Wall clock time and date at job start Mon Mar 30 2020 07:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86804 * 119.99822 * 2 1 4 4 H 1.48507 * 109.46656 * 239.99902 * 3 2 1 5 5 H 1.48497 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47492 * 119.99518 * 3 2 1 7 7 C 1.39932 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 197.88003 * 7 2 1 9 9 C 1.41404 * 119.99616 * 17.88004 * 7 2 1 10 10 C 1.40787 * 120.20324 * 204.41589 * 9 7 2 11 11 C 1.37654 * 119.89284 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32119 * 359.74777 * 11 10 9 13 13 C 1.39293 * 120.42696 * 0.51313 * 12 11 10 14 14 N 1.39692 * 119.95419 * 179.76805 * 13 12 11 15 15 C 1.46504 * 119.99806 * 359.71634 * 14 13 12 16 16 C 1.52992 * 109.47062 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47444 * 180.02562 * 16 15 14 18 18 C 1.38648 * 120.78866 * 89.99772 * 17 16 15 19 19 C 1.38212 * 119.15923 * 179.97438 * 18 17 16 20 20 N 1.31867 * 120.76624 * 0.02562 * 19 18 17 21 21 C 1.31868 * 121.72465 * 359.95862 * 20 19 18 22 22 C 1.38200 * 120.76803 * 0.03968 * 21 20 19 23 23 C 1.38312 * 120.09507 * 359.48492 * 13 12 11 24 24 H 0.97000 * 120.00263 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.05586 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.83762 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.78983 * 180.28207 * 12 11 10 28 28 H 0.96997 * 120.00399 * 179.72382 * 14 13 12 29 29 H 1.09004 * 109.46780 * 60.00301 * 15 14 13 30 30 H 1.09001 * 109.47318 * 300.00848 * 15 14 13 31 31 H 1.09004 * 109.47240 * 60.00384 * 16 15 14 32 32 H 1.09001 * 109.47584 * 300.00486 * 16 15 14 33 33 H 1.07995 * 120.42303 * 359.70788 * 18 17 16 34 34 H 1.08003 * 119.61054 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.61523 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.42334 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.16201 * 180.23003 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0489 -1.2342 0.2877 9 6 1.3522 -2.4070 -0.3749 10 6 1.8263 -3.6499 0.0860 11 6 1.1832 -4.8095 -0.2839 12 6 0.0679 -4.7596 -1.1038 13 6 -0.4094 -3.5375 -1.5720 14 7 -1.5321 -3.4991 -2.4023 15 6 -2.2029 -4.7439 -2.7852 16 6 -3.3933 -4.4239 -3.6913 17 6 -4.0838 -5.7043 -4.0847 18 6 -5.1138 -6.2211 -3.3136 19 6 -5.7239 -7.3975 -3.7061 20 7 -5.3366 -8.0264 -4.7985 21 6 -4.3611 -7.5641 -5.5559 22 6 -3.7045 -6.3934 -5.2266 23 6 0.2232 -2.3617 -1.2111 24 1 -0.4850 0.8400 -0.0004 25 1 2.6930 -3.6936 0.7288 26 1 1.5474 -5.7624 0.0706 27 1 -0.4327 -5.6743 -1.3850 28 1 -1.8674 -2.6482 -2.7255 29 1 -2.5547 -5.2572 -1.8902 30 1 -1.5018 -5.3850 -3.3196 31 1 -3.0411 -3.9109 -4.5863 32 1 -4.0945 -3.7826 -3.1573 33 1 -5.4323 -5.7131 -2.4154 34 1 -6.5272 -7.8063 -3.1111 35 1 -4.0717 -8.1067 -6.4437 36 1 -2.9061 -6.0201 -5.8506 37 1 -0.1481 -1.4133 -1.5705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313451030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:35 Heat of formation + Delta-G solvation = 29.197728 kcal Electronic energy + Delta-G solvation = -18605.673060 eV Core-core repulsion = 15732.118497 eV Total energy + Delta-G solvation = -2873.554562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.10248 -39.64299 -37.20120 -35.48155 -34.44755 -32.10482 -31.35366 -31.10307 -28.37686 -27.13948 -24.83132 -24.37527 -23.09062 -22.13480 -21.65826 -19.10812 -17.83351 -17.39699 -17.26114 -16.61742 -16.49178 -16.40405 -15.96431 -15.60932 -14.85889 -14.64519 -14.50181 -14.46896 -14.05009 -13.58212 -13.37111 -13.21500 -12.98564 -12.77600 -12.69668 -12.48167 -12.14615 -12.03470 -11.54305 -11.32108 -11.05819 -10.51977 -10.50386 -10.43438 -10.06818 -9.25765 -8.61713 -7.93007 -6.31757 0.22090 0.26612 1.09277 1.32647 1.39561 1.50425 1.60078 2.23745 2.70965 2.81947 2.92061 3.61042 3.79473 3.79829 3.86679 4.07012 4.21093 4.22933 4.28921 4.48085 4.54996 4.73535 4.78491 4.84679 4.95625 4.96626 5.01611 5.07630 5.20550 5.29930 5.44294 5.44401 5.59988 5.79802 5.95451 6.09941 6.21262 6.24605 6.57554 6.93406 7.03774 7.04205 7.06495 7.24754 8.38556 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032734 B = 0.003381 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.169022 B = 8280.808519 C = 8772.828314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.108 3.892 10 C -0.285 4.285 11 C -0.063 4.063 12 C -0.304 4.304 13 C 0.219 3.781 14 N -0.755 5.755 15 C 0.147 3.853 16 C -0.082 4.082 17 C -0.041 4.041 18 C -0.173 4.173 19 C 0.089 3.911 20 N -0.516 5.516 21 C 0.089 3.911 22 C -0.172 4.172 23 C -0.258 4.258 24 H 0.286 0.714 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.395 0.605 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.176 0.824 35 H 0.177 0.823 36 H 0.151 0.849 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 -7.254 -9.061 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.105 3.895 10 C -0.306 4.306 11 C -0.082 4.082 12 C -0.327 4.327 13 C 0.118 3.882 14 N -0.387 5.387 15 C 0.022 3.978 16 C -0.120 4.120 17 C -0.050 4.050 18 C -0.193 4.193 19 C -0.067 4.067 20 N -0.226 5.226 21 C -0.067 4.067 22 C -0.191 4.191 23 C -0.282 4.282 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.229 0.771 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.166 0.834 34 H 0.193 0.807 35 H 0.194 0.806 36 H 0.169 0.831 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.574 -8.093 -9.305 16.244 hybrid contribution 0.752 1.790 0.438 1.991 sum -9.822 -6.302 -8.866 14.656 Atomic orbital electron populations 1.69907 1.08847 1.30228 1.35648 1.26701 0.95501 1.04231 0.91257 0.85305 0.78848 0.75895 0.79921 1.18647 1.19090 1.18580 1.19784 0.98273 0.92716 1.42660 0.91040 1.17718 0.91031 0.92787 0.87942 1.21034 1.05828 0.93371 1.10328 1.20643 0.94669 0.96912 0.95980 1.20203 1.04402 0.95125 1.12980 1.17740 0.86978 0.93690 0.89811 1.44466 1.30766 1.08033 1.55473 1.21048 0.92949 0.86734 0.97075 1.20698 0.96214 0.94431 1.00608 1.20267 0.94646 0.95798 0.94291 1.22325 0.97375 0.98094 1.01493 1.23143 0.98656 0.91932 0.93014 1.67699 1.14612 1.33965 1.06322 1.23160 0.91168 0.93648 0.98768 1.22329 1.01875 0.96869 0.98055 1.20659 1.03574 0.95457 1.08523 0.90377 0.89197 0.86519 0.87319 0.77054 0.93680 0.93269 0.88958 0.89271 0.83381 0.80743 0.80645 0.83140 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.23 10.96 21.82 0.24 -42.99 16 2 C 0.04 1.96 5.14 85.25 0.44 2.39 16 3 Si 0.98 38.75 29.60 68.60 2.03 40.78 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.50 -28.13 9.05 23.46 0.21 -27.91 16 8 H 0.07 3.87 7.91 -2.91 -0.02 3.84 16 9 C 0.11 6.07 5.57 -21.31 -0.12 5.95 16 10 C -0.28 -14.74 9.79 22.76 0.22 -14.51 16 11 C -0.06 -2.90 10.02 22.20 0.22 -2.68 16 12 C -0.30 -13.54 9.32 22.59 0.21 -13.33 16 13 C 0.22 10.09 6.64 38.16 0.25 10.34 16 14 N -0.75 -27.02 5.73 -339.58 -1.95 -28.96 16 15 C 0.15 4.06 4.89 86.38 0.42 4.49 16 16 C -0.08 -1.66 5.51 29.84 0.16 -1.49 16 17 C -0.04 -0.81 5.17 -19.67 -0.10 -0.91 16 18 C -0.17 -3.23 9.82 22.36 0.22 -3.01 16 19 C 0.09 1.68 11.18 84.68 0.95 2.63 16 20 N -0.52 -11.30 10.36 -195.84 -2.03 -13.33 16 21 C 0.09 1.65 11.18 84.68 0.95 2.60 16 22 C -0.17 -3.12 9.82 22.36 0.22 -2.90 16 23 C -0.26 -13.72 8.53 22.85 0.20 -13.53 16 24 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 25 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 27 H 0.11 4.25 6.70 -2.91 -0.02 4.23 16 28 H 0.40 13.26 8.48 -92.71 -0.79 12.47 16 29 H 0.04 1.32 7.93 -2.38 -0.02 1.30 16 30 H 0.05 1.40 7.95 -2.39 -0.02 1.38 16 31 H 0.09 1.69 8.10 -2.38 -0.02 1.67 16 32 H 0.09 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 Total: -1.00 -64.48 317.57 3.04 -61.45 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.29 Total: 34.94 kcal Atomic # 6 Polarization: -56.34 SS G_CDS: 4.45 Total: -51.89 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -3.74 Total: -85.28 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -64.48 3.04 -61.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.645 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds