Wall clock time and date at job start Mon Mar 30 2020 07:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86807 * 120.00166 * 2 1 4 4 H 1.48497 * 109.46892 * 270.00015 * 3 2 1 5 5 H 1.48499 * 109.46496 * 29.99494 * 3 2 1 6 6 H 1.48497 * 109.47240 * 149.99673 * 3 2 1 7 7 C 1.39935 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 197.88627 * 7 2 1 9 9 C 1.41406 * 119.99839 * 17.89434 * 7 2 1 10 10 C 1.40789 * 120.20533 * 24.42799 * 9 7 2 11 11 C 1.37653 * 119.89099 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32814 * 359.75048 * 11 10 9 13 13 C 1.39298 * 120.41953 * 0.51069 * 12 11 10 14 14 N 1.39682 * 119.95111 * 179.76494 * 13 12 11 15 15 C 1.46506 * 119.99998 * 359.72311 * 14 13 12 16 16 C 1.52997 * 109.46934 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47191 * 180.02562 * 16 15 14 18 18 C 1.38223 * 119.61981 * 124.97317 * 17 16 15 19 19 C 1.38632 * 119.15644 * 179.79130 * 18 17 16 20 20 C 1.38675 * 118.42165 * 0.47922 * 19 18 17 21 21 C 1.38172 * 119.16181 * 359.50124 * 20 19 18 22 22 N 1.31854 * 119.61470 * 305.00331 * 17 16 15 23 23 C 1.38316 * 120.09866 * 359.48640 * 13 12 11 24 24 H 0.96990 * 120.00388 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.05489 * 0.05273 * 10 9 7 26 26 H 1.07996 * 119.83379 * 180.02562 * 11 10 9 27 27 H 1.07997 * 119.79352 * 180.27820 * 12 11 10 28 28 H 0.97003 * 120.00596 * 179.72161 * 14 13 12 29 29 H 1.08999 * 109.46753 * 60.00027 * 15 14 13 30 30 H 1.08997 * 109.47021 * 299.99933 * 15 14 13 31 31 H 1.08999 * 109.47398 * 60.00398 * 16 15 14 32 32 H 1.09006 * 109.47317 * 299.99586 * 16 15 14 33 33 H 1.07995 * 120.42268 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.78486 * 180.23472 * 19 18 17 35 35 H 1.08002 * 120.41337 * 179.78408 * 20 19 18 36 36 H 1.08004 * 119.61539 * 180.25161 * 21 20 19 37 37 H 1.08002 * 120.16251 * 180.23052 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2878 9 6 1.3523 -2.4070 -0.3752 10 6 0.2216 -2.3614 -1.2127 11 6 -0.4120 -3.5288 -1.5741 12 6 0.0604 -4.7499 -1.1218 13 6 1.1748 -4.8101 -0.2883 14 7 1.6399 -6.0465 0.1660 15 6 0.9520 -7.2781 -0.2294 16 6 1.6578 -8.4809 0.3999 17 6 0.9507 -9.7479 -0.0073 18 6 1.6644 -10.7632 -0.6159 19 6 1.0052 -11.9264 -0.9825 20 6 -0.3553 -12.0211 -0.7313 21 6 -1.0021 -10.9649 -0.1188 22 7 -0.3418 -9.8748 0.2206 23 6 1.8250 -3.6480 0.0856 24 1 -0.4850 0.8399 -0.0004 25 1 -0.1478 -1.4121 -1.5715 26 1 -1.2791 -3.4928 -2.2169 27 1 -0.4407 -5.6608 -1.4143 28 1 2.4183 -6.0896 0.7432 29 1 0.9711 -7.3723 -1.3152 30 1 -0.0818 -7.2433 0.1142 31 1 1.6384 -8.3864 1.4856 32 1 2.6918 -8.5160 0.0566 33 1 2.7229 -10.6534 -0.8000 34 1 1.5378 -12.7377 -1.4562 35 1 -0.9015 -12.9112 -1.0069 36 1 -2.0607 -11.0325 0.0840 37 1 2.6913 -3.6938 0.7289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313434919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:53 Heat of formation + Delta-G solvation = 47.900838 kcal Electronic energy + Delta-G solvation = -18464.064850 eV Core-core repulsion = 15591.321315 eV Total energy + Delta-G solvation = -2872.743535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.36986 -37.80070 -35.55804 -33.63168 -32.64530 -32.28899 -29.72199 -29.35869 -26.73887 -25.15531 -23.93561 -23.39079 -21.65392 -20.51619 -19.92690 -17.40549 -16.90193 -16.42834 -15.69968 -15.32897 -15.28509 -14.66465 -14.47915 -14.21307 -13.80751 -13.48954 -13.15373 -12.77278 -12.48769 -12.07074 -11.95529 -11.77679 -11.67674 -11.33655 -11.03703 -10.91752 -10.48787 -10.34267 -10.06798 -9.71931 -9.54893 -9.24520 -9.14307 -9.13414 -8.64989 -7.31843 -6.65182 -6.13739 -4.24879 0.91003 1.08855 2.90848 3.13424 3.17058 3.28945 3.44025 3.60074 4.00131 4.04686 4.29234 4.62208 4.72787 4.78163 4.85584 4.91702 5.24483 5.26265 5.35586 5.52163 5.69636 5.87095 5.91363 5.95976 6.20314 6.31589 6.39777 6.51476 6.63925 7.10405 7.12816 7.17974 7.41341 7.46842 7.85308 7.85605 7.98511 8.21191 8.31820 8.57274 8.71407 8.85515 9.06230 9.19014 10.31019 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.052443 B = 0.002996 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.781351 B = 9344.913782 C = 9658.733018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.141 3.859 10 C -0.199 4.199 11 C -0.075 4.075 12 C -0.300 4.300 13 C 0.225 3.775 14 N -0.765 5.765 15 C 0.147 3.853 16 C -0.082 4.082 17 C 0.140 3.860 18 C -0.170 4.170 19 C -0.075 4.075 20 C -0.183 4.183 21 C 0.103 3.897 22 N -0.477 5.477 23 C -0.289 4.289 24 H 0.278 0.722 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.387 0.613 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.156 0.844 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -18.847 -1.008 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.138 3.862 10 C -0.220 4.220 11 C -0.095 4.095 12 C -0.323 4.323 13 C 0.126 3.874 14 N -0.399 5.399 15 C 0.022 3.978 16 C -0.120 4.120 17 C 0.002 3.998 18 C -0.190 4.190 19 C -0.101 4.101 20 C -0.203 4.203 21 C -0.054 4.054 22 N -0.186 5.186 23 C -0.313 4.313 24 H 0.089 0.911 25 H 0.132 0.868 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.220 0.780 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.699 -18.114 -0.677 18.140 hybrid contribution 0.976 -0.110 -0.193 1.001 sum 1.675 -18.224 -0.870 18.322 Atomic orbital electron populations 1.69863 1.07530 1.28905 1.35498 1.25889 0.94668 1.01128 0.92325 0.86362 0.80493 0.80876 0.79212 1.19365 1.20442 1.18733 1.19543 0.98055 0.91280 1.40645 0.90669 1.17336 0.90346 0.91292 0.87260 1.21174 1.00564 0.96621 1.03609 1.20440 0.97654 0.92908 0.98448 1.19880 1.03251 0.96510 1.12646 1.17455 0.93014 0.83931 0.92973 1.44404 1.34557 1.02926 1.57974 1.20899 0.96440 0.82586 0.97917 1.20747 0.98602 0.90527 1.02140 1.21164 0.89910 0.95184 0.93540 1.22014 1.01564 0.94539 1.00909 1.21579 0.94580 0.97377 0.96555 1.22133 0.95572 1.00801 1.01799 1.22801 1.00257 0.88515 0.93829 1.67528 1.08829 1.24559 1.17712 1.20390 1.06647 0.91544 1.12744 0.91087 0.86795 0.89701 0.89710 0.78029 0.93598 0.91979 0.89438 0.89935 0.84744 0.84929 0.84928 0.82716 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.26 10.95 55.55 0.61 -20.66 16 2 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 3 Si 0.91 19.22 29.60 -169.99 -5.03 14.19 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.47 -12.81 9.05 -37.74 -0.34 -13.15 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.14 3.92 5.57 -106.85 -0.60 3.33 16 10 C -0.20 -5.46 8.69 -38.83 -0.34 -5.80 16 11 C -0.08 -1.89 10.02 -39.69 -0.40 -2.29 16 12 C -0.30 -7.20 9.32 -39.08 -0.36 -7.56 16 13 C 0.22 5.27 6.64 -83.86 -0.56 4.72 16 14 N -0.76 -14.24 5.73 -58.68 -0.34 -14.57 16 15 C 0.15 2.36 4.76 -4.04 -0.02 2.34 16 16 C -0.08 -0.99 5.73 -27.88 -0.16 -1.15 16 17 C 0.14 1.69 6.18 -82.58 -0.51 1.18 16 18 C -0.17 -1.65 9.71 -39.44 -0.38 -2.03 16 19 C -0.07 -0.62 10.18 -39.27 -0.40 -1.02 16 20 C -0.18 -1.52 10.11 -39.44 -0.40 -1.92 16 21 C 0.10 1.06 11.18 -17.55 -0.20 0.87 16 22 N -0.48 -6.28 9.88 -9.47 -0.09 -6.37 16 23 C -0.29 -7.41 9.63 -38.68 -0.37 -7.79 16 24 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 25 H 0.11 3.21 6.15 -52.49 -0.32 2.88 16 26 H 0.08 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.08 1.88 6.70 -52.49 -0.35 1.53 16 28 H 0.39 6.38 8.48 -40.82 -0.35 6.03 16 29 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 30 H 0.06 1.11 7.76 -51.93 -0.40 0.71 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 33 H 0.13 1.02 7.95 -52.49 -0.42 0.60 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 37 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -30.98 316.87 -9.95 -40.92 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.75 Total: 10.07 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -5.12 Total: -28.36 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.18 Total: -41.60 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.98 -9.95 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.825 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds