Wall clock time and date at job start Mon Mar 30 2020 07:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38228 * 119.61882 * 2 1 4 4 C 1.38637 * 119.16145 * 179.97438 * 3 2 1 5 5 C 1.38663 * 118.41816 * 359.97438 * 4 3 2 6 6 C 1.38175 * 119.16811 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.61833 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46993 * 95.00196 * 7 6 5 9 9 C 1.39683 * 120.00190 * 180.02562 * 8 7 6 10 10 C 1.39345 * 119.94764 * 359.72423 * 9 8 7 11 11 C 1.38479 * 120.42101 * 179.72334 * 10 9 8 12 12 C 1.37689 * 120.32509 * 0.55098 * 11 10 9 13 13 C 1.40745 * 119.89153 * 359.72701 * 12 11 10 14 14 C 1.41416 * 120.20408 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99949 * 204.44886 * 14 13 12 16 16 C 1.39926 * 120.00212 * 24.45141 * 14 13 12 17 17 N 1.30831 * 120.00295 * 17.88965 * 16 14 13 18 18 Si 1.86797 * 120.00020 * 197.89601 * 16 14 13 19 19 H 1.48493 * 109.47555 * 59.99479 * 18 16 14 20 20 H 1.48500 * 109.47042 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47121 * 299.99235 * 18 16 14 22 22 C 1.38268 * 119.95636 * 179.97438 * 9 8 7 23 23 N 1.31860 * 119.62033 * 180.25658 * 2 1 3 24 24 H 1.09005 * 109.47452 * 90.00173 * 1 2 3 25 25 H 1.09006 * 109.46932 * 209.99940 * 1 2 3 26 26 H 1.08992 * 109.47340 * 329.99793 * 1 2 3 27 27 H 1.07994 * 120.41926 * 359.95380 * 3 2 1 28 28 H 1.07998 * 120.78506 * 179.97438 * 4 3 2 29 29 H 1.08009 * 120.41425 * 180.02562 * 5 4 3 30 30 H 1.09007 * 109.46880 * 214.99889 * 7 6 5 31 31 H 1.09002 * 109.46951 * 334.99807 * 7 6 5 32 32 H 0.97003 * 120.00215 * 359.97438 * 8 7 6 33 33 H 1.08004 * 119.78617 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.83395 * 180.27913 * 11 10 9 35 35 H 1.08004 * 120.04990 * 179.74902 * 12 11 10 36 36 H 0.96998 * 120.00779 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.16280 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2266 -0.0342 0.0016 6 6 3.4766 -1.1947 0.0016 7 6 4.1728 -2.5314 0.0033 8 7 4.2899 -3.0191 1.3797 9 6 4.9047 -4.2470 1.6357 10 6 5.4011 -5.0098 0.5805 11 6 6.0174 -6.2258 0.8235 12 6 6.1364 -6.6999 2.1107 13 6 5.6347 -5.9432 3.1861 14 6 5.7538 -6.4236 4.5108 15 1 5.0645 -6.0873 5.2712 16 6 6.7649 -7.3344 4.8365 17 7 7.7958 -7.4785 4.0439 18 14 6.6426 -8.3449 6.4028 19 1 5.4118 -9.1746 6.3618 20 1 7.8309 -9.2283 6.5159 21 1 6.5878 -7.4356 7.5755 22 6 5.0152 -4.7062 2.9352 23 7 2.1587 -1.1463 -0.0051 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6508 2.1373 -0.0008 28 1 4.1366 2.1140 0.0001 29 1 5.3057 -0.0804 0.0025 30 1 3.5946 -3.2429 -0.5863 31 1 5.1671 -2.4237 -0.4300 32 1 3.9412 -2.4890 2.1135 33 1 5.3088 -4.6479 -0.4330 34 1 6.4027 -6.8071 -0.0011 35 1 6.6144 -7.6508 2.2948 36 1 8.4965 -8.1102 4.2694 37 1 4.6277 -4.1175 3.7535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313427107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:36 Heat of formation + Delta-G solvation = 31.610677 kcal Electronic energy + Delta-G solvation = -18647.767172 eV Core-core repulsion = 15774.317243 eV Total energy + Delta-G solvation = -2873.449929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32996 -39.59458 -36.90159 -35.16289 -33.88520 -33.32484 -31.69014 -30.25016 -28.45629 -27.15802 -26.58414 -23.45026 -23.04639 -22.46640 -21.79356 -19.20772 -17.70652 -17.39426 -17.33466 -16.88559 -16.38573 -16.15286 -15.63173 -15.23783 -14.85690 -14.68579 -14.44909 -14.01975 -13.90477 -13.75631 -13.38668 -13.25216 -13.03756 -12.88645 -12.78221 -12.52408 -12.45201 -12.11537 -11.70081 -11.22303 -11.06580 -10.82448 -10.52369 -10.39312 -9.85619 -9.34500 -8.60828 -7.98477 -6.32877 0.04014 0.32463 1.05279 1.33791 1.39326 1.50862 1.60676 2.23111 2.52396 2.80322 3.04601 3.18972 3.68758 3.84377 3.88514 4.14255 4.17812 4.45885 4.49296 4.53726 4.66309 4.68835 4.73507 4.78284 4.82473 5.12280 5.16211 5.18481 5.20408 5.21956 5.27607 5.40258 5.55714 5.76808 5.91556 6.01379 6.19300 6.29695 6.60681 6.87004 6.95065 7.02102 7.04394 7.20695 8.37515 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.003403 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.895789 B = 8226.138243 C = 8522.067351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.105 3.895 3 C -0.165 4.165 4 C -0.072 4.072 5 C -0.167 4.167 6 C 0.100 3.900 7 C 0.189 3.811 8 N -0.746 5.746 9 C 0.234 3.766 10 C -0.303 4.303 11 C -0.073 4.073 12 C -0.231 4.231 13 C 0.114 3.886 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.037 3.963 17 N -0.822 5.822 18 Si 0.983 3.017 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.313 4.313 23 N -0.506 5.506 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.169 0.831 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.391 0.609 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.288 0.712 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 16.041 -7.412 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.033 4.033 3 C -0.185 4.185 4 C -0.097 4.097 5 C -0.188 4.188 6 C -0.037 4.037 7 C 0.065 3.935 8 N -0.378 5.378 9 C 0.133 3.867 10 C -0.326 4.326 11 C -0.092 4.092 12 C -0.252 4.252 13 C 0.112 3.888 14 C -0.535 4.535 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.448 5.448 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.189 1.189 21 H -0.184 1.184 22 C -0.337 4.337 23 N -0.217 5.217 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.186 0.814 28 H 0.187 0.813 29 H 0.165 0.835 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.224 0.776 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.490 15.164 -7.675 18.998 hybrid contribution 0.576 0.211 0.936 1.120 sum -7.913 15.375 -6.739 18.559 Atomic orbital electron populations 1.20789 0.87101 1.04074 1.03894 1.21899 0.98455 0.88329 0.94644 1.22380 0.95238 0.99835 1.01017 1.22019 0.94836 0.98716 0.94148 1.22211 1.02277 0.92889 1.01410 1.21147 0.89655 0.95319 0.97559 1.19931 0.98611 0.90438 0.84569 1.44327 1.66728 1.20074 1.06672 1.17520 0.90904 0.85211 0.93021 1.20167 1.16264 0.99576 0.96617 1.20737 0.97043 0.95517 0.95912 1.21123 1.10222 1.01620 0.92212 1.17679 0.87883 0.89523 0.93759 1.19786 1.13762 1.24336 0.95592 0.91075 1.26759 0.92955 0.96169 1.01932 1.69906 1.06607 1.29847 1.38439 0.85260 0.78966 0.78209 0.77261 1.18600 1.18935 1.18399 1.20493 1.19405 0.99813 0.93991 1.67305 1.09940 1.31410 1.13056 0.89360 0.91865 0.88117 0.81356 0.81315 0.83492 0.92524 0.90475 0.77563 0.86872 0.87106 0.88382 0.90174 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 10.17 71.23 0.72 -0.84 16 2 C 0.10 2.28 6.78 42.55 0.29 2.56 16 3 C -0.17 -2.65 9.74 22.36 0.22 -2.43 16 4 C -0.07 -1.16 10.18 22.47 0.23 -0.94 16 5 C -0.17 -3.64 9.72 22.36 0.22 -3.43 16 6 C 0.10 2.79 6.15 42.54 0.26 3.05 16 7 C 0.19 6.00 5.21 85.64 0.45 6.45 16 8 N -0.75 -28.47 5.72 -343.28 -1.96 -30.44 16 9 C 0.23 11.01 6.64 38.16 0.25 11.26 16 10 C -0.30 -14.01 9.32 22.59 0.21 -13.80 16 11 C -0.07 -3.61 10.02 22.20 0.22 -3.39 16 12 C -0.23 -12.96 8.70 22.75 0.20 -12.76 16 13 C 0.11 6.62 5.57 -21.31 -0.12 6.50 16 14 C -0.51 -28.93 9.05 23.46 0.21 -28.72 16 15 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 16 C 0.04 1.95 5.14 85.25 0.44 2.39 16 17 N -0.82 -44.83 10.96 21.82 0.24 -44.59 16 18 Si 0.98 39.77 29.59 68.60 2.03 41.80 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 C -0.31 -16.63 9.63 22.85 0.22 -16.41 16 23 N -0.51 -14.56 10.19 -172.08 -1.75 -16.31 16 24 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 27 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 28 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.06 1.92 7.93 -2.38 -0.02 1.90 16 31 H 0.08 2.26 7.85 -2.39 -0.02 2.24 16 32 H 0.39 14.45 8.47 -92.71 -0.79 13.67 16 33 H 0.11 4.54 6.70 -2.91 -0.02 4.52 16 34 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 35 H 0.10 5.71 6.15 -2.91 -0.02 5.69 16 36 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 37 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -67.94 317.76 2.87 -65.07 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.29 Total: 34.96 kcal Atomic # 6 Polarization: -54.51 SS G_CDS: 4.02 Total: -50.49 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -3.48 Total: -91.34 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -67.94 2.87 -65.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.685 kcal (2) G-P(sol) polarization free energy of solvation -67.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds