Wall clock time and date at job start Mon Mar 30 2020 07:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38228 * 119.61882 * 2 1 4 4 C 1.38637 * 119.16145 * 179.97438 * 3 2 1 5 5 C 1.38663 * 118.41816 * 359.97438 * 4 3 2 6 6 C 1.38175 * 119.16811 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.61833 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46993 * 95.00196 * 7 6 5 9 9 C 1.39683 * 120.00190 * 180.02562 * 8 7 6 10 10 C 1.39345 * 119.94764 * 359.72423 * 9 8 7 11 11 C 1.38479 * 120.42101 * 179.72334 * 10 9 8 12 12 C 1.37689 * 120.32509 * 0.55098 * 11 10 9 13 13 C 1.40745 * 119.89153 * 359.72701 * 12 11 10 14 14 C 1.41416 * 120.20408 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99949 * 204.44886 * 14 13 12 16 16 C 1.39926 * 120.00212 * 24.45141 * 14 13 12 17 17 N 1.30831 * 120.00295 * 17.88965 * 16 14 13 18 18 Si 1.86797 * 120.00020 * 197.89601 * 16 14 13 19 19 H 1.48493 * 109.47555 * 59.99479 * 18 16 14 20 20 H 1.48500 * 109.47042 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47121 * 299.99235 * 18 16 14 22 22 C 1.38268 * 119.95636 * 179.97438 * 9 8 7 23 23 N 1.31860 * 119.62033 * 180.25658 * 2 1 3 24 24 H 1.09005 * 109.47452 * 90.00173 * 1 2 3 25 25 H 1.09006 * 109.46932 * 209.99940 * 1 2 3 26 26 H 1.08992 * 109.47340 * 329.99793 * 1 2 3 27 27 H 1.07994 * 120.41926 * 359.95380 * 3 2 1 28 28 H 1.07998 * 120.78506 * 179.97438 * 4 3 2 29 29 H 1.08009 * 120.41425 * 180.02562 * 5 4 3 30 30 H 1.09007 * 109.46880 * 214.99889 * 7 6 5 31 31 H 1.09002 * 109.46951 * 334.99807 * 7 6 5 32 32 H 0.97003 * 120.00215 * 359.97438 * 8 7 6 33 33 H 1.08004 * 119.78617 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.83395 * 180.27913 * 11 10 9 35 35 H 1.08004 * 120.04990 * 179.74902 * 12 11 10 36 36 H 0.96998 * 120.00779 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.16280 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2266 -0.0342 0.0016 6 6 3.4766 -1.1947 0.0016 7 6 4.1728 -2.5314 0.0033 8 7 4.2899 -3.0191 1.3797 9 6 4.9047 -4.2470 1.6357 10 6 5.4011 -5.0098 0.5805 11 6 6.0174 -6.2258 0.8235 12 6 6.1364 -6.6999 2.1107 13 6 5.6347 -5.9432 3.1861 14 6 5.7538 -6.4236 4.5108 15 1 5.0645 -6.0873 5.2712 16 6 6.7649 -7.3344 4.8365 17 7 7.7958 -7.4785 4.0439 18 14 6.6426 -8.3449 6.4028 19 1 5.4118 -9.1746 6.3618 20 1 7.8309 -9.2283 6.5159 21 1 6.5878 -7.4356 7.5755 22 6 5.0152 -4.7062 2.9352 23 7 2.1587 -1.1463 -0.0051 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6508 2.1373 -0.0008 28 1 4.1366 2.1140 0.0001 29 1 5.3057 -0.0804 0.0025 30 1 3.5946 -3.2429 -0.5863 31 1 5.1671 -2.4237 -0.4300 32 1 3.9412 -2.4890 2.1135 33 1 5.3088 -4.6479 -0.4330 34 1 6.4027 -6.8071 -0.0011 35 1 6.6144 -7.6508 2.2948 36 1 8.4965 -8.1102 4.2694 37 1 4.6277 -4.1175 3.7535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313427107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:37 Heat of formation + Delta-G solvation = 48.806624 kcal Electronic energy + Delta-G solvation = -18647.021500 eV Core-core repulsion = 15774.317243 eV Total energy + Delta-G solvation = -2872.704257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42056 -37.75897 -35.29813 -33.50562 -32.92744 -32.12556 -29.72283 -28.85260 -27.34109 -25.36312 -25.07123 -22.48139 -21.93362 -20.64466 -20.00815 -17.32239 -16.61331 -16.50841 -15.71149 -15.42945 -14.82699 -14.54443 -14.44038 -14.00588 -13.60901 -13.18167 -12.98187 -12.74773 -12.61868 -12.36845 -12.32821 -12.05819 -11.64603 -11.47567 -11.08512 -11.02089 -10.54943 -10.40008 -9.99096 -9.75439 -9.49252 -9.27972 -9.16865 -8.96820 -8.69466 -7.33999 -6.66996 -6.17358 -4.26684 0.93001 1.15675 2.91015 3.11870 3.15162 3.27310 3.41662 3.55210 4.00475 4.05717 4.46253 4.56483 4.66610 4.76372 4.90504 5.00483 5.30543 5.39310 5.42025 5.48408 5.68075 5.85510 5.88684 5.97167 6.02510 6.17934 6.36505 6.56802 6.60574 7.07623 7.08509 7.16074 7.38561 7.43292 7.81734 7.94291 7.96223 8.18606 8.29080 8.54801 8.65232 8.83069 9.04465 9.16336 10.29157 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.003403 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.895789 B = 8226.138243 C = 8522.067351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.125 3.875 3 C -0.176 4.176 4 C -0.075 4.075 5 C -0.163 4.163 6 C 0.126 3.874 7 C 0.188 3.812 8 N -0.755 5.755 9 C 0.226 3.774 10 C -0.302 4.302 11 C -0.074 4.074 12 C -0.199 4.199 13 C 0.142 3.858 14 C -0.466 4.466 15 H 0.075 0.925 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.906 3.094 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.288 4.288 23 N -0.470 5.470 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.388 0.612 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.279 0.721 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 13.980 -7.004 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.014 4.014 3 C -0.196 4.196 4 C -0.101 4.101 5 C -0.183 4.183 6 C -0.012 4.012 7 C 0.062 3.938 8 N -0.389 5.389 9 C 0.128 3.872 10 C -0.325 4.325 11 C -0.094 4.094 12 C -0.219 4.219 13 C 0.139 3.861 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.139 4.139 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.312 4.312 23 N -0.180 5.180 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.221 0.779 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.956 13.064 -7.238 16.922 hybrid contribution 0.490 0.673 0.939 1.255 sum -7.466 13.738 -6.299 16.856 Atomic orbital electron populations 1.20711 0.88861 1.03514 1.03007 1.21339 0.97078 0.88259 0.94690 1.21955 0.95012 0.99201 1.03407 1.21584 0.94456 0.98276 0.95748 1.22050 1.01736 0.92785 1.01734 1.21429 0.89306 0.95712 0.94770 1.19878 0.97865 0.89248 0.86819 1.44260 1.68157 1.21584 1.04887 1.17446 0.91916 0.84016 0.93823 1.19859 1.17171 1.00113 0.95311 1.20433 0.97845 0.94953 0.96127 1.21176 1.08112 1.01594 0.91058 1.17320 0.87090 0.88552 0.93122 1.19520 1.12524 1.22129 0.95375 0.90701 1.25881 0.94006 0.95800 0.98262 1.69853 1.06030 1.29359 1.36556 0.86416 0.78617 0.80005 0.81906 1.18875 1.20430 1.19125 1.20385 1.18259 0.99824 0.92733 1.67399 1.09525 1.29347 1.11713 0.90477 0.90293 0.90823 0.84964 0.84781 0.84498 0.91381 0.91568 0.77898 0.89644 0.89613 0.86763 0.91012 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 36.00 0.37 -0.54 16 2 C 0.12 1.47 6.78 -82.59 -0.56 0.91 16 3 C -0.18 -1.72 9.74 -39.44 -0.38 -2.11 16 4 C -0.07 -0.74 10.18 -39.28 -0.40 -1.14 16 5 C -0.16 -1.93 9.72 -39.45 -0.38 -2.32 16 6 C 0.13 1.80 6.15 -82.59 -0.51 1.30 16 7 C 0.19 3.02 5.21 -5.19 -0.03 3.00 16 8 N -0.75 -14.43 5.72 -59.86 -0.34 -14.77 16 9 C 0.23 5.26 6.64 -83.86 -0.56 4.71 16 10 C -0.30 -7.02 9.32 -39.08 -0.36 -7.39 16 11 C -0.07 -1.83 10.02 -39.69 -0.40 -2.22 16 12 C -0.20 -5.39 8.70 -38.84 -0.34 -5.73 16 13 C 0.14 3.95 5.57 -106.85 -0.60 3.35 16 14 C -0.47 -12.81 9.05 -37.74 -0.34 -13.15 16 15 H 0.07 1.98 7.91 -52.48 -0.41 1.57 16 16 C 0.08 2.02 5.14 -17.35 -0.09 1.93 16 17 N -0.79 -21.08 10.96 55.55 0.61 -20.47 16 18 Si 0.91 19.17 29.59 -169.99 -5.03 14.13 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.29 -7.40 9.63 -38.68 -0.37 -7.77 16 23 N -0.47 -6.91 10.19 -5.74 -0.06 -6.97 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 30 H 0.07 1.16 7.93 -51.93 -0.41 0.74 16 31 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 32 H 0.39 7.13 8.47 -40.82 -0.35 6.78 16 33 H 0.09 1.78 6.70 -52.48 -0.35 1.43 16 34 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.11 3.18 6.15 -52.48 -0.32 2.86 16 36 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -30.18 317.76 -9.75 -39.93 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.77 Total: 10.51 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -4.95 Total: -27.16 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.21 Total: -42.21 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.18 -9.75 -39.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.736 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds