Wall clock time and date at job start Mon Mar 30 2020 07:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38231 * 120.42204 * 2 1 4 4 N 1.31849 * 120.76451 * 180.02562 * 3 2 1 5 5 C 1.31883 * 121.72799 * 359.71164 * 4 3 2 6 6 C 1.38179 * 120.76318 * 0.57834 * 5 4 3 7 7 C 1.50701 * 120.41978 * 179.70729 * 6 5 4 8 8 N 1.46508 * 109.46696 * 269.72496 * 7 6 5 9 9 C 1.39687 * 119.99427 * 179.97438 * 8 7 6 10 10 C 1.39338 * 119.95737 * 359.73123 * 9 8 7 11 11 C 1.38467 * 120.42486 * 179.72203 * 10 9 8 12 12 C 1.37689 * 120.32888 * 0.54632 * 11 10 9 13 13 C 1.40753 * 119.89029 * 359.72712 * 12 11 10 14 14 C 1.41405 * 120.20969 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99710 * 24.41420 * 14 13 12 16 16 C 1.39923 * 120.00586 * 204.40793 * 14 13 12 17 17 N 1.30838 * 119.99517 * 17.89048 * 16 14 13 18 18 Si 1.86802 * 120.00596 * 197.88906 * 16 14 13 19 19 H 1.48503 * 109.46758 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47002 * 120.00066 * 18 16 14 21 21 H 1.48498 * 109.47274 * 240.00100 * 18 16 14 22 22 C 1.38286 * 119.94730 * 179.97438 * 9 8 7 23 23 C 1.38635 * 120.42049 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47095 * 269.97260 * 1 2 3 25 25 H 1.09008 * 109.47528 * 29.97407 * 1 2 3 26 26 H 1.09001 * 109.47663 * 149.97372 * 1 2 3 27 27 H 1.08006 * 119.61253 * 0.04869 * 3 2 1 28 28 H 1.07999 * 119.62288 * 180.30868 * 5 4 3 29 29 H 1.08994 * 109.47617 * 149.72957 * 7 6 5 30 30 H 1.08997 * 109.46905 * 29.72064 * 7 6 5 31 31 H 0.96996 * 120.00313 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.78163 * 359.97438 * 10 9 8 33 33 H 1.08006 * 119.83731 * 180.27474 * 11 10 9 34 34 H 1.08000 * 120.05983 * 179.74668 * 12 11 10 35 35 H 0.97003 * 119.99544 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.15930 * 359.97438 * 22 9 8 37 37 H 1.07999 * 120.78800 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.1999 -0.0005 5 6 4.2256 0.0823 0.0046 6 6 3.5947 -1.1471 -0.0012 7 6 4.4026 -2.4192 -0.0020 8 7 4.6638 -2.8310 -1.3835 9 6 5.4003 -3.9900 -1.6394 10 6 5.8909 -4.7507 -0.5801 11 6 6.6173 -5.9043 -0.8225 12 6 6.8724 -6.3066 -2.1144 13 6 6.3882 -5.5454 -3.1947 14 6 6.6458 -5.9526 -4.5241 15 1 6.8473 -6.9912 -4.7413 16 6 6.6396 -5.0101 -5.5583 17 7 6.7473 -3.7357 -5.2825 18 14 6.4778 -5.5713 -7.3327 19 1 6.3714 -7.0519 -7.3758 20 1 5.2597 -4.9702 -7.9328 21 1 7.6731 -5.1379 -8.0999 22 6 5.6458 -4.3780 -2.9438 23 6 2.2089 -1.1955 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6674 2.1277 0.0008 28 1 5.3046 0.1285 0.0091 29 1 3.8463 -3.2032 0.5117 30 1 5.3488 -2.2490 0.5115 31 1 4.3253 -2.2988 -2.1204 32 1 5.6999 -4.4406 0.4367 33 1 6.9893 -6.4892 0.0058 34 1 7.4429 -7.2050 -2.2985 35 1 6.7434 -3.0823 -5.9995 36 1 5.2690 -3.7873 -3.7656 37 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313451157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:57 Heat of formation + Delta-G solvation = 29.382968 kcal Electronic energy + Delta-G solvation = -18835.058437 eV Core-core repulsion = 15961.511907 eV Total energy + Delta-G solvation = -2873.546530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33150 -39.58013 -36.86831 -35.26392 -34.54511 -33.31538 -31.34099 -29.74142 -28.20210 -27.14997 -26.52194 -24.11815 -23.04517 -22.11442 -21.54275 -19.09067 -18.02085 -17.69273 -17.62137 -16.65505 -16.50602 -16.07269 -15.25394 -15.03088 -14.72142 -14.55829 -14.43332 -14.13825 -14.03474 -13.87447 -13.56222 -13.39565 -13.22207 -12.87325 -12.73391 -12.55865 -12.27833 -12.10185 -11.57251 -11.32924 -11.09509 -10.68699 -10.57837 -10.40722 -9.84524 -9.24910 -8.62596 -7.93273 -6.32172 0.02484 0.25010 1.07824 1.33279 1.38221 1.52898 1.57247 2.22786 2.59983 2.81218 3.07357 3.43122 3.70954 3.79289 3.87865 3.99965 4.01239 4.25318 4.47121 4.52265 4.63110 4.75912 4.80742 4.82852 4.88033 4.99846 5.17648 5.19975 5.25813 5.28976 5.30782 5.43996 5.58533 5.72878 5.94712 6.10937 6.21585 6.25373 6.57668 6.92159 6.95386 7.00512 7.06094 7.22442 8.37909 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.004209 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.654155 B = 6651.178881 C = 7423.630101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C 0.089 3.911 4 N -0.507 5.507 5 C 0.094 3.906 6 C -0.147 4.147 7 C 0.183 3.817 8 N -0.750 5.750 9 C 0.220 3.780 10 C -0.300 4.300 11 C -0.062 4.062 12 C -0.285 4.285 13 C 0.109 3.891 14 C -0.504 4.504 15 H 0.072 0.928 16 C 0.037 3.963 17 N -0.823 5.823 18 Si 0.978 3.022 19 H -0.258 1.258 20 H -0.265 1.265 21 H -0.266 1.266 22 C -0.259 4.259 23 C -0.068 4.068 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.180 0.820 28 H 0.156 0.844 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.389 0.611 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.284 0.716 36 H 0.097 0.903 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.593 8.028 8.625 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C -0.068 4.068 4 N -0.215 5.215 5 C -0.063 4.063 6 C -0.149 4.149 7 C 0.059 3.941 8 N -0.382 5.382 9 C 0.119 3.881 10 C -0.323 4.323 11 C -0.080 4.080 12 C -0.305 4.305 13 C 0.106 3.894 14 C -0.534 4.534 15 H 0.090 0.910 16 C -0.177 4.177 17 N -0.450 5.450 18 Si 0.799 3.201 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.191 1.191 22 C -0.283 4.283 23 C -0.094 4.094 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.197 0.803 28 H 0.173 0.827 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.223 0.777 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.116 9.071 8.749 16.804 hybrid contribution -0.120 -0.834 -1.171 1.442 sum -11.236 8.236 7.578 15.859 Atomic orbital electron populations 1.20789 0.87674 1.04182 1.03747 1.21284 0.99353 0.93256 0.99966 1.23214 0.89515 0.98988 0.95069 1.67716 1.09612 1.31372 1.12786 1.22795 1.00742 0.87356 0.95385 1.20882 0.95160 0.95890 1.03018 1.19956 0.97930 0.92112 0.84098 1.44503 1.61206 1.26299 1.06241 1.17745 0.90594 0.86442 0.93306 1.20235 1.14412 1.01142 0.96481 1.20662 0.96247 0.95504 0.95632 1.21041 1.11602 1.04580 0.93308 1.17705 0.87501 0.90955 0.93258 1.19837 1.45197 0.95717 0.92641 0.91007 1.26708 0.91160 0.94238 1.05606 1.69938 1.35606 1.03039 1.36372 0.85225 0.78874 0.79775 0.76200 1.18202 1.18985 1.19090 1.20650 1.10603 1.03495 0.93597 1.21716 0.93003 0.99543 0.95150 0.89435 0.89654 0.90855 0.80291 0.82717 0.91300 0.91807 0.77748 0.86585 0.86215 0.89187 0.90540 0.88465 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.04 71.23 0.71 -0.52 16 2 C -0.14 -2.57 5.90 -19.77 -0.12 -2.68 16 3 C 0.09 1.85 10.86 84.69 0.92 2.77 16 4 N -0.51 -13.42 10.36 -195.84 -2.03 -15.45 16 5 C 0.09 2.51 10.86 84.67 0.92 3.43 16 6 C -0.15 -3.76 5.27 -19.77 -0.10 -3.86 16 7 C 0.18 5.29 5.06 85.63 0.43 5.72 16 8 N -0.75 -27.95 5.72 -343.28 -1.96 -29.92 16 9 C 0.22 10.16 6.64 38.17 0.25 10.41 16 10 C -0.30 -13.03 9.32 22.59 0.21 -12.82 16 11 C -0.06 -2.78 10.01 22.19 0.22 -2.55 16 12 C -0.28 -14.64 9.79 22.76 0.22 -14.41 16 13 C 0.11 6.13 5.57 -21.31 -0.12 6.01 16 14 C -0.50 -28.39 9.05 23.46 0.21 -28.18 16 15 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 16 C 0.04 1.96 5.14 85.25 0.44 2.39 16 17 N -0.82 -44.53 10.96 21.82 0.24 -44.30 16 18 Si 0.98 39.51 29.60 68.60 2.03 41.54 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 22 C -0.26 -13.98 8.53 22.86 0.20 -13.79 16 23 C -0.07 -1.49 9.55 22.47 0.21 -1.27 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 26 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 27 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 29 H 0.07 1.88 7.91 -2.39 -0.02 1.86 16 30 H 0.06 1.83 7.88 -2.39 -0.02 1.81 16 31 H 0.39 14.60 8.47 -92.71 -0.79 13.81 16 32 H 0.12 4.29 6.70 -2.91 -0.02 4.27 16 33 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.09 4.43 8.06 -2.91 -0.02 4.40 16 35 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 36 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 37 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -64.56 317.49 3.19 -61.38 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.29 Total: 36.09 kcal Atomic # 6 Polarization: -53.97 SS G_CDS: 4.62 Total: -49.35 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -3.75 Total: -89.66 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -64.56 3.19 -61.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.759 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds