Wall clock time and date at job start Mon Mar 30 2020 07:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86807 * 120.00166 * 2 1 4 4 H 1.48497 * 109.46892 * 270.00015 * 3 2 1 5 5 H 1.48499 * 109.46496 * 29.99494 * 3 2 1 6 6 H 1.48497 * 109.47240 * 149.99673 * 3 2 1 7 7 C 1.39935 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 197.88627 * 7 2 1 9 9 C 1.41406 * 119.99839 * 17.89434 * 7 2 1 10 10 C 1.40789 * 120.20533 * 24.42799 * 9 7 2 11 11 C 1.37653 * 119.89099 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32814 * 359.75048 * 11 10 9 13 13 C 1.39298 * 120.41953 * 0.51069 * 12 11 10 14 14 N 1.39682 * 119.95111 * 179.76494 * 13 12 11 15 15 C 1.46506 * 119.99998 * 359.72311 * 14 13 12 16 16 C 1.52997 * 109.46934 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47191 * 180.02562 * 16 15 14 18 18 C 1.38223 * 119.61981 * 124.97317 * 17 16 15 19 19 C 1.38632 * 119.15644 * 179.79130 * 18 17 16 20 20 C 1.38675 * 118.42165 * 0.47922 * 19 18 17 21 21 C 1.38172 * 119.16181 * 359.50124 * 20 19 18 22 22 N 1.31854 * 119.61470 * 305.00331 * 17 16 15 23 23 C 1.38316 * 120.09866 * 359.48640 * 13 12 11 24 24 H 0.96990 * 120.00388 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.05489 * 0.05273 * 10 9 7 26 26 H 1.07996 * 119.83379 * 180.02562 * 11 10 9 27 27 H 1.07997 * 119.79352 * 180.27820 * 12 11 10 28 28 H 0.97003 * 120.00596 * 179.72161 * 14 13 12 29 29 H 1.08999 * 109.46753 * 60.00027 * 15 14 13 30 30 H 1.08997 * 109.47021 * 299.99933 * 15 14 13 31 31 H 1.08999 * 109.47398 * 60.00398 * 16 15 14 32 32 H 1.09006 * 109.47317 * 299.99586 * 16 15 14 33 33 H 1.07995 * 120.42268 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.78486 * 180.23472 * 19 18 17 35 35 H 1.08002 * 120.41337 * 179.78408 * 20 19 18 36 36 H 1.08004 * 119.61539 * 180.25161 * 21 20 19 37 37 H 1.08002 * 120.16251 * 180.23052 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2878 9 6 1.3523 -2.4070 -0.3752 10 6 0.2216 -2.3614 -1.2127 11 6 -0.4120 -3.5288 -1.5741 12 6 0.0604 -4.7499 -1.1218 13 6 1.1748 -4.8101 -0.2883 14 7 1.6399 -6.0465 0.1660 15 6 0.9520 -7.2781 -0.2294 16 6 1.6578 -8.4809 0.3999 17 6 0.9507 -9.7479 -0.0073 18 6 1.6644 -10.7632 -0.6159 19 6 1.0052 -11.9264 -0.9825 20 6 -0.3553 -12.0211 -0.7313 21 6 -1.0021 -10.9649 -0.1188 22 7 -0.3418 -9.8748 0.2206 23 6 1.8250 -3.6480 0.0856 24 1 -0.4850 0.8399 -0.0004 25 1 -0.1478 -1.4121 -1.5715 26 1 -1.2791 -3.4928 -2.2169 27 1 -0.4407 -5.6608 -1.4143 28 1 2.4183 -6.0896 0.7432 29 1 0.9711 -7.3723 -1.3152 30 1 -0.0818 -7.2433 0.1142 31 1 1.6384 -8.3864 1.4856 32 1 2.6918 -8.5160 0.0566 33 1 2.7229 -10.6534 -0.8000 34 1 1.5378 -12.7377 -1.4562 35 1 -0.9015 -12.9112 -1.0069 36 1 -2.0607 -11.0325 0.0840 37 1 2.6913 -3.6938 0.7289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313434919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:53 Heat of formation + Delta-G solvation = 30.227471 kcal Electronic energy + Delta-G solvation = -18464.831225 eV Core-core repulsion = 15591.321315 eV Total energy + Delta-G solvation = -2873.509909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12438 -39.64323 -37.11799 -35.30208 -33.80328 -33.20458 -31.69154 -30.68332 -28.23410 -27.14770 -24.98685 -24.27672 -22.93187 -22.22635 -21.69447 -19.20999 -17.75842 -17.35668 -17.20876 -16.82945 -16.45425 -16.29948 -15.89570 -15.68039 -14.85971 -14.74881 -14.42931 -14.13452 -13.95449 -13.69868 -13.54400 -13.20175 -12.82776 -12.72698 -12.61304 -12.48859 -12.23938 -12.07227 -11.66372 -11.20391 -11.05376 -10.78786 -10.49121 -10.29928 -9.88566 -9.34738 -8.60295 -7.95878 -6.32203 0.18413 0.40265 1.04401 1.34103 1.40017 1.53600 1.60276 2.23607 2.68849 2.80727 2.91293 3.42413 3.82940 3.86331 4.02723 4.13535 4.19945 4.27511 4.36162 4.46706 4.53933 4.70958 4.76099 4.87108 5.00274 5.01748 5.13221 5.16714 5.23233 5.29197 5.30082 5.41858 5.59520 5.82910 5.93989 6.01668 6.19741 6.30021 6.61677 6.87848 7.02183 7.05187 7.10123 7.26002 8.38351 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.052443 B = 0.002996 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.781351 B = 9344.913782 C = 9658.733018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.501 4.501 8 H 0.074 0.926 9 C 0.112 3.888 10 C -0.231 4.231 11 C -0.076 4.076 12 C -0.307 4.307 13 C 0.232 3.768 14 N -0.753 5.753 15 C 0.152 3.848 16 C -0.070 4.070 17 C 0.112 3.888 18 C -0.172 4.172 19 C -0.076 4.076 20 C -0.175 4.175 21 C 0.082 3.918 22 N -0.517 5.517 23 C -0.310 4.310 24 H 0.287 0.713 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.399 0.601 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 -20.637 -1.349 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.531 4.531 8 H 0.092 0.908 9 C 0.110 3.890 10 C -0.252 4.252 11 C -0.095 4.095 12 C -0.330 4.330 13 C 0.131 3.869 14 N -0.386 5.386 15 C 0.027 3.973 16 C -0.108 4.108 17 C -0.026 4.026 18 C -0.191 4.191 19 C -0.102 4.102 20 C -0.194 4.194 21 C -0.075 4.075 22 N -0.227 5.227 23 C -0.334 4.334 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.234 0.766 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.182 0.818 36 H 0.187 0.813 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.596 -19.957 -1.005 20.046 hybrid contribution 0.624 0.242 -0.095 0.676 sum 2.219 -19.715 -1.100 19.870 Atomic orbital electron populations 1.69922 1.09116 1.30418 1.35557 1.26808 0.95483 1.04603 0.91149 0.85181 0.79043 0.75777 0.79505 1.18669 1.19209 1.18140 1.19813 0.98314 0.92516 1.42419 0.90751 1.17720 0.90986 0.92525 0.87818 1.21116 1.01839 0.96771 1.05449 1.20709 0.97932 0.92660 0.98186 1.20126 1.03514 0.96791 1.12589 1.17537 0.92270 0.85220 0.91882 1.44450 1.34670 1.02271 1.57180 1.20917 0.95743 0.82865 0.97800 1.20630 0.99331 0.89021 1.01823 1.21187 0.90079 0.95859 0.95472 1.22274 1.02600 0.94348 0.99926 1.22029 0.94732 0.97664 0.95766 1.22501 0.95923 1.00990 1.00022 1.23187 1.01173 0.88655 0.94475 1.67442 1.09783 1.26344 1.19161 1.20522 1.07443 0.91819 1.13613 0.90245 0.88435 0.87575 0.87898 0.76642 0.94124 0.93971 0.89508 0.87672 0.82666 0.81681 0.81849 0.81312 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.28 10.95 21.82 0.24 -45.05 16 2 C 0.03 1.82 5.14 85.25 0.44 2.25 16 3 Si 0.98 39.66 29.60 68.60 2.03 41.69 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.50 -28.43 9.05 23.46 0.21 -28.22 16 8 H 0.07 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.11 6.49 5.57 -21.31 -0.12 6.37 16 10 C -0.23 -13.12 8.69 22.76 0.20 -12.92 16 11 C -0.08 -3.87 10.02 22.20 0.22 -3.64 16 12 C -0.31 -14.75 9.32 22.59 0.21 -14.54 16 13 C 0.23 10.93 6.64 38.16 0.25 11.18 16 14 N -0.75 -27.48 5.73 -339.58 -1.95 -29.43 16 15 C 0.15 4.75 4.76 86.38 0.41 5.16 16 16 C -0.07 -1.61 5.73 29.85 0.17 -1.43 16 17 C 0.11 2.56 6.18 42.55 0.26 2.82 16 18 C -0.17 -2.89 9.71 22.36 0.22 -2.67 16 19 C -0.08 -1.01 10.18 22.47 0.23 -0.78 16 20 C -0.17 -2.41 10.11 22.36 0.23 -2.18 16 21 C 0.08 1.58 11.18 84.67 0.95 2.53 16 22 N -0.52 -13.33 9.88 -183.89 -1.82 -15.14 16 23 C -0.31 -16.21 9.63 22.86 0.22 -15.99 16 24 H 0.29 14.19 8.30 -92.72 -0.77 13.42 16 25 H 0.10 5.74 6.15 -2.91 -0.02 5.73 16 26 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 27 H 0.10 4.51 6.70 -2.91 -0.02 4.49 16 28 H 0.40 12.70 8.48 -92.71 -0.79 11.92 16 29 H 0.04 1.33 7.93 -2.39 -0.02 1.31 16 30 H 0.04 1.51 7.76 -2.39 -0.02 1.49 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.10 1.89 7.87 -2.38 -0.02 1.88 16 33 H 0.16 1.83 7.95 -2.91 -0.02 1.81 16 34 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.09 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -69.14 316.87 2.90 -66.25 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.29 Total: 33.74 kcal Atomic # 6 Polarization: -56.17 SS G_CDS: 4.10 Total: -52.07 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -3.52 Total: -89.62 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -69.14 2.90 -66.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.477 kcal (2) G-P(sol) polarization free energy of solvation -69.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds