Wall clock time and date at job start Mon Mar 30 2020 07:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86804 * 119.99822 * 2 1 4 4 H 1.48507 * 109.46656 * 239.99902 * 3 2 1 5 5 H 1.48497 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47492 * 119.99518 * 3 2 1 7 7 C 1.39932 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 197.88003 * 7 2 1 9 9 C 1.41404 * 119.99616 * 17.88004 * 7 2 1 10 10 C 1.40787 * 120.20324 * 204.41589 * 9 7 2 11 11 C 1.37654 * 119.89284 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32119 * 359.74777 * 11 10 9 13 13 C 1.39293 * 120.42696 * 0.51313 * 12 11 10 14 14 N 1.39692 * 119.95419 * 179.76805 * 13 12 11 15 15 C 1.46504 * 119.99806 * 359.71634 * 14 13 12 16 16 C 1.52992 * 109.47062 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47444 * 180.02562 * 16 15 14 18 18 C 1.38648 * 120.78866 * 89.99772 * 17 16 15 19 19 C 1.38212 * 119.15923 * 179.97438 * 18 17 16 20 20 N 1.31867 * 120.76624 * 0.02562 * 19 18 17 21 21 C 1.31868 * 121.72465 * 359.95862 * 20 19 18 22 22 C 1.38200 * 120.76803 * 0.03968 * 21 20 19 23 23 C 1.38312 * 120.09507 * 359.48492 * 13 12 11 24 24 H 0.97000 * 120.00263 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.05586 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.83762 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.78983 * 180.28207 * 12 11 10 28 28 H 0.96997 * 120.00399 * 179.72382 * 14 13 12 29 29 H 1.09004 * 109.46780 * 60.00301 * 15 14 13 30 30 H 1.09001 * 109.47318 * 300.00848 * 15 14 13 31 31 H 1.09004 * 109.47240 * 60.00384 * 16 15 14 32 32 H 1.09001 * 109.47584 * 300.00486 * 16 15 14 33 33 H 1.07995 * 120.42303 * 359.70788 * 18 17 16 34 34 H 1.08003 * 119.61054 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.61523 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.42334 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.16201 * 180.23003 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0489 -1.2342 0.2877 9 6 1.3522 -2.4070 -0.3749 10 6 1.8263 -3.6499 0.0860 11 6 1.1832 -4.8095 -0.2839 12 6 0.0679 -4.7596 -1.1038 13 6 -0.4094 -3.5375 -1.5720 14 7 -1.5321 -3.4991 -2.4023 15 6 -2.2029 -4.7439 -2.7852 16 6 -3.3933 -4.4239 -3.6913 17 6 -4.0838 -5.7043 -4.0847 18 6 -5.1138 -6.2211 -3.3136 19 6 -5.7239 -7.3975 -3.7061 20 7 -5.3366 -8.0264 -4.7985 21 6 -4.3611 -7.5641 -5.5559 22 6 -3.7045 -6.3934 -5.2266 23 6 0.2232 -2.3617 -1.2111 24 1 -0.4850 0.8400 -0.0004 25 1 2.6930 -3.6936 0.7288 26 1 1.5474 -5.7624 0.0706 27 1 -0.4327 -5.6743 -1.3850 28 1 -1.8674 -2.6482 -2.7255 29 1 -2.5547 -5.2572 -1.8902 30 1 -1.5018 -5.3850 -3.3196 31 1 -3.0411 -3.9109 -4.5863 32 1 -4.0945 -3.7826 -3.1573 33 1 -5.4323 -5.7131 -2.4154 34 1 -6.5272 -7.8063 -3.1111 35 1 -4.0717 -8.1067 -6.4437 36 1 -2.9061 -6.0201 -5.8506 37 1 -0.1481 -1.4133 -1.5705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313451030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:36 Heat of formation + Delta-G solvation = 45.183240 kcal Electronic energy + Delta-G solvation = -18604.979876 eV Core-core repulsion = 15732.118497 eV Total energy + Delta-G solvation = -2872.861379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31217 -37.89028 -35.81591 -33.89092 -32.98620 -31.35398 -29.79680 -29.43134 -26.92357 -25.22806 -23.63019 -23.61274 -21.74658 -20.68543 -19.87809 -17.31056 -16.69716 -16.57041 -15.80022 -15.69163 -14.96407 -14.71911 -14.49992 -14.33184 -13.89574 -13.74501 -13.01838 -12.82778 -12.28526 -12.24632 -12.19335 -11.86017 -11.65005 -11.39175 -11.05395 -10.93276 -10.57184 -10.42080 -9.72946 -9.66759 -9.55610 -9.45589 -9.32281 -9.23493 -8.77355 -7.31347 -6.73229 -6.18985 -4.31285 0.97578 1.08039 2.88387 3.08581 3.12123 3.22599 3.34193 3.64000 3.97427 4.12084 4.30364 4.57640 4.71590 4.77263 4.93874 4.98597 5.15487 5.16621 5.41339 5.61047 5.61556 5.80156 5.86449 5.96449 6.08961 6.27281 6.28679 6.54413 6.58296 6.87555 7.10037 7.13756 7.36840 7.43124 7.79673 7.80510 7.95617 8.09931 8.16829 8.48277 8.68206 8.82844 9.01024 9.11399 10.25542 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032734 B = 0.003381 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.169022 B = 8280.808519 C = 8772.828314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.256 4.256 11 C -0.066 4.066 12 C -0.300 4.300 13 C 0.214 3.786 14 N -0.762 5.762 15 C 0.146 3.854 16 C -0.096 4.096 17 C -0.029 4.029 18 C -0.168 4.168 19 C 0.098 3.902 20 N -0.493 5.493 21 C 0.097 3.903 22 C -0.169 4.169 23 C -0.231 4.231 24 H 0.278 0.722 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.390 0.610 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 -7.001 -8.269 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.277 4.277 11 C -0.085 4.085 12 C -0.322 4.322 13 C 0.116 3.884 14 N -0.396 5.396 15 C 0.020 3.980 16 C -0.134 4.134 17 C -0.038 4.038 18 C -0.188 4.188 19 C -0.059 4.059 20 N -0.202 5.202 21 C -0.059 4.059 22 C -0.189 4.189 23 C -0.255 4.255 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.223 0.777 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.803 -7.818 -8.493 15.144 hybrid contribution 0.612 1.848 0.228 1.960 sum -9.191 -5.969 -8.265 13.726 Atomic orbital electron populations 1.69857 1.07502 1.28870 1.35616 1.25874 0.94677 1.01079 0.92297 0.86436 0.80198 0.80511 0.79919 1.18924 1.20479 1.19083 1.19525 0.98085 0.91313 1.40585 0.90604 1.17316 0.90092 0.91831 0.87207 1.20874 1.04860 0.92916 1.09050 1.20287 0.95095 0.96282 0.96836 1.19880 1.04504 0.94376 1.13475 1.17630 0.86288 0.94365 0.90118 1.44375 1.32145 1.06206 1.56907 1.20920 0.91947 0.88498 0.96604 1.20856 0.97638 0.93899 1.00969 1.20227 0.94096 0.95821 0.93609 1.22125 0.97541 0.98038 1.01125 1.22753 0.98177 0.91892 0.93086 1.67663 1.13813 1.33148 1.05559 1.22746 0.91573 0.93407 0.98214 1.22113 1.01635 0.97017 0.98100 1.20718 1.02652 0.94986 1.07101 0.91151 0.89360 0.89629 0.89759 0.77693 0.93171 0.93198 0.90003 0.89942 0.84647 0.82809 0.82827 0.84686 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.54 10.96 55.55 0.61 -19.93 16 2 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 3 Si 0.90 18.79 29.60 -169.99 -5.03 13.76 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.47 -12.54 9.05 -37.74 -0.34 -12.89 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.14 3.77 5.57 -106.85 -0.60 3.18 16 10 C -0.26 -6.51 9.79 -38.83 -0.38 -6.89 16 11 C -0.07 -1.54 10.02 -39.69 -0.40 -1.94 16 12 C -0.30 -6.86 9.32 -39.09 -0.36 -7.23 16 13 C 0.21 4.97 6.64 -83.86 -0.56 4.42 16 14 N -0.76 -14.07 5.73 -58.68 -0.34 -14.41 16 15 C 0.15 2.17 4.89 -4.04 -0.02 2.15 16 16 C -0.10 -1.08 5.51 -27.89 -0.15 -1.23 16 17 C -0.03 -0.31 5.17 -104.32 -0.54 -0.85 16 18 C -0.17 -1.74 9.82 -39.44 -0.39 -2.13 16 19 C 0.10 1.01 11.18 -17.55 -0.20 0.82 16 20 N -0.49 -5.79 10.36 -13.25 -0.14 -5.93 16 21 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 22 C -0.17 -1.72 9.82 -39.44 -0.39 -2.11 16 23 C -0.23 -6.00 8.53 -38.68 -0.33 -6.33 16 24 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 25 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 26 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.08 1.75 6.70 -52.49 -0.35 1.40 16 28 H 0.39 6.71 8.48 -40.82 -0.35 6.36 16 29 H 0.05 0.79 7.93 -51.93 -0.41 0.38 16 30 H 0.05 0.77 7.95 -51.93 -0.41 0.35 16 31 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -29.63 317.57 -9.82 -39.45 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -4.77 Total: 10.61 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -4.94 Total: -28.34 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.13 Total: -40.27 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.63 -9.82 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.632 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds