046 1.20144 1.03331 0.96954 1.12216 1.17526 0.92229 0.84922 0.91874 1.44602 1.34223 1.01899 1.56937 1.19769 0.94520 0.81184 0.98153 1.19405 1.06018 1.00896 0.94050 1.21044 0.93582 0.94082 0.99621 1.21146 1.04006 0.99601 0.96380 1.21243 0.95291 0.98408 0.93706 1.20851 1.03418 0.97719 1.01509 1.17859 0.89450 0.90793 0.90181 1.42662 1.49508 1.34105 1.14644 1.20492 1.07302 0.92128 1.13737 0.90269 0.88607 0.87404 0.87042 0.77484 0.93046 0.92539 0.85703 0.84522 0.83663 0.84567 0.77246 0.76477 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.51 10.96 21.82 0.24 -44.27 16 2 C 0.04 1.92 5.14 85.25 0.44 2.36 16 3 Si 0.98 39.48 29.60 68.60 2.03 41.51 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.50 -28.49 9.05 23.46 0.21 -28.28 16 8 H 0.07 3.87 7.91 -2.92 -0.02 3.85 16 9 C 0.11 6.47 5.57 -21.31 -0.12 6.36 16 10 C -0.23 -12.80 8.70 22.75 0.20 -12.60 16 11 C -0.07 -3.60 10.02 22.20 0.22 -3.37 16 12 C -0.30 -13.54 9.32 22.59 0.21 -13.33 16 13 C 0.24 10.56 6.64 38.16 0.25 10.81 16 14 N -0.74 -26.24 5.72 -343.31 -1.96 -28.21 16 15 C 0.19 5.50 4.32 85.63 0.37 5.87 16 16 C -0.20 -5.07 5.27 -19.74 -0.10 -5.18 16 17 C -0.06 -1.48 9.66 22.25 0.21 -1.27 16 18 C -0.19 -3.73 10.04 22.29 0.22 -3.50 16 19 C -0.07 -1.21 10.04 22.25 0.22 -0.99 16 20 C -0.21 -4.19 9.90 22.40 0.22 -3.97 16 21 C 0.22 5.24 6.74 38.21 0.26 5.50 16 22 N -0.87 -18.49 9.00 -51.37 -0.46 -18.95 16 23 C -0.31 -16.09 9.63 22.86 0.22 -15.87 16 24 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 25 H 0.10 5.53 6.15 -2.91 -0.02 5.51 16 26 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.11 4.33 6.70 -2.91 -0.02 4.31 16 28 H 0.39 13.47 8.47 -92.70 -0.79 12.68 16 29 H 0.05 1.51 6.92 -2.39 -0.02 1.49 16 30 H 0.06 1.68 7.80 -2.39 -0.02 1.66 16 31 H 0.13 2.69 8.04 -2.91 -0.02 2.67 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.14 2.10 8.06 -2.90 -0.02 2.07 16 35 H 0.40 9.63 7.07 -92.71 -0.66 8.97 16 36 H 0.41 6.62 8.84 -92.70 -0.82 5.80 16 37 H 0.09 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -62.76 313.10 1.74 -61.01 By element: Atomic # 1 Polarization: 47.52 SS G_CDS: -1.14 Total: 46.38 kcal Atomic # 6 Polarization: -60.52 SS G_CDS: 3.04 Total: -57.47 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -2.19 Total: -91.43 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -62.76 1.74 -61.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.111 kcal (2) G-P(sol) polarization free energy of solvation -62.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds